genome.fa.s22.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  75  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23469059--23469478	44	9.5	43	77	5	387	27	16	26	29	1.97
23469059--23469477	88	4.8	90	78	5	435	27	16	26	28	1.97
23469063--23469465	132	3.1	132	98	0	770	28	16	26	28	1.97
23469512--23469711	44	4.5	44	81	3	242	25	19	27	27	1.99
23469459--23469781	132	2.4	132	71	13	311	26	22	26	25	2.00
23470560--23470602	20	2.1	21	95	4	79	37	9	13	39	1.78
23470559--23470613	20	2.8	19	81	5	74	36	9	16	38	1.80
23470602--23470646	23	2.0	23	82	4	56	31	6	17	44	1.75
23472675--23472754	42	1.9	42	87	5	117	45	21	13	20	1.85
23474253--23474281	14	2.0	15	93	6	51	27	6	20	44	1.77
23475428--23475551	43	2.9	43	81	11	146	20	20	28	30	1.98
23483834--23483928	45	2.1	45	88	0	145	27	21	23	28	1.99
23486562--23486617	29	1.9	29	85	0	76	39	17	16	26	1.91
23487134--23487617	104	4.6	105	89	5	664	25	0	13	59	1.40
23489670--23489715	6	7.7	6	100	0	92	32	32	34	0	1.58
23490183--23490291	48	2.3	48	87	3	148	46	7	10	35	1.65
23493969--23494027	23	2.6	24	73	10	61	3	32	0	64	1.10
23497175--23497242	32	2.1	33	83	8	86	14	14	22	48	1.80
23499444--23499477	16	2.1	16	88	0	50	64	5	23	5	1.38
23501303--23501388	43	2.0	43	97	0	163	18	22	25	33	1.96
23505268--23505313	12	3.8	12	88	2	56	80	4	10	4	0.99
23505268--23505313	18	2.5	19	85	7	76	80	4	10	4	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23505274--23505308	6	5.8	6	100	0	70	85	0	14	0	0.59
23505287--23505372	31	2.7	30	77	21	95	73	5	11	9	1.25
23507761--23507952	44	4.3	45	72	12	130	31	22	21	24	1.98
23507761--23507926	88	1.9	88	82	2	208	31	22	22	23	1.99
23507938--23508467	100	5.3	100	89	0	756	33	24	19	23	1.97
23508016--23508467	50	9.0	50	69	4	275	33	23	19	23	1.97
23508481--23508609	50	2.6	50	81	3	125	31	21	17	29	1.96
23509202--23509235	16	2.1	16	94	0	59	64	2	26	5	1.30
23514588--23514624	19	2.0	19	89	5	58	48	2	0	48	1.15
23524252--23524406	33	4.6	33	69	24	108	35	29	16	18	1.93
23524207--23524475	102	2.6	102	93	0	457	34	28	16	20	1.94
23524528--23524672	51	2.8	51	83	8	204	31	28	17	22	1.96
23526908--23526932	8	3.1	8	100	0	50	76	0	0	24	0.80
23527074--23527195	60	2.0	60	98	0	235	32	22	9	36	1.85
23531403--23531626	40	5.6	40	91	1	308	24	20	28	26	1.99
23531364--23531626	80	3.3	80	85	3	318	23	20	28	26	1.99
23531364--23531626	120	2.2	120	82	4	318	23	20	28	26	1.99
23539536--23539602	31	2.2	31	83	0	80	23	17	29	28	1.97
23539543--23539608	31	2.1	31	85	0	87	22	15	33	28	1.94
23544855--23545023	85	2.0	85	94	2	295	20	24	20	34	1.96
23548224--23548262	16	2.2	17	86	13	53	69	0	17	12	1.19
23551823--23551848	4	6.5	4	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23552248--23552298	23	2.2	23	89	0	75	27	7	21	43	1.80
23568155--23568196	7	6.1	7	97	2	77	0	26	0	73	0.83
23568401--23568434	15	2.4	14	90	5	50	0	29	0	70	0.87
23575360--23575398	20	2.0	20	100	0	78	20	5	30	43	1.73
23587182--23587244	31	2.0	31	84	6	83	46	6	7	39	1.59
23591897--23592012	41	2.9	41	89	3	173	24	20	25	30	1.99
23602207--23602262	20	2.8	20	84	15	71	1	23	0	75	0.90
23602807--23602931	63	2.0	63	87	0	178	32	21	21	24	1.98
23604568--23604650	43	1.9	43	92	4	141	33	7	16	42	1.76
23616512--23616567	20	2.8	20	84	15	71	1	23	0	75	0.90
23617112--23617236	63	2.0	63	87	0	178	32	21	21	24	1.98
23618873--23618955	43	1.9	43	92	4	141	33	7	16	42	1.76
23628514--23628571	29	2.0	29	86	6	82	12	22	0	65	1.25
23628532--23628570	18	2.2	17	86	13	53	10	20	0	69	1.17
23628558--23628589	16	1.9	17	93	6	57	25	18	0	56	1.42
23628628--23628673	6	7.7	6	85	0	65	4	17	2	76	1.06
23628619--23628673	18	3.1	18	86	0	74	5	18	3	72	1.18
23640153--23640230	39	2.0	39	82	9	97	26	10	12	50	1.73
23646562--23646782	40	5.5	40	89	5	315	27	27	22	23	1.99
23654613--23654700	40	2.2	40	89	4	133	20	29	23	26	1.99
23654574--23654753	40	4.5	40	75	10	120	23	27	22	26	1.99
23660139--23660309	29	5.9	29	75	8	143	22	26	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23660142--23660271	59	2.2	59	86	2	172	22	26	10	40	1.85
23660135--23660340	84	2.4	84	86	4	259	23	25	12	38	1.90
23665507--23665782	139	2.0	137	80	5	315	33	25	18	22	1.97
23667012--23667085	37	2.0	37	94	0	130	47	4	24	24	1.69
23671142--23671181	18	2.2	19	90	4	64	42	7	0	50	1.30
23670647--23671524	248	3.6	243	76	13	770	45	6	9	38	1.62
23670830--23671532	234	2.9	231	80	11	696	46	6	8	38	1.60
23672738--23672841	51	2.0	53	85	10	144	25	23	1	50	1.60
23672788--23672828	11	3.6	12	80	12	50	21	21	2	53	1.57
23674044--23674360	126	2.5	125	91	2	512	29	21	17	31	1.96
23674715--23674751	5	7.4	5	93	0	56	43	0	13	43	1.44
23675785--23675840	29	1.9	29	88	0	85	51	10	1	35	1.47
23679919--23679975	30	1.9	30	92	0	96	45	12	7	35	1.69
23686200--23686275	29	2.6	29	87	4	100	31	15	13	39	1.86
23690575--23690694	41	3.0	41	78	10	113	27	25	19	27	1.99
23691120--23691262	76	1.9	77	85	2	198	40	17	3	38	1.67
23694411--23694729	163	2.0	163	96	0	584	30	12	26	30	1.93
23696565--23696742	27	6.6	27	83	3	205	26	15	28	29	1.96
23696566--23696721	82	1.9	81	88	3	233	26	15	28	29	1.96
23696562--23696742	82	2.2	81	83	2	229	27	15	27	29	1.96
23696647--23696753	27	3.9	27	85	1	70	26	14	28	30	1.95
23702444--23702476	17	1.9	17	100	0	66	45	18	12	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23705514--23705543	6	5.2	6	92	8	53	0	13	0	86	0.57
23705514--23705543	11	2.6	12	89	10	53	0	13	0	86	0.57
23707595--23707703	53	2.0	55	89	5	168	33	11	14	39	1.83
23710397--23710461	33	2.0	32	90	3	103	18	24	16	40	1.91
23710439--23710487	25	1.9	25	83	4	62	26	28	10	34	1.89
23721412--23721596	79	2.3	81	84	7	236	24	22	27	25	2.00
23721413--23721596	40	4.6	40	83	9	216	24	22	27	25	2.00
23721465--23721629	79	2.1	79	84	6	210	26	21	27	25	1.99
23731225--23731249	12	2.1	12	100	0	50	92	8	0	0	0.40
23731227--23731257	13	2.4	13	94	0	53	93	3	3	0	0.41
23741290--23741413	50	2.5	50	80	5	135	26	24	28	20	1.99
23742560--23742985	213	2.0	213	99	0	834	30	22	17	29	1.96
23742908--23743187	139	2.0	139	100	0	560	31	21	14	32	1.93
23747916--23747961	22	2.1	22	100	0	92	21	17	13	47	1.81
23750518--23750643	20	6.3	19	72	9	99	15	30	18	34	1.92
23750495--23750592	40	2.5	40	89	3	144	18	30	16	34	1.93
23750518--23750643	40	3.2	40	83	0	153	15	30	18	34	1.92
23753296--23753448	77	2.0	77	94	2	274	38	12	11	37	1.79
23755557--23755581	13	1.9	13	100	0	50	48	0	20	32	1.50
23755952--23756283	50	6.6	50	86	1	459	26	21	30	21	1.98
23756047--23756322	50	5.6	48	82	6	150	29	21	27	22	1.99
23757995--23758062	30	2.2	31	84	2	84	51	4	17	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23765209--23765464	130	2.0	130	88	1	379	35	26	10	27	1.89
23767566--23767608	21	2.1	20	83	12	52	37	0	2	60	1.10
23768725--23768769	18	2.5	18	85	7	56	33	2	6	57	1.37
23770687--23770871	79	2.3	82	83	7	229	24	27	22	24	2.00
23770668--23770871	40	5.1	40	81	8	229	24	27	22	25	2.00
23780290--23780384	49	1.9	49	95	0	172	41	13	10	34	1.79
23794745--23794971	42	5.4	42	79	7	228	35	25	16	22	1.95
23794745--23794974	85	2.7	85	91	0	345	34	25	16	23	1.95
23794948--23794998	26	2.0	26	84	0	66	23	29	25	21	1.99
23798173--23798262	38	2.4	38	94	1	155	38	12	18	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161