genome.fa.s22.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  112  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35600663--35600733	5	14.6	5	74	21	62	38	1	4	56	1.28
35600691--35600733	19	2.3	19	92	8	70	41	2	0	55	1.12
35600738--35600777	18	2.2	19	90	4	64	80	2	15	2	0.93
35611371--35611521	45	3.4	44	81	7	180	26	19	11	42	1.86
35612307--35612339	14	2.3	15	94	5	59	18	0	9	72	1.10
35616427--35616462	12	3.0	12	100	0	72	50	8	0	41	1.33
35621767--35621810	21	2.2	21	88	8	65	54	11	4	29	1.56
35623916--35624058	63	2.3	63	88	1	207	21	23	30	24	1.99
35625660--35625722	10	6.4	10	71	23	53	46	1	1	50	1.20
35625658--35625741	26	3.4	25	78	17	102	46	3	1	48	1.27
35626198--35626222	6	4.2	6	100	0	50	20	0	0	80	0.72
35626374--35626410	15	2.3	17	86	13	60	62	0	0	37	0.96
35634605--35634634	12	2.5	12	94	0	51	46	0	0	53	1.00
35638065--35638140	38	2.0	38	100	0	152	42	5	10	42	1.62
35639294--35639343	20	2.6	19	84	12	66	56	0	2	42	1.11
35639396--35639507	21	5.2	21	71	13	77	48	0	0	50	1.06
35639415--35639514	33	3.1	33	70	21	86	49	1	0	50	1.07
35639410--35639518	21	5.0	21	68	25	68	48	0	0	50	1.07
35643622--35643724	24	4.2	25	75	16	90	18	30	19	32	1.96
35643622--35643699	25	3.2	24	78	5	84	16	30	20	32	1.95
35643667--35643809	25	5.8	25	71	4	85	20	27	19	32	1.97
35651026--35651118	45	2.1	45	95	0	168	19	16	16	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35659997--35660077	37	2.1	38	81	4	92	40	9	6	43	1.63
35662622--35662681	22	2.8	22	73	16	63	18	6	21	53	1.67
35662652--35662817	46	3.3	46	65	22	125	22	6	21	50	1.71
35662729--35662788	22	2.8	22	73	16	63	18	6	21	53	1.67
35662616--35662845	107	2.1	107	100	0	460	25	5	22	46	1.74
35666859--35666986	44	2.8	44	70	16	109	45	3	3	46	1.40
35667173--35667224	15	3.6	15	80	12	56	44	0	1	53	1.11
35667228--35667415	61	3.1	60	71	11	195	43	1	7	47	1.41
35667289--35667323	18	2.0	17	88	5	52	45	0	0	54	0.99
35667159--35667467	120	2.6	120	97	0	573	44	0	5	49	1.32
35667159--35667428	59	4.5	61	71	13	220	43	1	5	49	1.34
35667409--35667443	18	2.0	17	88	5	52	45	0	0	54	0.99
35667676--35667724	16	3.1	16	88	11	82	20	30	6	42	1.76
35667845--35667949	44	2.5	40	76	18	106	31	30	4	33	1.78
35667855--35667951	45	2.2	45	88	5	144	31	29	5	32	1.80
35667492--35667963	255	1.9	255	96	0	874	32	23	6	37	1.81
35667931--35667963	16	2.1	16	100	0	66	21	36	6	36	1.78
35669630--35669695	3	22.3	3	75	3	62	30	3	1	65	1.17
35669625--35669698	18	4.2	18	80	1	78	29	2	1	66	1.14
35671658--35671749	47	2.0	47	91	0	148	48	13	7	30	1.69
35675929--35675958	15	2.0	15	100	0	60	26	26	0	46	1.53
35680651--35680765	35	3.3	35	70	11	83	36	12	11	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35680675--35680756	17	4.8	17	72	14	69	34	10	14	40	1.81
35680997--35681257	124	2.1	124	86	0	360	28	18	22	29	1.97
35686933--35687000	4	16.0	4	82	14	50	73	7	19	0	1.06
35686936--35686964	5	6.0	5	96	4	51	62	17	20	0	1.33
35686936--35686996	15	4.3	14	76	17	54	72	8	19	0	1.10
35687888--35688021	39	3.4	40	71	13	98	26	14	24	34	1.94
35691782--35691835	5	10.8	5	95	0	81	40	0	12	46	1.42
35695365--35695423	27	2.2	27	90	0	91	30	27	23	18	1.98
35702286--35702373	40	2.2	41	81	4	106	29	2	10	57	1.44
35702423--35702523	34	3.0	34	88	0	148	18	7	10	62	1.52
35705990--35706029	20	2.0	21	90	5	64	37	0	2	60	1.11
35709126--35709190	33	2.0	33	84	6	87	43	0	3	53	1.16
35716612--35716656	24	1.9	23	81	4	54	33	15	15	35	1.89
35717864--35717958	27	3.5	27	82	2	111	20	25	14	40	1.90
35718054--35718128	27	2.8	26	82	8	87	32	28	12	28	1.92
35718065--35718137	27	2.7	27	89	0	101	31	27	10	30	1.91
35720462--35721059	134	4.5	133	82	4	641	33	17	11	37	1.85
35720465--35721059	268	2.2	267	81	4	707	33	17	10	37	1.85
35722520--35722567	24	2.0	24	84	8	62	18	22	22	35	1.96
35722554--35722666	25	4.6	24	69	7	75	23	24	19	32	1.97
35745887--35745934	16	3.0	16	80	14	55	64	0	2	33	1.05
35746915--35746974	28	2.1	28	100	0	120	26	25	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35746953--35747177	110	2.1	109	95	1	414	23	28	17	30	1.97
35747492--35747633	40	3.5	40	82	0	149	33	18	20	28	1.96
35747571--35747862	114	2.5	115	83	1	361	33	17	21	26	1.96
35747685--35747767	40	2.0	40	81	2	94	37	18	20	24	1.94
35747801--35747895	41	2.3	41	82	5	104	31	20	22	26	1.98
35747596--35747863	115	2.3	113	82	3	338	34	17	21	26	1.96
35747715--35748128	157	2.7	156	85	5	552	32	16	22	27	1.96
35748248--35748287	14	2.9	14	88	0	62	22	0	22	55	1.44
35748256--35748287	7	4.6	7	96	0	55	21	0	18	59	1.38
35748460--35748677	7	31.1	7	72	3	98	22	1	28	47	1.62
35749328--35749370	22	1.9	23	85	4	61	41	2	23	32	1.67
35750293--35750333	20	2.1	20	86	4	57	14	14	7	63	1.50
35752466--35752631	43	3.9	43	80	6	176	26	17	23	32	1.97
35753908--35754112	70	2.9	70	98	0	394	23	15	9	51	1.73
35756351--35756420	10	7.1	9	72	15	50	60	1	4	34	1.25
35770192--35770297	47	2.3	47	83	1	124	33	6	14	45	1.70
35770215--35770306	47	2.0	47	91	0	148	30	7	13	48	1.69
35772269--35772334	3	22.3	3	75	3	62	65	1	3	30	1.17
35772266--35772339	18	4.2	18	78	3	78	66	1	2	29	1.14
35773309--35773342	17	1.9	17	88	5	50	44	2	5	47	1.42
35773404--35773436	11	3.1	11	86	4	50	69	18	0	12	1.18
35775094--35775150	25	2.3	25	93	0	96	33	24	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35776974--35777483	255	2.0	255	96	0	939	36	13	22	27	1.92
35778259--35778384	66	1.9	66	85	0	171	27	20	27	23	1.99
35782513--35782545	15	2.1	16	88	5	50	18	3	15	63	1.43
35787165--35787216	26	2.0	26	100	0	104	34	11	19	34	1.88
35797481--35797533	28	1.9	28	85	11	74	54	5	0	39	1.24
35833391--35833754	183	2.0	183	92	1	613	30	15	9	45	1.77
35834567--35834598	15	2.1	15	94	0	55	68	9	6	15	1.36
35837207--35837402	35	5.6	35	78	6	182	36	28	14	19	1.92
35837207--35837402	70	2.8	70	80	3	225	36	28	14	19	1.92
35844681--35844834	35	4.4	35	80	1	175	38	26	14	20	1.91
35847353--35847393	21	2.0	21	85	0	55	58	7	7	26	1.51
35850060--35850174	21	5.2	21	61	19	54	46	14	18	20	1.83
35850022--35850211	90	2.1	89	88	2	283	45	16	17	20	1.86
35850021--35850186	45	3.7	45	93	0	289	44	16	18	19	1.87
35850038--35850231	90	2.2	90	85	4	259	44	18	18	19	1.87
35860085--35860115	5	6.2	5	100	0	62	38	19	19	22	1.93
35864409--35864446	19	2.0	20	85	10	53	63	7	2	26	1.35
35864399--35864468	21	3.4	18	74	18	50	58	8	2	30	1.42
35865196--35865296	42	2.4	42	86	6	134	24	27	26	20	1.99
35865356--35865385	12	2.5	12	94	0	51	6	30	40	23	1.80
35866241--35866360	35	3.4	35	79	2	134	37	30	15	17	1.90
35870387--35870443	28	2.0	28	100	0	114	28	14	3	54	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35870852--35871013	84	1.9	84	96	0	297	36	3	14	45	1.62
35871191--35871815	208	3.0	208	89	1	984	39	7	17	35	1.77
35872922--35873005	26	3.2	26	88	6	116	51	9	13	26	1.71
35878320--35878482	57	2.9	56	82	6	202	49	6	11	32	1.65
35885818--35885854	7	5.3	7	100	0	74	0	40	29	29	1.57
35892431--35892508	27	3.1	27	62	27	71	53	10	3	32	1.52
35892407--35892508	48	2.1	48	96	1	188	55	9	4	29	1.53
35892881--35892921	17	2.2	19	83	12	50	70	2	7	19	1.22
35892956--35892990	13	2.8	13	86	4	54	74	0	22	2	0.95
35896243--35896279	11	3.2	11	85	14	56	24	8	2	64	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161