genome.fa.s22.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  107  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33940722--33941009	43	6.7	43	87	4	384	29	30	18	21	1.97
33941937--33942666	23	32.0	23	73	11	468	40	22	5	30	1.77
33941943--33942230	114	2.5	114	80	6	300	40	22	5	31	1.76
33941937--33942663	137	5.3	136	92	1	1123	40	22	5	30	1.77
33950453--33950755	123	2.5	123	84	4	380	33	23	20	22	1.97
33950453--33950761	41	7.5	41	81	1	332	33	24	20	21	1.97
33960741--33960837	42	2.3	42	83	0	122	20	20	36	22	1.96
33966829--33966863	15	2.3	15	90	9	54	37	14	11	37	1.82
33970021--33970171	40	3.8	40	87	2	196	27	28	20	23	1.99
33983473--33983541	34	2.0	35	88	2	104	39	18	11	30	1.87
33983621--33983749	27	4.8	26	77	8	98	31	10	18	39	1.84
34006985--34007067	40	2.1	40	95	0	148	34	15	16	32	1.91
34008225--34008326	51	2.0	51	100	0	204	27	13	35	23	1.93
34012803--34012926	66	1.9	66	84	3	169	29	22	21	25	1.99
34030112--34030349	84	2.8	84	92	2	406	21	16	26	36	1.94
34030075--34030389	41	7.5	40	80	7	270	21	16	26	35	1.95
34033916--34033947	16	2.0	16	93	0	55	40	6	9	43	1.62
34051893--34051940	20	2.4	19	73	10	51	70	8	4	16	1.27
34062844--34062899	20	2.8	20	78	7	53	21	3	3	71	1.17
34065340--34065752	27	15.3	27	83	7	412	17	19	17	44	1.87
34072848--34072923	26	2.9	26	86	0	98	34	18	26	21	1.96
34073096--34073564	27	17.4	26	77	7	361	19	18	17	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34073098--34073564	54	8.7	53	79	6	411	19	18	17	44	1.87
34073098--34073564	81	5.8	80	80	4	445	19	18	17	44	1.87
34083464--34083750	49	5.7	50	82	5	276	29	20	27	22	1.98
34083512--34083701	99	1.9	99	86	0	272	27	22	30	20	1.98
34083523--34083740	99	2.2	98	82	3	258	28	21	28	21	1.98
34085511--34085735	50	4.4	50	83	5	256	28	21	28	20	1.98
34090027--34090070	12	3.6	12	77	17	54	0	11	6	81	0.86
34090025--34090069	18	2.5	17	83	16	56	0	13	6	80	0.91
34112778--34112834	25	2.3	25	78	3	71	15	24	19	40	1.90
34112955--34113062	25	4.4	24	73	15	71	16	28	20	34	1.94
34112996--34113054	25	2.4	24	86	8	75	16	32	18	32	1.94
34113008--34113100	25	3.7	25	81	9	100	19	25	21	33	1.97
34117013--34117060	24	2.0	24	84	8	62	29	20	20	29	1.98
34137225--34137304	38	2.1	39	92	2	135	27	8	25	38	1.85
34137441--34137653	29	7.5	28	72	12	139	31	15	24	28	1.96
34137464--34137623	28	5.6	28	77	7	153	31	15	25	28	1.95
34137441--34137766	57	5.7	56	77	10	268	32	15	22	28	1.95
34137464--34137689	114	2.0	114	85	5	305	32	15	22	29	1.95
34147181--34147286	47	2.3	47	89	0	176	19	13	22	44	1.85
34161542--34161577	3	12.0	3	93	0	63	33	2	33	30	1.72
34161552--34161594	15	2.9	15	85	0	50	39	2	27	30	1.69
34163935--34163977	20	2.0	20	82	8	50	18	11	2	67	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34166548--34166602	16	3.4	16	76	0	65	34	5	30	29	1.80
34166589--34166678	44	2.0	46	89	4	139	32	6	24	36	1.81
34168715--34168739	13	1.9	13	100	0	50	32	8	28	32	1.86
34174071--34174132	32	1.9	32	90	0	97	35	19	9	35	1.85
34174440--34174470	12	2.6	12	94	0	53	58	9	9	22	1.59
34174754--34174894	27	5.3	25	72	17	92	25	22	13	38	1.91
34174774--34174894	51	2.3	55	83	12	155	28	23	12	35	1.91
34174774--34174894	28	4.6	26	79	10	129	28	23	12	35	1.91
34175995--34176024	6	5.0	6	91	0	51	50	36	0	13	1.42
34188477--34188521	19	2.4	19	96	0	81	35	26	15	22	1.94
34195363--34195396	17	2.0	17	88	0	50	23	17	5	52	1.66
34196395--34196525	66	2.0	66	92	0	217	20	22	26	30	1.98
34209430--34209457	3	9.3	3	100	0	56	67	0	32	0	0.91
34212451--34212507	15	3.9	15	86	4	71	33	17	0	49	1.47
34212451--34212504	14	3.7	14	85	7	72	33	16	0	50	1.46
34214435--34214536	50	2.0	50	88	7	154	40	9	17	32	1.83
34220264--34220300	17	2.1	17	95	5	65	37	21	16	24	1.93
34231417--34231645	84	2.6	85	83	6	282	22	13	24	39	1.90
34240405--34240571	27	6.2	27	80	6	196	19	17	21	41	1.90
34240403--34240571	54	3.1	53	88	5	223	20	17	21	41	1.90
34240417--34240571	81	1.9	81	89	5	242	18	18	20	43	1.89
34241855--34241929	37	2.0	37	89	0	114	30	9	22	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34245519--34245568	23	2.2	23	78	3	57	72	2	20	6	1.16
34256229--34256254	9	2.9	9	100	0	52	23	23	0	53	1.46
34256699--34256749	27	1.9	27	84	4	68	54	17	5	21	1.63
34258683--34258735	22	2.4	22	90	0	79	56	5	26	11	1.56
34263151--34263199	25	2.0	25	87	0	71	34	16	12	36	1.86
34272494--34272552	28	2.1	28	100	0	118	42	0	18	38	1.51
34273732--34273787	12	4.7	12	97	0	94	28	23	48	0	1.51
34275318--34275359	12	3.5	12	93	0	75	16	42	0	40	1.48
34275319--34275359	6	6.8	6	91	0	64	17	43	0	39	1.49
34276824--34276853	15	2.0	15	93	0	51	16	6	20	56	1.62
34280226--34280398	44	4.0	43	79	8	136	27	14	25	32	1.94
34280275--34280472	85	2.3	87	82	7	226	28	14	25	31	1.95
34280273--34280483	43	5.0	43	78	6	180	27	13	26	32	1.94
34281189--34281250	20	3.1	20	92	0	106	19	4	25	50	1.67
34286146--34286189	22	2.0	22	95	0	79	34	18	15	31	1.92
34287181--34287227	23	2.0	24	84	12	62	57	10	0	31	1.33
34288900--34289135	80	2.9	80	98	1	454	30	33	6	29	1.82
34293531--34293561	14	2.2	14	94	0	53	29	9	0	61	1.28
34296089--34296132	21	2.1	21	91	8	72	43	4	0	52	1.22
34298298--34298337	19	2.0	20	85	4	55	22	20	10	47	1.79
34302535--34303542	44	22.9	43	67	12	352	29	18	24	27	1.98
34302470--34303562	89	12.4	88	80	8	843	29	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34302530--34303020	45	11.0	45	69	6	293	30	18	24	26	1.97
34303232--34303542	45	7.0	44	78	2	343	31	15	23	29	1.95
34303577--34303825	132	1.9	132	81	5	306	28	20	23	26	1.99
34305074--34305117	21	2.1	21	91	8	72	43	4	0	52	1.22
34307441--34307491	25	2.0	25	100	0	102	45	15	3	35	1.65
34308161--34308224	31	2.1	29	85	5	83	34	4	10	50	1.59
34310723--34310774	25	2.1	25	92	0	86	30	19	7	42	1.79
34310669--34310797	69	1.9	69	90	0	204	27	11	11	49	1.73
34323231--34323279	19	2.6	19	80	0	71	55	28	4	12	1.55
34323449--34323473	13	1.9	13	100	0	50	60	24	8	8	1.52
34335600--34335631	8	4.0	8	100	0	64	50	12	25	12	1.75
34335798--34335907	55	2.0	55	98	0	211	46	9	19	25	1.79
34346297--34346340	17	2.7	16	82	6	61	72	2	0	25	0.96
34347052--34347106	27	2.0	27	92	0	92	32	16	27	23	1.96
34347419--34347472	18	2.9	19	83	8	58	33	1	3	61	1.25
34348113--34348166	16	3.2	16	72	10	54	74	3	0	22	0.98
34348497--34348546	19	2.8	19	76	11	52	40	0	0	60	0.97
34348675--34348704	11	2.7	11	94	0	51	60	0	23	16	1.36
34352680--34352737	15	3.7	15	81	6	71	31	0	1	67	1.01
34359686--34359719	16	2.2	15	89	5	50	44	0	0	55	0.99
34360458--34360511	25	2.1	26	83	10	67	31	3	3	61	1.31
34371156--34371191	18	2.0	18	100	0	72	33	5	22	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34374359--34374420	32	2.0	30	81	12	72	22	46	0	30	1.52
34374513--34374572	30	2.0	31	86	3	86	20	38	0	41	1.52
34375215--34375261	5	9.2	5	80	13	51	21	25	14	38	1.92
34377171--34377346	90	2.0	90	96	0	325	38	15	6	39	1.72
34381566--34381789	50	4.4	50	83	5	263	26	17	25	29	1.98
34382020--34382051	16	2.0	16	93	0	55	59	0	15	25	1.36
34384785--34384877	47	2.0	48	84	2	125	24	15	26	33	1.95
34385699--34386049	175	2.0	175	97	0	657	41	8	20	30	1.82
34387931--34388062	51	2.6	50	83	4	158	24	17	26	31	1.97
34387878--34388062	101	1.8	101	90	3	300	24	17	26	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161