genome.fa.s22.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  153  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47675558--47675592	3	11.7	3	100	0	70	65	0	0	34	0.93
47675924--47675949	3	8.7	3	100	0	52	65	0	0	34	0.93
47689425--47689514	28	3.1	28	79	6	83	24	14	23	37	1.92
47693602--47693653	28	1.9	26	84	7	68	34	7	3	53	1.48
47695062--47695240	27	6.6	27	82	5	182	29	28	16	26	1.97
47695083--47695238	82	1.9	81	86	3	224	28	28	16	26	1.97
47697064--47697118	18	3.2	16	82	12	65	45	10	14	29	1.79
47697064--47697116	17	3.1	17	83	5	70	45	11	13	30	1.78
47697687--47697721	19	1.9	18	88	11	54	2	14	5	77	1.07
47697711--47697778	33	2.1	33	83	5	84	0	25	2	72	0.99
47697730--47697771	13	3.2	13	78	21	52	0	23	0	76	0.79
47697876--47697932	19	2.8	21	74	15	66	3	29	0	66	1.08
47697859--47697917	23	2.5	24	78	10	59	3	30	0	66	1.08
47698804--47699158	75	4.7	74	82	8	403	35	18	16	29	1.93
47698804--47699161	149	2.4	152	84	6	444	35	18	16	29	1.93
47705238--47705309	37	1.9	37	85	2	99	29	19	18	33	1.95
47706765--47706802	19	2.0	19	100	0	76	10	26	21	42	1.85
47707181--47707289	42	2.6	42	89	2	157	33	11	17	36	1.87
47707379--47707498	24	5.0	24	79	6	136	25	20	24	30	1.99
47707379--47707483	48	2.2	48	91	3	167	23	19	26	30	1.98
47714863--47714954	45	2.0	45	87	4	132	14	20	26	39	1.90
47715402--47715619	27	8.1	26	79	15	203	45	16	18	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47715409--47715619	54	3.9	54	81	9	245	45	16	19	18	1.86
47715402--47715612	81	2.6	81	81	8	261	45	16	18	18	1.86
47715402--47715641	81	3.0	81	80	7	240	44	16	19	20	1.87
47716789--47716822	15	2.3	15	100	0	68	50	11	5	32	1.63
47720539--47720616	39	2.0	39	97	0	147	37	5	28	29	1.79
47722832--47723178	27	12.9	27	80	1	338	44	21	17	16	1.86
47722831--47723132	107	2.8	108	82	4	371	45	22	16	15	1.85
47723338--47723391	26	2.1	26	85	0	72	18	22	22	37	1.95
47723487--47723553	28	2.4	28	85	2	91	26	23	20	28	1.99
47723503--47723584	33	2.8	28	74	16	83	30	23	23	23	1.99
47739183--47739224	22	2.0	21	86	9	59	14	35	0	50	1.43
47740809--47740861	21	2.4	21	87	6	70	37	1	0	60	1.08
47741751--47741816	15	4.8	14	70	17	57	56	0	0	43	0.99
47741751--47741820	14	5.1	14	69	22	58	54	0	0	45	0.99
47745294--47745499	103	2.0	103	91	1	333	37	26	14	21	1.91
47752834--47752897	28	2.3	28	94	0	110	37	45	6	10	1.65
47752834--47752902	13	4.8	15	74	25	69	36	46	7	10	1.65
47753203--47753232	12	2.4	13	94	5	53	13	13	0	73	1.10
47754355--47754397	20	2.2	20	87	4	61	34	4	6	53	1.49
47754359--47754405	19	2.4	19	83	13	60	36	4	6	53	1.46
47763256--47763304	18	2.8	17	82	17	57	34	0	20	44	1.52
47768850--47768893	22	2.0	22	95	0	79	20	4	20	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47769101--47769207	32	3.3	32	92	0	169	33	17	17	30	1.94
47774853--47774896	23	1.9	23	85	0	61	56	2	0	40	1.11
47776960--47776990	9	3.4	9	100	0	62	32	19	12	35	1.90
47777259--47777301	18	2.5	17	88	3	59	37	0	0	62	0.95
47777432--47777463	7	4.6	7	100	0	64	59	0	0	40	0.97
47783259--47783374	57	2.0	57	98	0	223	50	10	6	31	1.63
47788646--47788727	32	2.6	32	82	3	96	29	24	12	34	1.91
47794086--47794125	20	2.0	20	85	0	53	27	30	10	32	1.89
47796647--47796778	61	2.2	58	85	5	176	40	3	4	50	1.41
47797534--47797558	13	1.9	13	100	0	50	8	0	24	68	1.16
47799215--47799316	41	2.5	41	87	3	134	28	18	25	27	1.98
47803345--47803389	9	5.0	9	86	0	63	44	2	28	24	1.66
47803706--47803750	16	2.8	16	86	3	54	31	4	2	62	1.27
47803917--47804012	34	3.2	27	68	23	75	27	5	5	62	1.38
47809746--47809859	57	2.0	57	100	0	228	36	15	28	19	1.92
47813804--47813837	16	2.2	15	89	5	50	44	0	0	55	0.99
47817894--47817978	44	1.9	44	95	0	152	37	7	14	41	1.73
47830750--47831012	81	3.3	79	78	7	262	42	10	22	24	1.85
47830756--47831016	27	9.7	26	77	5	209	42	11	22	24	1.86
47834631--47834737	50	2.1	51	89	5	173	45	6	23	24	1.76
47839879--47840052	27	6.4	28	74	6	103	31	14	26	28	1.95
47850608--47850899	50	5.7	50	77	7	227	28	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47850656--47850850	100	2.0	100	85	4	268	27	20	29	22	1.99
47858460--47858490	7	4.4	7	100	0	62	48	38	0	12	1.42
47861768--47861839	36	2.0	36	97	0	135	25	20	18	36	1.95
47863540--47863655	57	2.0	57	89	0	178	42	7	20	29	1.80
47872683--47872713	15	2.1	15	94	5	55	19	0	9	70	1.14
47873164--47873189	11	2.4	11	100	0	52	42	0	15	42	1.47
47880220--47880256	14	2.6	14	95	0	65	24	32	24	18	1.97
47886117--47886190	38	2.0	38	89	5	116	44	17	17	20	1.87
47888662--47889323	88	7.5	88	84	1	671	28	20	23	27	1.99
47888685--47888829	43	3.3	43	67	11	114	31	19	23	25	1.98
47893152--47893256	44	2.4	44	77	3	122	30	17	25	26	1.97
47893187--47893664	132	3.6	131	88	2	688	30	20	24	24	1.98
47893806--47893902	51	1.9	51	91	0	158	32	14	21	30	1.93
47893829--47893974	72	2.0	72	86	2	204	36	13	25	24	1.92
47894059--47894159	51	2.0	51	92	0	166	30	15	23	29	1.96
47893669--47894194	261	2.0	261	85	1	714	31	16	24	27	1.96
47894099--47894626	72	7.3	72	98	0	984	32	16	25	26	1.96
47894531--47894840	122	2.5	124	88	2	455	33	15	24	26	1.95
47894603--47894717	51	2.3	50	83	6	133	33	15	24	26	1.95
47894928--47895094	45	3.8	44	78	8	158	29	22	20	27	1.98
47894927--47895126	45	4.5	45	74	10	151	30	21	20	28	1.98
47895267--47895392	44	2.9	43	80	7	103	30	15	23	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47895427--47895527	44	2.3	44	84	0	130	28	19	23	27	1.99
47895449--47895561	44	2.6	44	84	2	129	30	21	18	29	1.97
47895262--47895617	182	2.0	182	90	0	559	30	18	20	30	1.97
47895750--47895821	27	2.6	27	86	2	99	34	12	38	13	1.83
47899956--47900126	85	2.0	85	100	0	342	21	11	9	57	1.63
47903127--47903324	97	2.0	98	88	0	290	28	20	17	33	1.95
47903184--47903734	141	4.0	141	88	5	749	28	21	18	31	1.97
47903338--47903547	54	4.3	53	68	23	138	29	19	18	32	1.95
47903383--47903591	43	4.6	44	65	16	111	29	20	16	33	1.95
47903374--47903509	44	3.1	44	71	7	116	29	20	15	34	1.93
47903859--47903944	44	2.0	43	81	2	100	18	26	22	32	1.97
47903989--47904256	87	3.1	87	87	0	385	24	25	22	27	2.00
47905452--47905490	21	1.9	20	89	5	60	15	15	0	69	1.20
47905450--47905499	20	2.4	21	80	9	59	14	20	0	66	1.26
47905893--47905929	20	2.0	20	89	10	60	0	16	8	75	1.02
47905928--47905961	6	5.7	6	100	0	68	14	0	14	70	1.17
47905921--47905969	18	2.7	18	83	3	71	12	2	12	73	1.18
47912105--47912209	3	35.0	3	100	0	210	33	0	0	66	0.92
47916188--47916225	20	1.9	20	88	0	58	47	5	5	42	1.48
47916895--47916946	24	2.2	24	89	0	77	34	3	7	53	1.48
47921159--47921208	25	2.0	25	92	0	82	26	22	26	26	2.00
47927574--47927602	15	1.9	15	100	0	58	34	3	34	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47935358--47935460	52	2.0	52	84	0	134	40	12	24	22	1.88
47936225--47936263	11	3.5	11	92	0	60	30	41	2	25	1.69
47937337--47937400	27	2.4	27	81	0	74	12	15	34	37	1.85
47944532--47944599	34	2.0	34	97	0	127	30	8	16	44	1.78
47949798--47949910	40	2.8	39	78	4	100	38	19	17	23	1.93
47949973--47950238	41	6.5	41	84	4	297	21	18	25	33	1.96
47949973--47950233	81	3.2	81	82	4	283	20	19	26	34	1.96
47972970--47973027	27	2.2	25	85	11	73	34	6	1	56	1.36
47973051--47973090	18	2.2	18	91	8	64	35	0	0	65	0.93
47974910--47974948	3	13.3	3	83	5	53	69	2	2	25	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161