genome.fa.s22.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  97  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30708845--30709309	50	9.3	50	70	2	288	22	19	24	33	1.97
30708830--30709334	100	5.1	100	89	0	643	23	20	24	32	1.98
30710712--30710762	7	7.0	7	79	18	52	13	15	0	70	1.17
30710712--30710754	22	1.9	23	90	4	70	13	13	0	72	1.13
30710712--30710764	23	2.3	22	83	6	61	13	15	0	71	1.14
30710731--30710757	13	2.1	13	100	0	54	14	14	0	70	1.17
30711135--30711219	6	13.8	6	74	18	50	10	5	5	77	1.11
30711129--30711167	18	2.2	18	90	9	62	12	5	2	79	1.00
30711141--30711222	32	2.6	31	75	12	87	9	6	6	78	1.10
30720219--30720250	14	2.3	14	94	0	55	25	15	46	12	1.81
30730385--30730506	44	2.8	44	78	9	115	32	16	21	29	1.95
30731422--30731923	44	10.7	44	67	18	228	33	18	20	27	1.96
30731455--30731919	98	4.9	95	69	18	263	33	18	19	27	1.96
30731422--30731988	142	4.0	142	93	0	945	33	18	20	27	1.96
30739128--30739163	19	1.9	19	88	5	56	30	2	0	66	1.06
30739842--30739898	22	2.5	24	80	8	66	64	1	3	29	1.20
30746692--30746730	13	3.0	13	76	0	51	61	2	2	33	1.23
30749044--30749068	12	2.1	12	100	0	50	24	0	0	76	0.80
30749730--30749769	20	2.0	20	90	0	62	27	10	12	50	1.72
30749715--30749781	34	1.9	35	87	3	100	32	8	11	46	1.72
30751176--30751235	29	2.1	28	84	3	75	25	11	6	56	1.59
30753153--30753207	23	2.3	24	84	9	69	25	1	1	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30754811--30754864	25	2.2	25	93	0	90	27	24	20	27	1.99
30758078--30758120	21	2.0	21	100	0	86	37	18	4	39	1.72
30763428--30763503	37	2.1	37	100	0	152	42	15	21	21	1.89
30767631--30767682	18	3.0	17	75	11	52	30	5	3	59	1.39
30769043--30769102	26	2.4	26	81	8	72	58	1	0	40	1.08
30776614--30776700	45	1.9	45	95	0	156	42	8	16	33	1.77
30780021--30780072	27	1.9	27	88	0	77	40	13	23	23	1.89
30782668--30782772	31	3.4	31	67	17	90	41	14	11	32	1.81
30782651--30782778	63	2.0	63	92	0	211	42	14	9	32	1.78
30782956--30783035	41	2.0	41	89	0	124	33	22	17	26	1.96
30783117--30783257	75	1.9	75	82	5	178	43	16	4	34	1.69
30784716--30784787	26	2.8	26	85	2	83	30	15	8	45	1.75
30784934--30784964	6	5.2	6	92	0	53	16	19	0	64	1.29
30786833--30787624	95	8.4	95	84	3	927	37	12	19	30	1.89
30791030--30791057	3	9.3	3	100	0	56	0	32	0	67	0.91
30798444--30798509	25	2.6	25	77	13	73	22	22	24	30	1.99
30798505--30798555	24	2.1	25	81	3	59	25	17	27	29	1.98
30801603--30803023	715	2.0	704	87	3	2055	29	14	22	33	1.94
30805779--30805839	29	2.1	29	84	0	77	39	24	14	21	1.91
30813191--30813283	40	2.3	40	84	1	114	34	19	21	24	1.96
30813206--30813315	40	2.8	40	83	5	136	40	18	18	23	1.91
30813382--30813664	41	6.9	41	90	0	377	22	19	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30816025--30816084	30	2.0	30	96	0	111	35	13	25	26	1.93
30816526--30816586	31	2.0	31	96	0	113	45	8	14	31	1.74
30819063--30819233	86	2.0	85	95	1	306	29	14	18	38	1.90
30819968--30820071	52	2.0	52	100	0	208	38	5	3	51	1.44
30820199--30820524	43	7.6	43	81	3	309	21	15	30	32	1.95
30822371--30822416	22	2.0	22	83	8	56	28	13	26	32	1.93
30826006--30826657	44	14.9	45	73	6	469	30	24	15	29	1.96
30825922--30826533	88	6.9	89	89	3	779	30	24	15	30	1.95
30825980--30826533	177	3.1	177	90	1	808	31	24	15	29	1.95
30826034--30826531	265	1.9	266	92	0	836	31	24	15	29	1.95
30825908--30826701	133	6.1	129	78	5	606	30	23	15	30	1.96
30826138--30826701	126	4.4	126	82	4	614	31	24	15	28	1.96
30827605--30827653	26	1.9	26	88	12	75	61	8	14	16	1.56
30836168--30836390	39	5.7	40	85	8	266	25	22	27	24	2.00
30836168--30836390	79	2.8	81	84	9	282	25	22	27	24	2.00
30836168--30836423	79	3.3	79	81	10	217	26	21	27	24	1.99
30844155--30844340	40	4.7	40	87	5	243	24	22	27	25	1.99
30844208--30844373	80	2.1	79	85	5	219	25	20	27	25	1.99
30851633--30851661	15	1.9	15	100	0	58	62	13	3	20	1.46
30851671--30851714	18	2.5	17	85	10	54	70	4	0	25	1.06
30852184--30852259	29	2.8	27	82	13	77	59	3	2	34	1.30
30852201--30852259	26	2.2	26	82	14	66	57	5	1	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30855757--30855815	24	2.5	24	82	0	64	23	16	16	42	1.89
30855944--30855976	13	2.7	13	90	9	52	36	12	15	36	1.84
30857182--30857425	51	4.8	51	78	7	264	29	15	27	28	1.96
30857178--30857425	102	2.4	102	95	0	435	29	15	27	28	1.96
30864046--30864093	19	2.6	19	76	3	53	39	0	2	58	1.10
30864372--30864400	11	2.6	11	100	0	58	58	10	24	6	1.55
30870017--30870509	246	2.0	246	100	0	986	33	16	22	27	1.95
30882591--30882719	44	2.9	44	80	2	123	41	12	22	23	1.87
30887416--30887523	45	2.4	44	83	7	121	40	14	24	20	1.90
30892893--30892967	19	3.8	19	87	6	114	38	9	14	37	1.79
30892894--30892956	21	3.1	21	93	4	103	39	9	12	38	1.76
30892906--30892990	21	4.0	22	78	17	81	38	7	15	38	1.74
30892956--30893000	23	2.0	23	86	4	65	33	4	15	46	1.66
30899127--30899169	21	2.0	21	95	0	77	27	0	37	34	1.57
30899150--30899182	16	2.1	16	94	0	57	33	0	36	30	1.58
30899161--30899255	45	2.1	44	88	1	136	34	5	27	32	1.79
30899417--30899451	18	2.0	17	88	5	52	54	0	0	45	0.99
30899375--30899447	27	2.7	27	76	8	76	52	2	0	45	1.15
30899336--30899607	144	1.9	147	94	3	487	46	3	2	47	1.34
30899561--30899595	18	2.0	17	88	5	52	54	0	0	45	0.99
30904143--30904196	3	18.0	3	100	0	108	0	33	0	66	0.92
30905743--30905955	108	2.0	105	94	4	374	53	7	7	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30906979--30907068	35	2.6	35	98	0	171	35	36	4	23	1.75
30907918--30908034	40	2.8	43	85	6	159	21	20	23	34	1.97
30926051--30926130	25	3.2	26	75	7	76	33	21	15	30	1.94
30929611--30929791	90	2.0	90	97	0	344	30	12	23	33	1.91
30929822--30930076	69	3.7	68	86	3	375	30	10	14	43	1.79
30931278--30931310	16	2.1	16	94	5	59	21	24	3	51	1.62
30934372--30934556	79	2.3	82	84	7	238	25	27	22	24	2.00
30934353--30934556	40	5.1	40	82	8	238	25	27	22	25	2.00
30939412--30939535	63	2.0	64	91	4	207	47	5	17	29	1.70
30941527--30941562	18	2.1	18	89	5	56	36	2	0	61	1.11
30942118--30942172	24	2.2	25	81	15	69	38	3	14	43	1.63
30945043--30945077	12	2.8	12	91	4	52	31	8	0	60	1.27
30948781--30948827	19	2.5	19	86	6	60	25	19	10	44	1.82
30956833--30956956	44	2.8	44	85	1	149	29	21	22	26	1.99
30956880--30957187	92	3.4	94	81	9	316	34	17	17	30	1.94
30957071--30957278	46	4.6	44	73	10	138	32	19	20	28	1.97
30959116--30959158	19	2.5	16	88	11	59	51	0	0	48	1.00
30960097--30960372	125	2.2	125	92	0	462	32	19	19	29	1.96
30960669--30960789	49	2.5	49	94	0	206	44	8	3	43	1.50
30961210--30961252	18	2.4	18	88	0	59	44	9	27	18	1.80
30964125--30964160	17	2.1	17	89	0	54	47	2	0	50	1.15
30964542--30964641	53	1.9	53	83	6	132	51	6	5	38	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30966400--30966441	21	2.0	21	100	0	84	28	9	4	57	1.51
30966489--30966539	16	3.1	16	82	2	66	49	3	23	23	1.67
30966717--30966768	18	3.0	17	88	5	61	53	0	0	46	1.00
30966916--30966950	13	2.8	12	83	8	52	57	0	11	31	1.34
30972640--30972694	22	2.6	22	80	5	60	34	27	0	38	1.57
30972747--30972800	13	4.0	13	76	7	54	35	0	1	62	1.06
30977142--30977276	68	2.0	69	88	4	202	48	5	4	41	1.48
30984552--30984648	48	2.0	48	91	0	158	46	20	14	18	1.84
30985805--30985854	13	3.8	13	72	0	55	38	28	4	30	1.75
30985806--30985855	26	1.9	26	87	0	73	36	28	6	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161