genome.fa.s22.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  36  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10905201--10905326	62	2.0	62	93	0	216	50	10	20	19	1.76
10907710--10907765	13	4.2	13	73	13	51	46	1	1	50	1.22
10914321--10914345	13	1.9	13	100	0	50	48	0	0	52	1.00
10914286--10914327	21	2.0	21	85	4	57	35	2	0	61	1.09
10915252--10915280	6	4.8	6	100	0	58	17	34	0	48	1.47
10916767--10916795	10	2.7	11	89	10	51	58	6	17	17	1.59
10918754--10918844	25	3.6	25	69	7	69	20	26	21	30	1.98
10919899--10919946	18	2.7	18	81	9	62	37	16	4	41	1.68
10920600--10920644	18	2.5	18	82	7	56	40	17	4	37	1.70
10919902--10921297	698	2.0	698	100	0	2792	35	21	15	27	1.94
10921986--10923681	848	2.0	848	100	0	3392	31	23	15	30	1.95
10928395--10928442	25	1.9	25	86	0	69	33	14	16	35	1.89
10930608--10930701	47	2.0	47	97	0	179	32	23	18	25	1.97
10932221--10932263	15	2.9	15	96	0	77	6	20	23	48	1.73
10933285--10933329	22	2.0	22	100	0	90	37	17	8	35	1.81
10935982--10936024	22	2.0	22	90	9	70	32	13	9	44	1.76
10936045--10936096	5	11.0	5	75	24	51	40	0	0	59	0.97
10936047--10936092	23	2.0	22	91	4	74	41	0	0	58	0.98
10936058--10936096	13	3.0	13	89	10	62	43	0	0	56	0.99
10950971--10951006	16	2.2	16	90	0	54	41	5	22	30	1.76
10953194--10953287	44	2.1	44	82	11	111	36	23	5	35	1.78
10953269--10953323	16	3.4	16	75	9	58	32	20	5	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10960589--10960634	18	2.6	18	83	10	58	43	2	19	34	1.63
10960734--10960797	21	3.0	22	72	9	69	18	18	25	37	1.94
10961941--10961972	13	2.5	13	94	0	55	31	0	12	56	1.37
10968608--10968666	26	2.3	26	81	0	73	18	25	18	37	1.94
10968647--10968745	25	4.0	25	69	12	71	19	26	23	31	1.98
10970641--10970736	48	2.0	48	91	0	156	26	23	15	34	1.95
10972726--10972769	21	2.0	22	86	4	63	31	0	2	65	1.05
10977445--10977561	41	2.8	42	76	14	127	19	21	27	31	1.97
10981478--10981576	28	3.6	27	84	11	112	28	28	12	31	1.92
10984384--10984435	26	2.0	26	96	0	95	11	21	15	51	1.74
10985542--10985571	14	2.1	14	100	0	60	6	6	6	80	1.04
10987649--10987942	142	2.1	142	100	0	588	39	15	15	29	1.88
10996249--10996337	45	2.0	45	95	0	160	37	4	17	40	1.71
10998306--10998351	24	1.9	24	86	8	67	54	0	4	41	1.20
11000856--11000916	22	2.8	22	82	5	70	14	26	19	39	1.90
11005666--11005914	50	4.8	50	85	4	284	20	29	24	26	1.99
11005665--11005914	100	2.4	104	88	6	357	20	29	24	26	1.99
11006009--11006040	13	2.5	13	94	0	55	56	12	0	31	1.37
11006252--11006309	30	1.9	30	89	0	89	31	24	3	41	1.71
11016561--11016620	30	2.0	31	83	3	77	41	0	38	20	1.52
11017465--11017533	31	2.2	31	92	0	111	40	8	14	36	1.77
11019012--11019060	20	2.4	21	83	13	66	55	4	2	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11020755--11020792	19	2.1	19	90	5	60	34	7	2	55	1.43
11020944--11021002	31	1.9	30	86	6	82	35	18	6	38	1.78
11020960--11021032	29	2.4	30	81	6	85	42	15	2	39	1.61
11022247--11022420	63	2.8	63	86	0	222	25	8	32	33	1.86
11035470--11035507	18	2.1	19	85	5	51	52	7	0	39	1.31
11040507--11040576	23	3.3	23	65	19	69	35	12	10	41	1.77
11040505--11040583	41	1.9	41	100	0	158	35	15	10	39	1.81
11044016--11044200	21	8.8	21	70	7	115	45	16	20	16	1.85
11044021--11044217	42	4.7	42	85	5	236	47	16	20	15	1.82
11044559--11044600	17	2.4	18	80	4	50	52	7	2	38	1.42
11048035--11048060	13	2.0	13	100	0	52	46	7	23	23	1.78
11058608--11058645	11	3.5	11	82	10	51	52	0	2	44	1.14
11065944--11065978	4	8.8	4	100	0	70	25	0	22	51	1.48
11066968--11067074	41	2.6	41	93	1	187	28	20	28	22	1.99
11067245--11067316	34	2.1	34	82	5	83	30	11	22	36	1.89
11071672--11071794	41	3.0	41	95	0	219	29	21	28	21	1.98
11071973--11072086	34	3.3	34	78	8	95	33	7	18	40	1.80
11073281--11073323	18	2.4	19	84	11	63	60	2	0	37	1.10
11074954--11074983	7	4.3	7	91	0	51	13	0	10	76	1.01
11075558--11075601	22	2.0	22	91	4	72	50	13	6	29	1.68
11078620--11078676	12	5.0	11	93	4	53	66	0	29	3	1.08
11078632--11078678	3	15.7	3	100	0	94	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11079275--11079321	21	2.3	20	81	3	58	76	2	12	8	1.09
11082175--11082234	31	1.9	31	89	0	93	51	5	16	26	1.65
11085717--11085862	37	4.0	37	93	1	242	24	21	16	36	1.94
11085826--11086094	46	5.6	46	84	10	340	28	22	14	34	1.93
11085869--11086088	52	4.3	52	85	8	299	27	22	14	35	1.93
11085826--11086094	98	2.7	98	93	0	457	28	22	14	34	1.93
11090738--11090866	18	7.2	18	90	0	204	28	23	16	31	1.96
11105172--11105202	8	3.9	8	95	0	53	6	41	0	51	1.27
11105274--11105298	4	6.2	4	100	0	50	24	0	24	52	1.48
11119885--11120132	58	4.3	58	76	9	220	39	13	23	24	1.90
11119886--11120049	29	5.7	29	74	9	156	39	11	23	26	1.89
11119890--11120049	87	1.8	87	84	5	216	39	11	23	26	1.88
11120026--11120132	29	3.7	29	83	2	133	39	14	24	21	1.91
11127852--11127967	57	2.0	57	98	0	223	37	21	5	35	1.76
11129236--11129346	43	2.6	42	77	11	116	31	23	13	31	1.93
11129405--11129435	11	2.8	11	100	0	62	22	29	19	29	1.98
11132059--11132154	46	2.1	46	96	0	174	28	22	16	32	1.96
11136288--11136363	21	3.7	21	92	3	120	36	9	14	39	1.78
11139200--11139255	29	1.9	30	85	7	80	50	10	0	39	1.37
11148210--11148268	22	2.6	23	78	10	68	55	0	3	40	1.16
11148249--11148341	47	2.0	48	80	6	109	50	3	0	46	1.17
11151194--11151228	18	1.9	18	88	0	52	8	8	8	74	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11157362--11157465	50	2.1	50	92	0	172	27	21	19	31	1.97
11184086--11184146	24	2.4	25	78	13	63	40	6	3	49	1.45
11190142--11190184	22	2.0	22	86	9	61	30	23	6	39	1.81
11193523--11193565	18	2.4	16	85	14	50	27	0	4	67	1.10
11199253--11199283	15	2.1	15	93	0	53	35	6	29	29	1.82
11200281--11200459	89	2.0	89	98	0	349	37	5	18	37	1.75
11201457--11201632	37	4.8	37	96	0	298	39	13	21	26	1.90
11201595--11201718	46	2.8	46	91	3	200	33	16	22	27	1.96
11204696--11204788	18	5.2	18	88	0	141	27	25	16	30	1.96
11204696--11204788	36	2.6	36	94	0	159	27	25	16	30	1.96
11217652--11217690	20	1.9	21	84	5	53	0	17	20	61	1.34
11225288--11225327	21	1.9	21	85	10	55	65	0	5	30	1.14
11225288--11225327	20	1.9	19	85	14	53	65	0	5	30	1.14
11225310--11225339	11	2.6	11	94	5	51	60	0	3	36	1.14
11226594--11226618	11	2.3	11	100	0	50	8	56	28	8	1.57
11231116--11231195	41	2.0	41	97	0	151	33	16	32	17	1.92
11238998--11239314	44	7.2	44	65	17	138	30	18	24	26	1.98
11238949--11239613	132	5.0	132	96	0	1123	30	19	24	24	1.98
11239224--11239578	44	8.1	44	65	12	138	29	20	25	24	1.99
11243438--11243475	14	2.5	15	83	12	51	28	10	0	60	1.30
11246579--11246621	20	2.2	20	84	12	54	58	0	0	41	0.98
11254017--11254063	26	1.9	24	83	12	60	63	8	12	14	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11260502--11260572	30	2.4	30	83	9	83	45	5	0	49	1.26
11262519--11262574	21	2.6	22	91	2	87	21	12	25	41	1.88
11267286--11267337	15	3.6	15	80	12	56	44	0	1	53	1.11
11267338--11267528	61	3.2	62	66	20	177	41	2	6	48	1.43
11267217--11267573	120	3.0	120	98	0	687	42	2	5	49	1.39
11267406--11267457	15	3.6	15	80	12	56	44	0	1	53	1.11
11267522--11267556	18	2.0	17	88	5	52	45	0	0	54	0.99
11267510--11267825	156	2.0	157	96	0	580	48	5	3	43	1.42
11267678--11267712	18	2.0	17	88	5	52	45	0	0	54	0.99
11267948--11267983	16	2.2	16	95	0	63	38	33	0	27	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161