genome.fa.s22.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  65  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20216863--20217110	129	1.9	127	81	8	295	28	31	16	23	1.96
20217014--20217165	43	3.6	41	72	15	121	32	27	14	25	1.95
20219558--20219628	32	2.2	33	90	10	110	69	12	4	14	1.34
20220200--20220249	20	2.5	20	100	0	100	66	4	8	22	1.35
20221146--20221233	20	4.4	20	64	8	54	45	1	5	47	1.33
20222675--20222951	41	6.8	41	82	6	296	29	29	18	22	1.98
20222675--20222951	121	2.3	122	86	4	371	29	29	18	22	1.98
20223226--20223474	125	2.0	125	91	0	399	30	22	16	29	1.96
20228734--20228787	5	10.8	5	74	21	51	83	0	16	0	0.65
20228733--20228789	21	2.9	19	75	10	60	84	0	15	0	0.63
20228733--20228782	11	4.7	10	83	11	64	84	0	16	0	0.63
20228733--20228791	8	8.0	7	75	17	57	83	0	16	0	0.66
20229672--20230149	44	10.6	44	71	12	283	29	18	21	29	1.97
20229658--20230156	181	2.7	181	85	3	646	30	18	21	29	1.97
20231685--20231767	26	3.2	26	86	3	105	30	2	2	65	1.18
20231702--20231852	26	6.0	25	70	16	87	32	3	2	60	1.29
20231838--20231959	25	4.9	26	70	12	85	25	1	6	66	1.25
20231802--20231994	40	4.9	41	70	18	124	27	2	5	63	1.30
20234443--20234489	11	4.0	13	84	13	50	46	0	6	46	1.28
20235812--20235980	29	5.8	29	81	3	178	38	13	26	21	1.91
20235812--20235980	59	2.9	58	81	2	178	38	13	26	21	1.91
20237117--20237181	30	2.2	30	91	0	103	15	23	32	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20238007--20238044	15	2.5	15	87	12	51	23	26	7	42	1.81
20239431--20239950	262	2.0	262	94	0	916	29	12	23	35	1.91
20241196--20241240	20	2.2	20	84	0	63	24	17	31	26	1.97
20243111--20243145	18	1.9	18	88	11	54	11	17	2	68	1.31
20244270--20244305	18	2.1	17	90	10	56	11	16	2	69	1.29
20244350--20244375	13	2.0	13	100	0	52	23	7	7	61	1.49
20245734--20245778	20	2.2	20	84	0	63	24	17	31	26	1.97
20249963--20250011	24	2.0	24	100	0	98	28	12	20	38	1.89
20260201--20260533	92	3.6	92	97	2	627	41	12	13	33	1.81
20261319--20261377	25	2.4	25	85	0	73	37	13	23	25	1.92
20261333--20261389	25	2.3	23	77	16	60	31	15	26	26	1.96
20268685--20268967	41	6.9	41	89	0	413	21	21	27	28	1.99
20269821--20269907	33	2.7	32	85	5	104	21	2	39	36	1.66
20269888--20269913	7	3.7	7	100	0	52	26	0	26	46	1.53
20269834--20269907	33	2.3	33	88	6	107	22	2	39	35	1.69
20270873--20271015	69	2.0	69	86	5	196	27	41	3	26	1.72
20273687--20274076	43	8.8	43	77	8	271	22	17	28	31	1.97
20273901--20274003	54	1.9	54	89	0	161	17	18	29	34	1.94
20292122--20292169	23	2.1	23	96	0	87	52	4	6	37	1.46
20292378--20292633	88	2.9	87	78	6	214	37	14	26	21	1.91
20292405--20292623	117	1.9	117	83	5	291	38	12	27	21	1.89
20292378--20292634	29	8.8	29	79	4	232	37	14	26	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20297093--20297171	27	2.9	27	86	0	113	40	24	17	17	1.91
20300375--20300551	29	6.1	29	83	6	223	37	14	27	20	1.92
20300375--20300551	59	3.0	57	83	9	214	37	14	27	20	1.92
20300355--20300551	88	2.3	87	84	6	256	37	14	27	20	1.91
20310223--20310253	16	1.9	16	93	0	53	58	9	0	32	1.31
20312493--20312526	13	2.6	13	85	0	50	47	5	0	47	1.26
20313838--20313882	18	2.6	18	77	22	51	46	0	0	53	1.00
20315886--20315913	5	5.6	5	100	0	56	64	0	17	17	1.30
20316995--20317021	3	9.0	3	100	0	54	33	33	0	33	1.58
20323213--20323285	27	2.7	27	74	4	76	24	36	31	6	1.82
20323341--20323397	10	5.7	10	85	0	78	71	0	28	0	0.86
20323321--20323405	30	2.8	30	96	0	152	67	0	30	2	1.04
20323315--20323421	20	5.4	20	76	12	89	63	0	34	1	1.05
20323390--20323460	6	11.5	6	79	10	63	56	2	40	0	1.14
20323387--20323481	45	2.2	43	80	10	106	56	2	41	0	1.11
20323502--20323540	19	2.0	20	90	5	62	20	0	10	69	1.17
20323694--20324268	159	3.6	159	91	3	926	53	8	10	27	1.64
20323694--20324268	316	1.8	318	91	2	960	53	8	10	27	1.64
20334987--20335027	6	6.7	6	86	5	55	14	0	19	65	1.26
20334987--20335027	19	2.2	19	86	4	57	14	0	19	65	1.26
20335247--20335302	20	2.7	21	86	8	80	12	21	21	44	1.85
20337089--20337140	22	2.4	22	80	0	59	46	5	11	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20339614--20339644	13	2.4	13	94	0	53	12	32	32	22	1.92
20340254--20340470	43	5.1	43	82	7	221	33	24	17	24	1.96
20340669--20340694	12	2.2	12	100	0	52	61	15	0	23	1.33
20341132--20341162	13	2.4	13	94	0	53	12	32	32	22	1.92
20341772--20341988	43	5.1	43	82	7	221	33	24	17	24	1.96
20342187--20342212	12	2.2	12	100	0	52	61	15	0	23	1.33
20345400--20345472	19	3.8	19	88	0	110	39	8	13	38	1.75
20345400--20345498	19	4.9	21	83	6	93	38	7	15	39	1.74
20351287--20351916	132	4.8	132	94	0	1057	28	19	23	28	1.98
20352244--20352392	19	7.8	19	89	0	208	39	9	13	37	1.77
20352251--20352397	38	3.8	38	89	0	240	40	8	12	38	1.74
20356005--20356056	14	3.7	14	75	10	52	32	42	0	25	1.55
20356034--20356189	81	1.9	83	92	2	262	42	28	0	28	1.60
20356881--20356977	40	2.4	39	80	8	97	20	19	19	40	1.92
20369380--20369600	63	3.5	62	81	3	246	23	8	33	33	1.86
20369379--20369608	126	1.8	126	83	3	302	23	8	32	34	1.86
20370220--20370367	41	3.6	41	82	0	188	33	18	28	18	1.95
20375613--20375754	42	3.3	42	88	3	185	30	21	21	26	1.99
20375615--20375754	43	3.3	42	88	5	192	30	21	22	25	1.98
20375768--20375851	43	1.9	42	85	4	105	27	20	16	35	1.94
20376220--20376251	12	2.7	12	95	0	55	3	40	12	43	1.58
20376241--20376309	21	3.3	21	85	0	84	2	40	18	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20377894--20377987	44	2.1	44	90	3	145	36	8	32	22	1.84
20378730--20378780	23	2.2	24	82	10	61	43	3	0	52	1.19
20378745--20378780	16	2.3	17	86	13	51	41	2	0	55	1.14
20379158--20379214	15	3.9	14	84	11	62	45	35	0	19	1.50
20379528--20379737	114	1.8	114	81	6	264	29	21	17	31	1.96
20379695--20380087	207	1.9	206	86	5	569	25	24	18	31	1.97
20380053--20380158	54	2.0	54	90	0	167	25	20	17	35	1.95
20380104--20380361	113	2.3	113	79	2	268	27	21	16	34	1.94
20392512--20392566	28	2.0	28	96	0	101	23	21	5	49	1.70
20393773--20393824	16	3.4	16	80	20	74	51	5	9	32	1.58
20393773--20393835	30	2.1	30	100	0	126	52	6	9	31	1.59
20393785--20393835	14	3.5	14	80	19	68	52	5	9	31	1.58
20405751--20405798	24	2.0	25	84	12	64	16	0	8	75	1.04
20413919--20413985	28	2.4	28	78	16	77	73	5	8	11	1.25
20413938--20413984	21	2.2	22	85	11	62	76	4	12	6	1.12
20413897--20413996	33	3.1	33	70	18	84	72	5	12	11	1.27
20413993--20414022	15	2.0	15	93	0	51	73	0	23	3	0.98
20414886--20414936	7	7.0	7	76	14	50	72	0	11	15	1.12
20414887--20414916	13	2.3	13	94	0	51	73	0	10	16	1.09
20416178--20417343	88	13.3	88	85	1	1532	26	23	25	23	2.00
20420867--20420917	21	2.5	21	81	6	61	62	1	1	33	1.17
20429565--20429611	23	2.0	24	91	8	78	59	4	6	29	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20430207--20430282	21	3.7	21	85	7	120	34	14	11	39	1.83
20430184--20430283	21	4.8	20	85	7	105	36	16	10	38	1.82
20430497--20430614	44	2.7	44	84	13	170	25	27	20	26	1.99
20430487--20430614	45	2.9	45	84	12	174	25	28	18	27	1.98
20430746--20431218	44	10.8	44	64	13	202	24	26	19	29	1.99
20430709--20431244	132	4.1	132	96	0	928	24	25	19	30	1.98
20436836--20437032	98	2.0	98	95	0	358	37	25	10	27	1.88
20437670--20437713	23	1.9	23	90	0	70	56	4	9	29	1.50
20438314--20438371	22	2.6	22	84	7	73	43	17	3	36	1.66
20438327--20438445	19	5.8	19	78	11	103	36	15	9	38	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161