genome.fa.s22.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  19  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6311167--6311226	23	2.5	23	86	5	75	41	0	3	55	1.16
6311205--6311266	18	3.2	20	75	20	62	38	0	3	58	1.15
6313438--6313581	54	2.7	54	79	6	157	33	15	29	20	1.94
6313440--6313616	27	6.6	27	76	3	133	32	14	29	23	1.94
6323657--6323694	15	2.5	15	91	0	58	76	0	23	0	0.79
6324382--6324438	26	2.1	27	80	3	62	38	7	1	52	1.39
6330018--6330079	19	3.1	20	80	13	65	56	1	3	38	1.25
6329978--6330122	68	2.1	69	81	6	161	54	4	2	39	1.31
6338279--6338310	14	2.3	14	94	0	55	50	15	6	28	1.68
6342996--6343040	23	1.9	24	86	4	65	35	0	4	60	1.17
6355658--6355918	40	6.6	39	83	5	301	41	28	16	13	1.86
6355669--6355901	120	1.9	120	89	1	360	41	27	16	15	1.88
6362178--6362308	61	2.1	61	80	5	149	36	6	15	41	1.74
6362421--6362556	41	3.3	41	92	0	218	30	17	19	32	1.95
6362421--6362606	82	2.3	82	81	3	196	30	18	20	30	1.97
6365662--6365703	11	4.1	10	85	14	59	52	0	16	30	1.44
6388398--6388660	40	6.6	40	87	3	309	26	28	20	23	1.99
6396344--6396608	40	6.7	40	85	5	286	26	27	21	24	1.99
6396311--6396608	80	3.7	80	79	9	263	25	27	21	25	1.99
6396540--6396617	40	1.9	41	82	10	97	26	28	20	24	1.99
6398135--6398252	44	2.7	42	76	17	125	21	20	29	28	1.98
6405688--6405801	43	2.7	43	76	14	119	21	19	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6411109--6411141	16	2.1	16	100	0	66	12	27	18	42	1.85
6412295--6412327	16	2.1	16	100	0	66	12	27	18	42	1.85
6413612--6413673	31	2.0	32	93	3	108	24	12	8	54	1.64
6413613--6413683	32	2.2	32	87	5	99	22	12	11	53	1.70
6414034--6414078	21	2.2	21	84	4	56	46	8	4	40	1.55
6415648--6415702	25	2.3	23	76	14	58	14	0	12	72	1.12
6416822--6416856	14	2.5	14	95	0	61	34	14	5	45	1.68
6417507--6417542	12	3.0	12	83	0	54	41	33	25	0	1.55
6417957--6418177	49	4.5	49	93	1	313	45	11	10	31	1.75
6417957--6418253	98	3.1	97	86	3	341	47	10	11	30	1.73
6417957--6418253	49	6.1	47	91	1	306	47	10	11	30	1.73
6422083--6422128	4	11.2	4	86	13	67	0	23	0	76	0.79
6422087--6422124	18	2.2	18	95	4	69	0	23	0	76	0.79
6422083--6422137	26	2.1	26	86	3	74	0	29	0	70	0.87
6422083--6422149	30	2.2	30	84	7	82	1	29	0	68	0.98
6424067--6424118	11	3.5	16	73	26	60	28	25	5	40	1.78
6435162--6435199	16	2.3	17	90	4	60	18	0	7	73	1.06
6437138--6437187	3	17.3	3	79	8	59	66	4	0	30	1.10
6437138--6437184	18	2.7	18	87	6	71	65	4	0	29	1.11
6438364--6438438	34	2.2	34	83	4	89	54	2	6	36	1.41
6438494--6438553	20	3.0	19	85	7	66	63	3	1	31	1.20
6438495--6438553	3	20.3	3	73	13	52	64	3	1	30	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6438501--6438554	29	2.0	25	86	13	72	66	3	0	29	1.09
6440190--6440381	100	1.9	100	89	0	294	23	23	22	30	1.99
6440204--6440386	50	3.7	50	71	2	134	22	25	20	31	1.98
6440245--6440395	50	3.0	49	74	5	142	23	22	23	31	1.99
6452831--6452887	3	19.3	3	78	10	64	63	1	1	33	1.15
6452830--6452887	17	3.5	17	88	2	73	62	1	1	34	1.16
6452850--6452887	14	2.9	14	85	14	55	65	0	0	34	0.93
6454260--6454301	22	1.9	22	90	0	66	59	7	0	33	1.25
6454239--6454419	10	18.6	9	65	20	62	58	4	1	35	1.28
6454328--6454574	10	24.3	10	64	14	51	57	2	3	37	1.26
6454239--6454574	19	16.7	19	64	16	99	56	3	2	37	1.30
6454406--6454574	52	3.2	52	100	0	338	57	1	3	37	1.26
6458277--6458434	84	1.9	84	87	0	235	44	12	12	31	1.78
6458489--6458687	85	2.3	84	78	10	206	41	11	13	33	1.81
6461465--6461605	33	4.2	33	66	7	86	31	13	24	31	1.93
6461378--6461608	101	2.3	101	91	1	365	31	13	24	29	1.94
6467549--6467587	19	2.0	20	85	5	53	12	5	7	74	1.20
6470332--6470581	41	6.2	41	76	5	197	22	17	29	30	1.96
6470336--6470551	82	2.7	82	76	11	223	20	17	30	31	1.95
6470347--6470568	119	1.9	119	80	5	261	22	18	28	30	1.97
6470756--6470804	14	3.5	14	82	0	62	18	0	34	46	1.49
6471221--6471269	14	3.4	14	86	5	71	22	0	32	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6471287--6471328	22	1.9	22	90	0	66	21	0	38	40	1.53
6475443--6475686	43	5.7	43	79	9	232	25	15	27	32	1.95
6475443--6475705	129	2.0	129	82	4	316	26	15	26	31	1.95
6477240--6477351	33	3.5	33	77	4	111	16	42	12	28	1.84
6477650--6477972	48	6.7	48	90	3	472	50	9	8	31	1.65
6481890--6481958	27	2.6	27	80	0	84	23	30	26	20	1.98
6482767--6482856	35	2.7	33	81	10	94	47	0	28	23	1.52
6487089--6487294	68	3.0	68	99	0	403	27	14	16	41	1.87
6488006--6488045	2	20.0	2	94	0	71	0	47	0	52	1.00
6493386--6493440	8	6.9	8	93	6	94	36	0	1	61	1.06
6496745--6496799	8	6.9	8	93	6	94	36	0	1	61	1.06
6499179--6499226	24	2.0	25	83	4	62	68	6	6	18	1.32
6501961--6502111	56	2.7	56	89	2	223	34	15	22	27	1.94
6501974--6502130	56	2.9	54	83	11	160	33	15	24	27	1.95
6504099--6504137	13	2.9	14	84	3	53	33	2	2	61	1.23
6505150--6505241	47	1.9	48	89	6	143	48	0	7	43	1.31
6505120--6505326	80	2.6	82	86	11	290	49	2	6	41	1.41
6505231--6505375	47	3.1	47	90	3	215	52	2	6	38	1.41
6508574--6508656	38	2.2	37	91	4	132	34	21	10	32	1.88
6508802--6508835	9	3.6	9	92	8	50	73	0	2	23	0.97
6509193--6509247	19	2.8	19	77	2	56	69	1	5	23	1.19
6509216--6509300	21	3.8	22	73	21	70	62	3	2	31	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6509268--6509309	21	2.0	21	90	0	66	64	2	2	30	1.19
6509758--6509987	109	2.1	107	88	4	338	35	15	16	32	1.91
6510276--6510326	12	4.5	11	78	11	50	58	5	1	33	1.33
6510603--6510803	41	4.9	40	84	4	258	21	22	25	30	1.99
6511315--6511354	15	2.7	14	88	11	62	15	15	15	55	1.71
6513033--6513065	17	1.9	17	100	0	66	24	9	18	48	1.76
6513438--6513616	43	4.3	43	83	7	190	20	18	32	27	1.96
6513659--6513701	22	2.0	22	85	0	59	44	20	18	16	1.87
6513810--6513856	25	1.9	24	91	4	76	53	8	6	31	1.57
6516431--6516660	109	2.1	107	89	1	343	33	16	17	33	1.92
6516961--6517021	12	5.2	12	77	11	56	55	4	1	37	1.31
6522178--6522268	7	12.6	7	73	21	64	67	1	1	30	1.05
6522179--6522268	28	2.8	29	77	22	92	66	1	1	31	1.06
6522179--6522268	35	2.5	37	75	25	93	66	1	1	31	1.06
6522187--6522257	19	3.7	19	83	11	65	64	1	1	32	1.11
6547570--6547647	31	2.5	31	82	0	93	52	14	3	29	1.59
6557257--6557323	33	2.0	33	94	0	116	41	20	10	26	1.85
6565378--6565431	22	2.4	23	90	3	83	50	1	1	46	1.23
6565378--6565440	22	2.8	22	80	2	63	49	3	1	46	1.27
6569603--6570491	445	2.0	445	99	0	1751	34	14	17	33	1.90
6571271--6571307	3	12.3	3	100	0	74	67	0	0	32	0.91
6571636--6571671	6	6.0	6	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6577432--6577465	4	8.0	4	90	9	50	23	0	2	73	0.97
6577415--6577474	22	2.7	22	73	19	61	26	0	6	66	1.16
6581216--6581305	35	2.5	35	85	5	110	38	7	2	51	1.43
6584697--6584735	20	1.9	20	85	15	53	35	0	12	51	1.40
6585128--6585158	6	5.2	6	92	0	53	0	12	16	70	1.16
6587972--6588041	27	2.6	27	80	8	79	25	2	21	50	1.63
6589178--6589219	14	3.0	14	82	0	57	42	16	9	30	1.80
6589143--6589209	34	1.9	35	87	3	100	44	13	10	31	1.77
6603866--6603913	24	2.1	23	92	7	80	22	29	12	35	1.91
6607542--6607592	26	1.9	27	84	11	70	1	31	1	64	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161