genome.fa.s22.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  101  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31985142--31985263	58	2.1	58	90	0	190	27	23	10	38	1.88
31985142--31985263	29	4.2	29	90	0	172	27	23	10	38	1.88
31987575--31987667	29	3.2	30	87	4	145	21	27	11	38	1.89
31987652--31987834	29	6.3	30	76	6	148	23	25	12	38	1.90
31987620--31987807	87	2.2	85	84	2	232	23	25	12	38	1.89
31987620--31987833	86	2.5	87	80	5	202	23	25	12	38	1.90
31998579--31998611	17	2.0	17	88	5	50	33	0	15	51	1.43
32007596--32007650	26	2.1	26	100	0	110	38	14	18	29	1.90
32007840--32007983	27	5.3	26	80	6	117	18	20	20	40	1.92
32007842--32007975	54	2.5	54	83	0	178	17	20	22	39	1.92
32009962--32010008	19	2.4	18	83	13	58	72	6	4	17	1.22
32009962--32010013	20	2.6	19	85	11	61	71	7	3	17	1.25
32030222--32030301	40	2.0	40	87	0	115	36	16	28	18	1.93
32032187--32032276	28	3.2	28	90	1	137	31	24	21	23	1.98
32032377--32032427	26	2.0	26	92	0	84	43	23	17	15	1.88
32032600--32032821	27	8.2	27	82	5	236	22	15	17	44	1.86
32032628--32032826	107	1.9	107	85	4	276	23	15	16	44	1.86
32032832--32032931	27	3.7	27	84	0	128	18	17	21	44	1.87
32039082--32039108	12	2.2	12	100	0	54	7	22	40	29	1.81
32039242--32039304	29	2.2	29	85	0	90	33	23	11	31	1.90
32040718--32040753	12	3.0	12	87	0	54	58	0	2	38	1.13
32041513--32041552	20	2.0	20	85	9	55	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32046555--32046590	12	3.0	12	87	0	54	58	0	2	38	1.13
32051220--32051418	30	6.7	30	74	8	138	23	26	13	36	1.91
32051212--32051409	90	2.2	88	83	3	243	23	26	13	36	1.92
32053324--32053361	18	2.1	19	85	5	51	44	18	0	36	1.50
32062528--32062650	41	3.0	41	80	8	133	31	26	21	21	1.98
32062540--32062650	42	2.7	41	83	5	134	32	27	20	19	1.97
32066951--32067044	49	1.9	49	93	0	161	27	25	3	43	1.70
32067500--32067528	13	2.2	13	100	0	58	6	27	31	34	1.83
32069561--32069618	8	6.9	8	78	9	53	3	18	0	77	0.91
32069569--32069617	4	11.8	4	82	8	62	4	18	0	77	0.92
32072806--32073110	27	11.4	25	75	16	158	19	15	20	44	1.86
32072802--32073094	54	5.5	53	78	8	265	18	15	21	44	1.86
32072872--32073102	53	4.3	53	80	4	207	18	14	22	45	1.85
32076120--32076329	27	7.8	27	84	4	237	20	16	20	42	1.89
32076122--32076329	81	2.6	81	86	0	274	20	16	20	42	1.89
32079708--32079736	10	2.9	10	100	0	58	31	37	10	20	1.86
32080592--32080635	17	2.6	17	81	0	61	15	34	27	22	1.95
32082239--32082314	30	2.6	29	89	4	118	30	25	25	19	1.98
32083667--32084023	27	13.3	27	79	5	357	41	17	14	26	1.88
32084131--32084183	26	2.0	26	88	0	79	15	18	24	41	1.89
32084141--32084191	26	2.0	26	88	0	75	19	17	21	41	1.91
32086214--32086298	35	2.5	35	82	5	93	27	8	20	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32086252--32086322	34	2.1	35	84	7	92	22	12	21	43	1.86
32086312--32086440	69	1.9	69	83	3	170	25	17	17	39	1.91
32091306--32091331	6	4.3	6	100	0	52	50	0	34	15	1.45
32092969--32093100	40	3.3	40	81	5	149	25	15	27	31	1.96
32092984--32093120	41	3.4	41	83	6	163	26	16	26	31	1.96
32093803--32093869	34	1.9	35	82	8	84	16	11	25	46	1.81
32103058--32103148	24	3.8	24	77	11	96	28	18	25	27	1.98
32104226--32104276	15	3.4	15	75	20	61	23	23	35	17	1.95
32104231--32104281	13	3.6	13	76	19	57	21	25	35	17	1.95
32104221--32104287	30	2.2	30	100	0	134	17	22	37	22	1.94
32105674--32105728	20	2.8	20	74	0	65	40	20	25	14	1.90
32105897--32105930	17	2.1	16	88	5	50	52	5	0	41	1.25
32116105--32116163	26	2.3	26	90	0	91	44	16	15	23	1.86
32116334--32116392	27	2.2	27	87	0	82	23	16	23	35	1.95
32116343--32116619	27	10.3	27	79	7	190	19	19	21	38	1.93
32116344--32116619	54	5.1	54	78	3	227	19	19	21	39	1.93
32116345--32116619	81	3.4	81	82	4	261	19	20	21	39	1.93
32118297--32118399	26	4.0	26	78	5	102	38	20	20	20	1.93
32118300--32118399	52	1.9	52	84	8	132	40	20	20	20	1.92
32118547--32118663	54	2.2	54	90	3	182	21	18	18	41	1.91
32118538--32118651	27	4.2	27	85	0	156	22	19	20	37	1.94
32120252--32120312	28	2.2	28	94	2	106	27	24	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32120673--32120950	27	10.3	27	85	1	335	18	20	21	39	1.92
32123095--32123336	50	4.8	50	92	1	378	20	30	22	26	1.98
32123807--32124250	222	2.0	222	100	0	888	36	18	11	34	1.87
32130380--32130419	21	1.9	21	89	0	62	70	10	5	15	1.32
32144762--32144820	24	2.6	23	86	7	77	55	1	6	35	1.36
32147676--32147734	23	2.5	25	75	10	70	52	8	6	32	1.58
32149514--32149844	44	7.6	45	72	9	148	27	25	19	27	1.99
32149477--32149884	217	1.9	217	85	4	520	27	24	19	28	1.98
32149519--32149943	173	2.5	173	85	3	536	27	24	18	28	1.98
32149939--32150366	128	3.3	128	91	1	707	24	23	19	32	1.98
32151482--32151693	41	5.2	41	88	0	298	19	21	26	31	1.98
32155715--32155770	28	2.0	27	96	3	103	26	10	25	37	1.88
32156330--32156517	43	4.4	43	91	0	277	27	30	18	23	1.98
32158952--32158977	9	2.9	9	100	0	52	23	30	11	34	1.90
32160210--32160483	41	6.7	41	89	4	376	31	29	21	17	1.96
32160540--32160656	40	2.9	41	78	3	123	24	21	18	35	1.96
32160865--32160924	18	3.4	18	64	13	52	43	6	10	40	1.64
32161651--32161684	7	5.0	7	92	7	61	14	14	0	70	1.17
32162570--32162598	14	2.0	15	93	6	51	0	20	0	79	0.74
32175354--32175445	25	3.7	25	78	11	91	29	23	22	23	1.99
32178995--32179033	20	2.0	20	84	0	51	17	2	23	56	1.53
32180133--32180170	19	2.0	19	89	0	58	63	13	2	21	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32180356--32180398	22	2.0	22	90	0	68	32	18	16	32	1.93
32185013--32185054	11	4.0	11	84	6	52	35	0	0	64	0.94
32192132--32192779	27	24.1	27	85	2	709	36	20	20	22	1.95
32192850--32192901	24	2.2	24	89	6	79	19	7	25	48	1.75
32193027--32193082	26	2.2	26	83	0	67	14	21	30	33	1.93
32193073--32193304	32	7.3	32	78	5	195	21	18	21	38	1.93
32193070--32193293	64	3.5	64	83	6	283	20	19	21	38	1.94
32194367--32194533	43	3.9	41	73	12	122	29	28	17	23	1.97
32194757--32194960	102	2.0	102	99	0	399	30	24	12	32	1.92
32210807--32210969	39	4.1	39	79	11	147	25	22	27	23	2.00
32210807--32210950	39	3.6	41	81	13	160	25	22	27	24	2.00
32210807--32210956	79	1.9	79	81	8	180	26	22	28	23	1.99
32215809--32215859	25	2.1	24	85	3	66	11	9	0	78	0.97
32226236--32226352	56	2.2	54	82	8	134	26	19	29	24	1.99
32228415--32228533	27	4.6	27	82	8	138	26	14	27	31	1.95
32228464--32228544	27	3.0	27	85	0	63	27	14	27	30	1.95
32248758--32249223	225	2.1	224	93	2	792	42	18	13	26	1.86
32249445--32249506	20	3.1	20	73	17	65	32	20	38	8	1.82
32249436--32249593	40	4.0	40	70	12	110	32	17	31	17	1.94
32255622--32255758	46	2.9	45	78	6	139	26	10	29	32	1.90
32257238--32257275	18	2.1	18	95	0	67	34	5	26	34	1.79
32261151--32261279	53	2.6	50	82	7	129	27	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32261619--32261691	20	3.7	20	75	0	83	36	17	20	24	1.94
32261618--32261694	40	1.9	40	89	0	118	37	18	19	24	1.94
32269228--32269258	15	2.1	15	93	0	53	19	0	3	77	0.90
32273723--32273907	50	3.7	49	76	7	185	24	18	27	29	1.98
32273726--32273907	101	1.8	101	89	4	287	24	18	26	29	1.98
32273913--32274011	46	2.2	43	79	12	101	25	18	24	32	1.97
32275698--32275882	50	3.7	49	76	7	185	24	18	27	29	1.98
32275701--32275882	101	1.8	101	89	4	287	24	18	26	29	1.98
32275888--32275986	46	2.2	43	79	12	101	25	18	24	32	1.97
32278052--32278107	22	2.6	23	88	5	64	37	8	7	46	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161