genome.fa.s22.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  131  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41032562--41032609	3	16.0	3	100	0	96	33	0	0	66	0.92
41032812--41032849	4	9.5	4	100	0	76	26	0	23	50	1.50
41033801--41033911	40	2.8	40	82	4	136	36	22	20	19	1.95
41033963--41034206	41	6.0	41	88	0	346	19	22	27	30	1.98
41034642--41034674	14	2.3	15	94	5	59	30	0	33	36	1.58
41034893--41034952	14	4.3	14	79	8	59	25	0	43	31	1.55
41034893--41034944	7	7.4	7	84	0	59	23	0	44	32	1.54
41034893--41034951	21	2.8	21	81	0	64	25	0	42	32	1.55
41035430--41035454	13	1.9	13	100	0	50	56	4	8	32	1.47
41037738--41037785	25	1.9	25	95	0	87	43	2	10	43	1.50
41038410--41038563	77	2.0	77	97	0	290	25	18	16	38	1.92
41039557--41039647	43	2.1	43	87	2	130	35	10	9	43	1.73
41039922--41040125	42	4.8	43	83	5	247	22	18	31	28	1.97
41039917--41040125	86	2.5	82	85	8	260	22	17	30	29	1.97
41042561--41042602	12	3.5	12	76	23	52	45	0	0	54	0.99
41042559--41042604	24	1.9	24	100	0	92	43	0	0	56	0.99
41042559--41042604	14	3.6	14	75	22	55	43	0	0	56	0.99
41044719--41044755	17	2.1	18	90	5	58	72	2	0	24	0.97
41049265--41049487	120	1.9	120	82	7	283	34	24	17	23	1.96
41050453--41050755	157	1.9	155	86	3	428	32	13	16	37	1.88
41053008--41053042	10	3.2	11	88	12	54	17	37	0	45	1.48
41054235--41054259	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41055546--41055773	29	8.3	29	78	16	270	44	28	0	27	1.54
41055683--41055723	22	1.9	21	95	5	73	43	31	0	24	1.54
41055727--41055769	23	2.0	20	95	4	59	48	20	0	30	1.50
41055780--41056017	116	2.1	116	95	0	431	38	10	9	42	1.71
41055993--41056034	17	2.4	18	80	4	50	42	9	2	45	1.49
41059048--41059413	126	2.9	125	86	4	497	33	20	14	31	1.93
41062645--41063011	50	7.4	50	73	1	279	23	20	22	32	1.98
41062641--41063011	99	3.7	99	85	1	503	23	20	22	33	1.97
41063033--41063120	44	2.0	45	82	10	110	22	30	21	25	1.99
41063286--41063604	175	1.8	176	86	3	464	23	25	25	26	2.00
41063286--41063604	88	3.6	88	83	4	394	23	25	25	26	2.00
41063743--41063844	44	2.3	44	81	3	125	26	23	18	31	1.98
41066019--41066113	29	3.2	28	76	8	73	7	10	5	76	1.13
41066084--41066135	23	2.3	23	86	0	68	9	5	5	78	1.07
41066116--41066146	15	2.1	15	93	0	53	12	3	6	77	1.08
41066093--41066142	23	2.2	23	96	0	91	12	2	4	82	0.90
41079002--41079065	19	3.3	19	70	12	67	51	1	6	40	1.36
41078985--41079068	39	2.2	37	89	4	123	52	3	4	39	1.40
41079054--41079101	19	2.4	19	80	19	62	58	0	6	35	1.23
41079034--41079093	30	2.0	29	83	3	75	56	0	5	38	1.21
41079002--41079087	39	2.2	38	79	8	100	53	1	5	39	1.33
41081235--41081399	42	3.9	42	80	3	179	21	26	35	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41081088--41081357	146	1.8	146	81	1	335	24	25	31	18	1.98
41082428--41082475	25	1.9	25	86	0	69	6	25	14	54	1.63
41083077--41083125	23	2.1	24	81	7	57	67	2	0	30	1.02
41091265--41091470	36	5.7	36	72	4	146	33	18	23	24	1.97
41091217--41091471	72	3.5	72	81	2	269	32	20	22	23	1.98
41095243--41095600	46	8.3	45	81	13	423	34	14	22	28	1.94
41095311--41095465	36	4.0	36	79	15	184	36	14	20	28	1.92
41095265--41095600	82	4.0	82	86	8	471	33	15	22	28	1.94
41095243--41095600	128	2.8	126	77	16	412	34	14	22	28	1.94
41111784--41111832	25	1.9	26	88	12	75	16	14	10	59	1.61
41112935--41113318	44	8.8	44	72	13	222	29	20	23	27	1.99
41112632--41113313	217	3.1	217	92	0	1105	30	20	21	27	1.98
41119116--41119146	13	2.5	13	94	5	55	45	19	0	35	1.51
41131226--41131332	50	2.1	52	86	6	148	61	2	4	30	1.30
41131263--41131335	21	3.0	23	70	27	69	64	0	5	30	1.16
41131615--41131663	23	2.1	23	88	7	73	22	0	6	71	1.08
41133273--41133340	29	2.3	31	82	12	81	32	11	7	48	1.67
41137245--41137296	16	3.2	16	83	0	59	38	3	36	21	1.72
41137967--41138018	15	3.6	15	80	12	56	53	1	0	44	1.11
41138003--41138194	61	3.2	60	69	21	157	47	6	3	42	1.44
41137942--41138207	120	2.2	120	89	3	374	50	5	2	41	1.39
41138483--41138644	77	2.1	77	98	0	315	41	9	7	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41142286--41142325	20	2.0	21	85	14	57	35	42	10	12	1.76
41143552--41143594	16	2.6	17	82	10	54	37	6	2	53	1.41
41143598--41143634	16	2.2	18	85	9	51	32	0	5	62	1.18
41143703--41143763	26	2.3	26	91	0	95	31	4	3	60	1.34
41145126--41145205	28	2.7	29	76	5	81	31	18	11	38	1.86
41145691--41145804	59	1.9	60	83	7	151	45	14	18	21	1.84
41145690--41145816	59	2.1	59	78	4	139	48	13	17	20	1.80
41146197--41146241	20	2.3	19	84	3	54	73	2	22	2	1.05
41146214--41146272	21	2.8	21	71	2	55	69	8	20	1	1.23
41147102--41147236	40	3.4	39	74	7	130	25	18	25	31	1.98
41158902--41159280	125	3.0	125	86	2	537	30	15	22	31	1.95
41158910--41159276	126	2.9	125	87	1	529	30	15	22	31	1.94
41162303--41162527	116	1.9	116	88	3	337	42	9	9	38	1.71
41162529--41162587	23	2.6	23	83	0	73	28	0	23	47	1.52
41162555--41162797	29	8.3	29	74	15	198	28	0	25	46	1.56
41162619--41162708	24	3.5	23	72	22	81	26	0	26	46	1.53
41162619--41162708	25	3.5	25	77	13	85	26	0	26	46	1.53
41162533--41162791	87	3.0	87	84	6	289	28	0	23	47	1.55
41162783--41162809	6	4.5	6	100	0	54	14	0	48	37	1.45
41162794--41162940	42	3.4	42	86	12	224	22	0	31	46	1.52
41162710--41163087	55	7.1	55	83	8	417	25	0	26	46	1.57
41162815--41162960	41	3.4	41	78	15	150	23	0	29	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41162774--41162960	89	2.1	90	87	4	279	23	0	29	45	1.57
41162945--41163085	13	10.4	13	68	14	70	26	0	24	47	1.57
41163093--41163210	25	4.9	25	73	15	122	43	13	0	42	1.50
41163431--41163465	18	1.9	18	94	0	61	34	8	31	25	1.86
41164109--41164140	7	4.6	7	100	0	64	59	12	0	28	1.34
41165283--41165399	51	2.3	51	86	2	164	48	0	23	28	1.51
41165368--41165423	22	2.5	22	85	2	76	44	0	28	26	1.54
41165386--41165433	10	4.5	10	77	12	51	47	0	31	20	1.50
41165283--41165417	51	2.6	51	82	11	161	48	0	23	28	1.51
41166139--41166209	37	1.9	37	85	0	97	46	2	2	47	1.31
41166339--41166386	23	2.1	22	84	3	60	29	18	4	47	1.67
41178052--41178083	15	2.1	16	94	5	57	37	0	0	62	0.95
41178053--41178095	18	2.5	17	78	17	52	39	0	0	60	0.97
41180179--41180251	33	2.2	34	82	2	85	21	5	26	46	1.73
41183257--41183308	22	2.4	22	96	0	95	30	21	28	19	1.97
41187531--41187607	11	6.9	11	70	24	63	42	1	29	25	1.63
41187531--41187607	33	2.3	33	80	10	93	42	1	29	25	1.63
41187531--41187607	22	3.5	22	80	16	88	42	1	29	25	1.63
41198511--41198546	18	2.1	18	89	5	56	47	0	8	44	1.33
41198494--41198571	38	2.1	37	81	13	88	48	1	3	46	1.28
41199504--41199548	23	2.0	23	86	0	63	68	0	0	31	0.89
41201011--41201052	22	1.9	22	85	0	57	38	7	4	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41201089--41201119	12	2.7	11	90	9	53	35	0	0	64	0.94
41204366--41204418	27	1.9	27	84	3	70	62	1	1	33	1.17
41207466--41207505	3	13.3	3	100	0	80	0	32	0	67	0.91
41207884--41207947	29	2.2	29	82	0	83	48	10	9	31	1.70
41208452--41208497	6	7.7	6	100	0	92	47	34	17	0	1.48
41214364--41214406	21	2.0	21	100	0	86	44	9	23	23	1.82
41217334--41217364	13	2.3	13	94	5	53	0	22	0	77	0.77
41221407--41221540	41	3.4	39	74	13	114	33	24	15	26	1.95
41221644--41222095	225	2.0	225	100	0	904	45	18	3	31	1.68
41222261--41222298	20	1.9	20	88	0	58	31	15	0	52	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161