genome.fa.s22.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  103  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32540862--32541232	202	1.8	202	90	0	598	29	18	17	34	1.94
32540975--32541130	83	1.9	83	83	0	204	30	19	16	33	1.94
32540672--32541290	321	1.9	321	94	0	1087	29	19	16	34	1.94
32541058--32541289	119	1.9	119	92	1	394	30	18	16	34	1.93
32542133--32542176	21	2.1	22	87	8	65	4	20	0	75	0.98
32542140--32542185	21	2.2	21	88	7	67	2	15	0	82	0.76
32542142--32542185	14	3.3	13	84	12	54	2	15	0	81	0.78
32557131--32557319	40	4.7	40	96	0	333	30	20	28	20	1.98
32565688--32565796	40	2.7	40	95	0	191	30	21	28	20	1.98
32569924--32569967	16	2.6	17	85	3	54	2	20	4	72	1.13
32583256--32583560	46	6.7	45	77	5	177	21	17	17	44	1.87
32583360--32583519	45	3.5	46	80	1	171	23	18	16	41	1.90
32583487--32583614	45	2.8	45	82	2	132	18	18	17	44	1.87
32586334--32586390	28	2.0	28	86	0	78	31	21	21	26	1.98
32586509--32586583	26	2.9	26	83	0	96	42	21	18	17	1.89
32586793--32587254	27	17.1	27	76	8	379	24	15	18	41	1.89
32586765--32587254	81	6.0	81	81	6	490	23	15	18	41	1.89
32594931--32595008	41	1.9	41	83	0	102	23	19	25	32	1.98
32596982--32597058	26	3.0	26	90	0	109	42	24	18	14	1.87
32597238--32597537	27	11.1	27	81	8	299	19	15	20	45	1.86
32600947--32601124	27	6.6	27	81	3	169	28	29	15	26	1.96
32600972--32601123	54	2.8	54	83	3	189	27	29	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32609188--32609355	46	3.7	46	81	4	178	18	22	14	45	1.85
32609325--32609537	45	4.7	45	81	0	237	22	21	19	36	1.95
32609383--32609578	90	2.2	90	79	0	221	23	20	18	36	1.95
32618727--32618755	14	2.1	14	100	0	58	55	13	0	31	1.39
32618804--32618874	27	2.7	28	86	6	87	35	18	8	38	1.81
32618818--32618874	27	2.1	27	93	0	96	38	15	8	36	1.79
32619073--32619099	6	4.5	6	100	0	54	18	37	0	44	1.50
32618988--32619083	48	2.0	47	84	8	122	32	16	10	40	1.83
32621118--32621160	17	2.5	17	78	14	52	37	18	0	44	1.50
32623830--32624090	103	2.5	103	100	0	522	42	16	4	36	1.69
32626102--32626325	104	2.2	104	93	1	378	17	19	31	31	1.95
32626244--32626395	71	2.1	72	92	1	252	23	17	29	30	1.97
32633660--32633883	104	2.2	104	95	0	394	18	19	31	31	1.95
32633802--32633953	71	2.1	72	92	1	252	23	17	29	30	1.97
32640527--32640585	20	2.8	22	80	10	52	47	6	0	45	1.29
32640549--32640591	20	2.2	20	86	0	59	46	4	0	48	1.22
32642794--32642845	22	2.3	23	87	9	81	25	32	0	42	1.55
32642900--32642940	10	4.0	10	81	6	55	34	0	0	65	0.93
32642900--32642940	21	2.0	21	90	0	64	34	0	0	65	0.93
32642900--32642937	11	3.5	11	82	3	51	28	0	0	71	0.87
32643054--32643084	15	2.1	15	93	0	53	29	3	6	61	1.37
32645298--32647962	21	126.2	21	84	3	3114	46	27	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32645298--32647962	127	21.0	127	84	3	3144	46	27	0	25	1.56
32651129--32651660	125	4.3	125	90	0	825	31	22	17	28	1.97
32651129--32651641	249	2.1	249	93	0	866	31	22	17	29	1.96
32668866--32668939	36	2.0	37	97	2	141	43	13	10	32	1.79
32674012--32674037	3	8.7	3	100	0	52	69	0	0	30	0.89
32676543--32676642	49	2.0	49	100	0	200	37	8	15	40	1.76
32679820--32679959	40	3.5	40	76	6	151	30	25	17	27	1.97
32680120--32680166	24	2.0	24	84	16	62	51	17	0	31	1.46
32687751--32687836	11	7.7	11	75	10	77	3	18	3	74	1.11
32697544--32697571	2	14.0	2	100	0	56	0	0	50	50	1.00
32716581--32716629	16	3.1	15	78	18	55	69	2	0	28	1.00
32716595--32716651	25	2.4	25	85	8	75	63	1	0	35	1.05
32721062--32721086	13	1.9	13	100	0	50	8	32	8	52	1.60
32721923--32721949	13	2.1	13	100	0	54	29	14	18	37	1.91
32723993--32724038	20	2.2	22	88	7	69	52	0	0	47	1.00
32724017--32724110	48	1.9	49	95	2	172	45	6	4	43	1.49
32724345--32724386	15	2.9	15	82	10	52	47	0	0	52	1.00
32735299--32735591	47	6.4	47	87	6	413	32	9	30	27	1.88
32735403--32735530	39	3.1	39	82	16	175	31	9	31	28	1.88
32735355--32735530	86	2.0	86	97	0	334	31	9	30	28	1.88
32735309--32735576	133	2.0	133	91	0	437	31	9	31	27	1.89
32735710--32735788	37	2.1	37	88	4	115	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32747807--32747898	17	5.4	17	70	21	68	51	4	2	42	1.34
32759690--32759727	14	2.6	14	95	4	67	34	7	36	21	1.82
32760133--32760181	20	2.7	18	77	22	57	51	4	0	44	1.20
32760145--32760193	25	1.9	26	84	12	66	51	6	0	42	1.27
32760124--32760240	37	3.3	36	70	23	97	51	5	2	40	1.40
32761729--32761809	39	2.1	39	100	0	162	32	16	14	37	1.89
32766679--32766718	20	1.9	22	90	10	66	17	2	7	72	1.19
32769051--32769251	24	8.5	24	72	14	141	31	7	4	55	1.49
32769051--32769253	23	8.6	23	73	13	137	31	7	4	56	1.48
32769395--32769442	17	2.8	17	87	9	62	25	8	4	62	1.41
32786849--32786874	5	5.2	5	100	0	52	42	57	0	0	0.98
32788192--32788304	46	2.5	44	82	5	145	45	23	13	17	1.84
32788192--32788308	45	2.6	46	84	4	157	44	23	13	18	1.85
32789556--32789751	89	2.2	89	83	4	252	37	18	8	35	1.82
32789814--32789860	24	2.0	24	95	4	87	42	8	0	48	1.33
32789997--32790559	70	8.0	70	99	0	1117	34	14	5	45	1.69
32796514--32796554	19	2.1	20	86	4	57	58	4	4	31	1.40
32796511--32796558	19	2.6	17	78	15	51	56	4	6	33	1.44
32797667--32797723	26	2.2	26	83	0	69	21	10	29	38	1.87
32802815--32802852	20	1.9	20	89	10	60	60	0	2	36	1.11
32802940--32803003	20	3.3	20	82	12	98	43	12	1	42	1.52
32810711--32810833	49	2.5	50	80	4	142	30	21	28	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32816557--32816802	50	4.8	50	81	7	232	27	21	28	22	1.99
32820134--32820163	6	4.8	6	95	4	51	83	3	0	13	0.77
32845093--32845143	23	2.2	23	89	0	75	45	17	7	29	1.77
32845292--32845359	30	2.2	31	84	2	84	48	4	19	27	1.68
32853294--32853332	20	2.0	20	89	0	60	41	43	5	10	1.61
32854471--32854498	13	2.2	13	100	0	56	50	14	7	28	1.69
32857387--32857424	16	2.3	17	86	4	51	31	2	5	60	1.33
32861913--32861997	29	2.8	29	72	11	82	37	7	22	32	1.81
32861913--32862007	29	3.2	28	68	11	73	41	6	20	32	1.77
32869225--32869354	67	1.9	67	98	0	251	52	3	30	13	1.56
32872747--32872782	18	2.0	18	94	0	63	11	0	13	75	1.06
32895820--32895847	9	3.1	9	100	0	56	32	0	10	57	1.33
32895736--32895878	68	2.1	66	93	2	250	41	4	9	44	1.57
32900027--32900259	117	2.0	116	86	2	324	41	12	9	36	1.75
32900148--32900529	124	3.0	128	79	7	425	41	10	10	38	1.73
32902075--32902181	25	4.3	25	81	2	117	57	19	19	3	1.56
32902108--32902172	5	13.0	5	75	12	53	58	20	18	3	1.52
32902062--32902172	50	2.2	50	88	3	161	56	20	19	2	1.54
32902112--32902168	20	2.8	20	86	0	78	57	21	17	3	1.54
32903371--32903839	131	3.6	129	76	9	398	41	9	11	37	1.74
32906624--32906840	25	8.7	25	72	5	145	19	25	19	35	1.96
32906620--32906785	75	2.2	75	86	4	219	19	24	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32906650--32906837	75	2.5	74	81	4	200	18	26	19	35	1.95
32906807--32906876	25	2.8	25	86	2	88	20	25	21	32	1.97
32906807--32906888	25	3.3	25	78	8	78	20	24	24	30	1.99
32906875--32906952	41	1.9	41	97	0	147	24	20	23	32	1.98
32909301--32909456	70	2.2	70	86	2	206	25	16	25	33	1.95
32912263--32912353	33	2.7	34	81	6	87	32	14	25	27	1.94
32912262--32912447	105	1.8	101	86	6	266	31	15	24	27	1.96
32912295--32912524	105	2.3	99	80	6	237	33	16	23	26	1.96
32914488--32914522	4	8.8	4	100	0	70	25	22	0	51	1.48
32915218--32915284	33	2.0	33	97	0	125	25	19	8	46	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161