genome.fa.s22.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  105  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33136053--33136194	34	4.2	33	67	17	76	40	18	1	39	1.59
33136196--33136251	25	2.2	25	83	0	67	44	14	5	35	1.68
33136232--33136265	16	2.1	16	94	0	59	52	14	0	32	1.42
33141678--33141848	66	2.6	65	82	4	191	41	18	26	12	1.87
33141819--33141952	21	6.4	21	84	0	79	35	17	42	5	1.71
33141819--33141952	42	3.2	42	80	0	151	35	17	42	5	1.71
33142324--33142511	43	4.4	43	75	4	155	23	18	29	27	1.98
33142323--33142511	86	2.2	86	79	1	200	24	18	29	27	1.98
33142475--33142683	43	4.9	43	78	2	170	26	27	21	23	1.99
33142493--33142650	86	1.8	86	87	0	235	30	27	20	21	1.98
33142885--33142940	29	1.9	29	100	0	112	37	21	16	25	1.93
33144956--33145094	43	3.1	46	62	26	116	37	10	9	42	1.72
33144946--33145154	88	2.4	88	100	0	418	39	9	8	43	1.67
33145122--33145242	49	2.5	49	95	0	215	43	8	3	44	1.50
33145652--33145694	18	2.4	18	88	0	59	44	9	27	18	1.80
33148596--33148633	19	2.1	19	85	5	51	39	0	5	55	1.23
33155888--33155963	37	2.1	36	83	11	93	39	5	2	52	1.38
33162186--33162375	76	2.6	74	88	5	287	46	5	10	38	1.60
33166908--33167000	28	3.3	28	89	0	141	27	32	16	23	1.96
33168971--33169026	25	2.2	27	81	12	73	41	0	5	53	1.24
33168942--33169073	68	1.9	69	90	1	212	40	3	5	50	1.40
33181244--33181272	3	9.7	3	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33181285--33181322	3	12.7	3	100	0	76	0	0	65	34	0.93
33192303--33192341	10	3.9	10	93	0	60	35	0	25	38	1.56
33205896--33206121	40	5.7	40	90	4	314	24	21	27	26	1.99
33213908--33214092	79	2.3	81	83	7	227	24	22	27	24	2.00
33213909--33214092	40	4.6	40	82	9	207	25	22	27	24	2.00
33213961--33214125	79	2.1	79	83	6	201	26	21	27	24	1.99
33217305--33217337	17	1.9	17	93	0	57	57	15	12	15	1.65
33217724--33217762	15	2.6	15	87	0	60	17	25	12	43	1.85
33226333--33226368	11	3.4	11	92	7	65	63	0	11	25	1.27
33226331--33226366	10	3.5	10	92	7	63	61	0	8	30	1.26
33227512--33227562	27	1.9	26	96	4	93	49	19	13	17	1.80
33229729--33229790	17	3.6	17	77	0	70	30	35	17	16	1.92
33232013--33232098	42	2.0	43	86	2	120	25	22	2	50	1.61
33235738--33235903	85	1.9	86	86	3	237	28	21	20	29	1.98
33235794--33235991	41	4.7	41	75	13	184	27	21	21	29	1.99
33235830--33236033	45	4.6	45	75	6	202	27	21	20	30	1.98
33235794--33236047	130	2.0	130	97	0	481	26	21	21	30	1.98
33236303--33236358	24	2.3	24	93	0	94	28	26	12	32	1.93
33236038--33236819	384	2.0	383	95	1	1408	28	19	15	35	1.93
33236687--33236742	24	2.3	24	96	0	103	28	23	12	35	1.91
33265043--33265072	13	2.3	13	94	0	51	30	6	6	56	1.51
33270412--33270447	18	2.0	18	88	0	54	36	8	5	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33272596--33272669	26	2.8	27	84	10	91	43	10	17	28	1.83
33275040--33275083	24	1.9	22	81	9	52	29	20	9	40	1.83
33279571--33279606	17	2.1	17	89	0	54	33	33	11	22	1.89
33281896--33282007	57	2.0	57	89	0	170	21	12	25	41	1.88
33282636--33282706	19	3.4	19	67	32	56	43	4	8	43	1.54
33282635--33282734	44	2.2	44	96	1	182	45	4	10	41	1.56
33285560--33285658	36	2.7	37	80	11	116	45	26	4	24	1.71
33285593--33285646	22	2.5	22	77	17	58	42	25	1	29	1.66
33285603--33285663	29	2.1	30	81	9	72	49	22	1	26	1.59
33286458--33286503	22	2.0	23	87	4	67	47	26	2	23	1.63
33288549--33288628	40	2.0	40	87	0	115	28	15	13	42	1.85
33299642--33299882	50	4.8	50	81	1	252	21	27	21	28	1.99
33301372--33301439	25	2.7	25	90	0	109	20	27	17	33	1.95
33308340--33308417	37	2.1	38	85	2	104	37	17	14	30	1.90
33308352--33308430	37	2.1	37	83	0	95	41	15	11	31	1.82
33308442--33308525	37	2.3	38	79	8	93	39	13	20	27	1.89
33310251--33310288	12	3.2	12	78	14	51	50	10	0	39	1.37
33314839--33314879	20	2.0	20	100	0	82	48	14	14	21	1.80
33318278--33318312	15	2.3	15	85	14	54	25	11	11	51	1.71
33319394--33319425	12	2.6	13	90	9	50	59	0	37	3	1.13
33331213--33331260	19	2.6	19	96	3	89	37	0	12	50	1.41
33331282--33331370	41	2.1	44	89	6	139	34	5	10	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33335910--33335957	19	2.6	19	83	3	62	37	2	12	47	1.53
33345703--33345733	15	2.1	15	93	0	53	22	29	6	41	1.78
33349982--33350012	15	2.1	15	100	0	62	22	32	6	38	1.80
33355578--33355707	39	3.3	38	87	4	181	48	19	2	30	1.61
33355643--33355707	17	3.1	23	69	28	72	49	18	3	29	1.63
33363092--33363140	22	2.2	22	82	7	55	34	8	16	40	1.78
33370478--33370510	7	4.7	7	100	0	66	57	15	0	27	1.38
33370467--33370523	21	2.8	20	77	17	71	50	12	3	33	1.57
33373737--33373934	68	2.9	67	81	3	200	25	21	17	35	1.95
33378937--33378983	24	1.9	24	86	4	67	36	0	38	25	1.56
33379561--33379879	27	12.0	27	77	4	279	43	20	16	19	1.88
33379562--33379788	105	2.1	105	81	6	262	43	20	17	19	1.89
33379555--33379878	80	4.0	81	79	9	292	43	19	16	19	1.88
33388035--33388287	40	6.3	40	80	3	260	30	21	16	32	1.95
33388280--33388398	37	3.2	37	82	9	125	38	14	17	29	1.89
33388290--33388398	38	2.9	39	86	6	118	38	14	17	29	1.89
33393697--33393790	46	2.0	46	95	0	170	30	21	26	21	1.98
33395138--33395257	26	4.6	26	85	5	152	34	15	21	29	1.94
33395138--33395257	52	2.3	52	91	1	186	34	15	21	29	1.94
33419848--33419990	50	2.9	50	82	0	169	27	22	28	20	1.99
33420243--33420291	20	2.5	20	75	15	57	59	6	22	12	1.55
33427489--33427722	50	4.6	52	78	7	196	27	20	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33427495--33427681	100	1.8	102	81	6	234	26	19	29	24	1.99
33429634--33429665	16	2.0	16	100	0	64	68	0	0	31	0.90
33429641--33429665	13	1.9	13	100	0	50	68	0	0	32	0.90
33430106--33430163	22	2.6	22	81	7	64	41	17	5	36	1.72
33430153--33430177	12	2.1	12	100	0	50	44	16	0	40	1.47
33430165--33430226	19	3.3	19	95	0	115	38	16	8	37	1.78
33433962--33434021	23	2.4	26	84	15	83	23	26	20	30	1.98
33433953--33434021	23	2.9	22	83	14	75	21	27	18	31	1.97
33438388--33438674	140	2.1	140	91	0	459	35	13	22	28	1.92
33453813--33453878	24	2.7	25	71	19	66	7	21	0	71	1.11
33459092--33459289	109	1.8	110	96	1	371	44	11	12	32	1.77
33462261--33462376	22	5.1	23	70	16	82	43	20	13	21	1.86
33462126--33462392	23	11.5	23	66	14	93	43	19	10	26	1.83
33462143--33462404	70	3.8	69	89	1	371	43	19	10	26	1.83
33462153--33462404	139	1.8	139	87	1	380	44	19	10	25	1.83
33463223--33463366	41	3.5	41	85	0	189	32	28	20	18	1.96
33463784--33463813	10	3.0	10	95	0	51	33	0	0	66	0.92
33463782--33463813	14	2.3	14	94	0	55	31	0	0	68	0.90
33474987--33475052	27	2.4	27	85	5	89	15	22	19	42	1.88
33484485--33484545	25	2.4	25	78	10	63	37	3	1	57	1.25
33492036--33492080	21	2.1	22	84	12	58	48	11	11	28	1.73
33492494--33492518	10	2.5	10	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33509028--33509211	79	2.3	81	82	11	222	25	27	22	25	2.00
33509028--33509211	40	4.6	41	83	12	199	25	27	22	25	2.00
33516966--33517227	39	6.7	40	88	7	337	24	27	22	25	2.00
33529547--33529584	19	2.0	19	85	10	51	47	0	7	44	1.32
33530375--33530448	19	3.8	19	91	7	112	37	17	10	33	1.85
33530355--33530447	40	2.3	42	88	7	138	40	17	9	32	1.82
33530811--33531852	88	11.9	88	87	1	1282	22	23	25	28	1.99
33532755--33534070	88	15.0	88	86	3	1398	22	24	25	28	1.99
33533036--33533267	44	5.3	44	62	12	125	18	20	31	28	1.96
33532755--33534070	264	5.0	263	83	2	1602	22	24	25	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161