genome.fa.s22.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  49  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15022708--15022849	63	2.3	63	79	0	149	26	6	33	33	1.82
15028426--15028450	12	2.1	12	100	0	50	24	36	24	16	1.94
15028611--15028665	9	6.2	9	95	2	85	41	25	10	21	1.86
15039698--15039727	15	2.0	15	100	0	60	33	33	13	20	1.91
15044531--15044604	37	2.0	37	100	0	148	24	27	24	24	2.00
15044793--15045065	136	2.0	136	98	0	528	34	17	26	21	1.95
15046867--15046907	21	2.0	21	100	0	82	34	21	14	29	1.93
15047110--15047159	2	25.0	2	100	0	100	0	50	0	50	1.00
15047264--15047305	21	2.0	21	95	0	75	38	26	14	21	1.91
15052162--15052207	18	2.7	18	90	6	69	32	10	13	43	1.78
15055551--15055603	19	2.8	20	82	8	65	30	33	7	28	1.85
15055980--15056034	28	1.9	29	85	3	76	32	14	21	30	1.93
15063488--15064191	352	2.0	352	86	1	982	25	17	13	43	1.85
15067127--15067170	23	1.9	23	90	0	70	52	0	6	40	1.28
15067831--15067880	24	2.0	25	92	3	84	30	8	14	48	1.72
15069789--15069983	41	4.8	41	84	3	250	32	29	20	17	1.96
15084358--15084399	22	1.9	22	90	9	68	57	9	14	19	1.64
15085773--15085933	24	6.6	24	71	12	112	28	39	7	24	1.82
15085794--15086284	48	8.9	56	72	18	304	28	37	10	23	1.89
15085975--15086089	33	3.5	33	86	0	158	27	37	12	22	1.90
15085885--15086257	114	3.3	110	89	7	486	28	37	11	23	1.89
15086113--15086209	33	2.9	33	84	0	131	30	37	10	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15086212--15086274	24	2.6	24	77	5	65	17	44	15	22	1.86
15085923--15086258	114	2.9	114	93	4	537	27	36	12	23	1.90
15086256--15086363	57	1.9	57	84	0	144	25	39	12	21	1.89
15086440--15086475	18	2.0	18	89	10	56	22	47	5	25	1.73
15086483--15086602	60	2.0	60	96	3	224	20	48	5	26	1.70
15091710--15091797	29	3.0	29	81	3	97	36	4	26	32	1.77
15100098--15100676	290	2.0	290	100	0	1158	32	21	7	38	1.82
15102695--15102751	26	2.1	28	90	6	91	38	22	10	28	1.87
15110948--15110997	5	10.0	5	97	0	73	34	0	6	60	1.21
15112508--15112540	16	1.9	18	88	11	52	51	6	0	42	1.26
15114524--15114595	23	2.9	26	64	19	62	37	22	4	36	1.73
15114524--15114621	49	2.0	49	100	0	196	34	22	4	38	1.73
15114534--15114613	26	3.2	26	66	16	78	37	20	3	38	1.70
15115283--15115335	19	2.8	19	80	11	56	15	5	7	71	1.27
15115277--15115325	18	2.6	18	79	17	55	12	6	8	73	1.24
15121191--15121314	63	2.0	63	88	0	185	35	22	11	30	1.89
15126252--15126349	44	2.2	45	88	1	144	26	27	15	30	1.96
15126594--15127021	45	9.6	44	68	8	195	25	24	19	30	1.98
15126584--15127055	89	5.3	89	94	0	784	26	23	19	30	1.98
15127825--15129348	762	2.0	762	96	0	2823	23	25	18	32	1.97
15137292--15137330	20	2.0	20	90	10	62	15	23	5	56	1.59
15144159--15144202	20	2.1	21	87	4	63	22	11	0	65	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15150080--15150137	26	2.2	26	100	0	116	58	24	3	13	1.51
15151201--15151238	20	2.0	20	89	5	60	28	10	0	60	1.30
15158322--15158384	26	2.5	24	78	12	72	15	23	19	41	1.90
15160657--15160710	28	1.9	28	85	7	74	14	24	20	40	1.90
15179314--15179410	34	2.9	34	77	7	108	20	22	12	44	1.85
15182395--15182477	33	2.5	32	81	9	96	27	28	14	28	1.95
15182387--15182612	101	2.2	101	81	0	254	28	23	14	34	1.93
15189955--15190096	33	4.2	33	70	10	90	30	22	14	33	1.93
15189921--15190131	101	2.1	101	83	3	255	28	21	15	34	1.94
15190822--15190862	17	2.3	18	87	8	57	73	9	2	14	1.19
15200492--15200771	142	2.0	142	94	0	497	37	13	17	31	1.89
15200945--15201142	40	4.9	40	81	3	202	31	21	21	24	1.98
15201193--15201301	40	2.7	40	84	1	128	32	21	22	24	1.98
15201047--15201411	149	2.5	145	84	5	471	32	19	22	25	1.98
15201234--15201510	104	2.6	105	83	8	325	32	18	24	24	1.97
15201725--15201775	21	2.5	21	78	9	61	15	0	35	49	1.45
15201725--15201783	21	2.8	20	72	7	55	16	0	35	47	1.47
15201974--15202138	14	11.6	14	70	8	68	21	0	30	47	1.56
15201993--15202059	34	1.9	35	90	3	109	20	0	28	50	1.48
15202072--15202138	7	9.4	7	75	3	53	22	0	31	46	1.52
15202093--15202134	15	2.9	15	82	3	50	23	0	28	47	1.52
15201967--15202136	21	8.1	20	71	10	97	22	0	29	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15204645--15204700	9	6.2	9	75	8	51	48	19	0	32	1.49
15204742--15204868	21	6.4	21	68	17	92	45	17	0	36	1.54
15204762--15204929	9	18.0	9	72	15	101	46	19	0	33	1.54
15204772--15204927	42	3.3	46	80	13	167	46	19	0	33	1.55
15204742--15204941	98	2.1	93	88	7	287	46	17	0	36	1.52
15206469--15206497	14	2.1	14	93	6	51	34	0	10	55	1.34
15207309--15207465	43	3.8	43	74	13	148	28	15	21	34	1.94
15208174--15208202	5	5.8	5	100	0	58	20	0	0	79	0.74
15217285--15217312	11	2.5	11	100	0	56	46	0	0	53	1.00
15219143--15219350	27	7.7	27	81	2	229	38	14	25	22	1.91
15219143--15219354	81	2.6	81	82	3	255	39	14	24	21	1.90
15219479--15219530	27	1.9	27	84	0	68	38	15	19	26	1.91
15221319--15221356	5	7.6	5	96	0	67	36	0	21	42	1.53
15221612--15221704	36	2.6	37	82	5	118	16	10	30	43	1.82
15227902--15228001	50	2.0	50	86	0	137	37	16	26	21	1.93
15251912--15251953	18	2.3	18	100	0	84	33	0	4	61	1.17
15254337--15254381	21	2.1	21	95	0	81	40	6	13	40	1.71
15265468--15265499	7	4.6	7	100	0	64	25	0	75	0	0.81
15267636--15267689	23	2.2	24	80	12	65	35	1	5	57	1.33
15280178--15280215	20	1.9	20	88	0	58	26	18	26	28	1.98
15280189--15280227	20	2.0	20	85	10	53	23	23	25	28	1.99
15281434--15281476	21	2.2	19	83	8	50	72	4	9	13	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15282997--15283043	24	2.0	24	83	8	60	27	2	21	48	1.61
15283555--15283613	29	2.0	29	90	0	91	25	23	15	35	1.94
15299532--15299609	37	2.1	37	95	0	138	30	24	16	28	1.97
15303965--15304085	63	1.9	63	96	0	224	29	27	19	23	1.98
15307106--15307137	16	2.0	16	93	0	55	25	15	0	59	1.36
15307359--15307502	51	2.8	52	78	8	168	31	27	18	22	1.97
15307760--15307790	16	1.9	16	93	0	53	45	9	9	35	1.70
15311342--15311371	15	1.9	16	93	6	53	33	0	23	43	1.54
15312097--15312137	16	2.6	16	92	0	64	46	4	4	43	1.46
15313613--15313676	25	2.6	26	82	9	89	53	20	7	18	1.69
15315474--15315503	9	3.3	9	100	0	60	23	10	10	56	1.62
15315693--15315806	45	2.5	45	81	2	122	42	18	20	18	1.89
15315968--15316093	56	2.2	57	90	4	193	44	12	22	20	1.85
15325874--15325904	16	1.9	16	93	0	53	32	0	25	41	1.56
15328733--15328897	37	4.2	37	79	17	165	27	20	15	35	1.93
15328801--15329949	46	24.6	46	95	2	1983	31	21	13	33	1.92
15340750--15340852	20	5.2	20	68	0	80	20	33	19	27	1.97
15340673--15340877	81	2.6	80	86	3	261	20	27	19	32	1.97
15340673--15340877	40	5.1	40	86	2	261	20	27	19	32	1.97
15342102--15342136	17	2.0	18	88	5	54	74	5	2	17	1.14
15344742--15344919	27	6.6	27	83	3	205	26	15	28	29	1.96
15344743--15344898	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15344739--15344919	82	2.2	81	83	2	229	27	15	27	29	1.96
15352805--15352982	27	6.6	27	83	3	205	26	15	28	29	1.96
15352806--15352961	82	1.9	81	88	3	233	26	15	28	29	1.96
15352802--15352982	82	2.2	81	83	2	229	27	15	27	29	1.96
15354819--15354851	16	2.0	17	88	5	50	33	12	21	33	1.90
15357129--15357173	20	2.2	20	80	7	56	60	6	4	28	1.42
15358676--15358736	20	3.0	20	76	9	70	13	24	21	40	1.88
15361584--15361618	11	3.3	11	96	4	63	25	17	22	34	1.96
15375086--15375136	22	2.3	23	86	6	70	37	5	1	54	1.36
15375641--15376080	124	3.5	124	94	1	731	31	17	22	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161