genome.fa.s22.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  150  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46692480--46692527	14	3.6	14	72	11	55	29	16	0	54	1.43
46694449--46694541	40	2.5	37	82	7	107	31	25	18	24	1.98
46695164--46695205	21	2.0	21	86	4	59	40	14	28	16	1.88
46696530--46696558	2	15.0	2	92	7	51	51	0	0	48	1.00
46701098--46701183	44	2.0	44	83	4	111	25	24	19	30	1.98
46701039--46701525	132	3.7	132	92	0	735	27	23	20	28	1.99
46703815--46703855	20	2.0	20	90	9	66	65	4	14	14	1.42
46707378--46707408	6	5.2	6	100	0	62	32	0	16	51	1.44
46713353--46713377	13	1.9	13	100	0	50	68	0	0	32	0.90
46714209--46714262	28	1.9	28	84	0	72	64	9	7	18	1.45
46718029--46718062	2	17.0	2	87	0	50	50	0	0	50	1.00
46732320--46732358	19	2.1	19	100	0	78	25	10	15	48	1.76
46739363--46739387	13	1.9	13	100	0	50	40	0	20	40	1.52
46768721--46768937	27	8.1	27	85	3	287	41	19	16	23	1.90
46768721--46768937	53	4.1	54	87	3	298	41	19	16	23	1.90
46769290--46769343	28	1.9	28	88	0	81	20	24	25	29	1.99
46778074--46778104	8	3.8	8	95	4	53	35	0	16	48	1.46
46789713--46789738	7	3.7	7	100	0	52	23	0	0	76	0.78
46795745--46795790	20	2.2	22	80	11	60	41	8	6	43	1.61
46802525--46802721	91	2.1	90	84	9	245	33	18	11	36	1.87
46802820--46802956	10	14.3	10	65	18	60	64	2	2	30	1.17
46802866--46802956	20	4.5	19	71	15	67	64	2	3	29	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46802821--46802947	9	13.6	9	68	17	71	64	2	2	30	1.19
46802820--46802938	20	6.3	19	73	13	86	64	1	2	31	1.16
46802835--46802946	19	5.8	19	73	14	86	62	2	2	32	1.23
46803178--46803247	28	2.4	29	83	9	90	31	5	2	60	1.35
46803207--46803275	19	3.7	19	78	5	79	24	4	4	66	1.28
46803207--46803284	19	4.2	19	76	12	63	24	5	3	66	1.29
46803267--46803336	29	2.5	28	81	4	77	34	1	1	62	1.13
46803267--46803361	28	3.4	28	78	8	88	31	2	1	65	1.11
46803430--46803676	88	2.7	88	87	6	327	32	9	21	35	1.86
46807185--46807226	3	14.0	3	100	0	84	33	0	0	66	0.92
46807660--46807695	4	9.0	4	100	0	72	25	0	0	75	0.81
46809399--46809463	3	21.7	3	93	0	103	35	3	0	61	1.12
46811421--46811510	30	3.0	29	76	15	78	37	0	40	22	1.54
46811421--46811510	29	3.0	30	75	15	80	37	0	40	22	1.54
46814055--46814103	23	2.2	21	82	10	53	18	30	10	40	1.84
46815633--46815702	11	6.6	11	73	20	60	61	1	2	34	1.20
46815623--46815706	40	2.2	39	93	4	143	65	1	2	30	1.13
46828719--46828744	12	2.2	12	100	0	52	34	7	15	42	1.75
46828731--46828778	19	2.4	20	93	6	80	37	10	14	37	1.81
46828736--46828804	22	3.2	21	82	13	70	39	7	15	37	1.76
46828757--46828814	22	2.7	23	78	7	59	37	5	15	41	1.70
46834722--46834762	16	2.6	16	92	0	73	63	9	19	7	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46836363--46836651	44	6.5	43	76	7	226	28	16	25	29	1.97
46836363--46836651	132	2.2	133	92	0	490	28	16	25	29	1.97
46836729--46836960	44	5.3	44	68	6	182	26	33	23	16	1.96
46836632--46837049	88	4.8	88	92	1	640	26	29	24	19	1.98
46837039--46837222	44	4.2	44	78	8	212	27	19	23	29	1.98
46837054--46837246	44	4.4	44	75	8	187	30	17	24	27	1.97
46837052--46837246	88	2.2	88	82	3	241	30	16	25	27	1.97
46838034--46838059	12	2.2	12	100	0	52	34	7	15	42	1.75
46838148--46838195	3	16.0	3	91	0	51	27	4	6	62	1.38
46838144--46838178	18	1.9	18	94	0	61	20	0	14	65	1.26
46838318--46838388	17	4.3	17	75	10	67	38	12	1	47	1.50
46838518--46838575	31	1.9	31	89	3	91	34	3	3	58	1.32
46838719--46838756	18	2.1	18	85	9	51	21	0	2	76	0.91
46840803--46840936	40	3.3	40	90	0	214	48	25	8	17	1.75
46841239--46841617	205	1.8	205	88	0	578	42	13	9	33	1.77
46850976--46851023	18	2.7	18	90	0	60	29	8	12	50	1.69
46854439--46854510	36	2.0	37	84	13	96	61	1	0	37	1.05
46854456--46854501	17	2.7	17	72	0	56	67	0	0	32	0.91
46855657--46855763	54	2.0	54	92	0	178	32	23	17	26	1.97
46863559--46863604	21	2.2	20	80	3	56	15	36	13	34	1.86
46884057--46884090	17	2.0	17	88	0	50	58	11	0	29	1.33
46886280--46886379	52	1.9	52	85	4	139	36	5	19	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46890690--46890714	2	12.5	2	100	0	50	0	48	0	52	1.00
46891984--46892081	38	2.6	38	93	0	160	29	16	20	33	1.94
46896509--46896550	11	3.8	11	81	12	59	52	21	2	23	1.59
46896510--46896561	22	2.4	22	90	0	77	48	23	5	23	1.72
46896528--46896751	111	2.0	111	100	0	448	39	20	11	28	1.87
46902611--46902645	15	2.4	15	90	4	54	48	0	8	42	1.33
46910101--46910155	22	2.7	20	73	18	51	40	1	3	54	1.28
46910223--46910262	19	2.0	20	85	4	55	27	2	5	65	1.27
46917931--46917971	19	2.1	20	86	13	59	36	12	19	31	1.89
46922006--46922100	27	3.5	27	81	8	104	27	15	23	33	1.95
46926448--46926609	46	3.6	44	89	4	227	32	14	24	27	1.95
46934614--46934640	13	2.1	13	100	0	54	55	14	14	14	1.70
46938898--46938927	16	1.9	16	93	6	53	40	0	3	56	1.16
46938915--46938953	16	2.5	15	84	8	51	58	2	0	38	1.12
46938954--46939001	9	5.1	9	85	7	60	47	2	0	50	1.12
46944485--46944554	35	2.0	35	97	0	131	35	11	27	25	1.90
46957122--46957181	30	2.0	30	96	0	111	33	43	5	18	1.72
46960160--46960199	18	2.2	18	95	0	71	47	15	10	27	1.77
46961856--46961886	15	2.1	15	93	0	53	45	3	19	32	1.66
46965202--46965537	74	4.6	74	99	0	656	47	10	14	27	1.76
46967448--46968100	72	9.1	72	93	2	1039	28	19	22	29	1.98
46969268--46969339	36	2.0	36	100	0	144	19	13	13	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46974289--46974349	7	8.3	7	77	15	52	75	8	1	14	1.11
46974279--46974336	30	1.9	30	100	0	116	74	6	3	15	1.17
46974283--46974349	14	4.5	15	74	10	66	74	7	2	14	1.16
46974279--46974347	30	2.3	30	92	5	113	73	7	2	15	1.17
46975046--46975122	3	25.7	3	78	0	82	61	5	3	29	1.36
46976383--46976977	100	5.9	100	85	2	739	24	20	22	32	1.98
46976400--46976962	50	11.3	50	68	7	239	23	20	23	32	1.98
46986609--46986638	11	2.7	11	100	0	60	23	10	6	60	1.52
46990111--46990656	100	5.5	100	86	1	619	33	23	18	23	1.97
46990123--46990508	50	7.7	50	70	6	280	34	24	18	22	1.96
47004671--47004734	22	3.2	19	75	14	65	42	1	3	53	1.26
47004732--47004773	19	2.2	20	86	4	59	40	0	4	54	1.21
47005806--47005851	21	2.2	21	100	0	92	52	13	15	19	1.75
47012086--47012127	21	2.0	21	95	0	75	30	14	7	47	1.71
47016089--47016139	23	2.2	24	89	3	77	5	13	1	78	1.02
47016086--47016153	33	2.1	33	81	10	77	5	16	2	75	1.13
47021311--47021369	29	2.0	31	86	6	86	44	11	6	37	1.68
47021512--47021542	15	2.0	16	93	6	55	48	0	0	51	1.00
47022932--47022962	15	2.0	16	93	6	55	48	0	0	51	1.00
47023050--47023166	59	2.0	60	96	1	218	27	9	21	41	1.83
47023515--47023561	23	2.0	24	91	4	78	46	0	2	51	1.13
47023540--47023591	19	2.7	20	82	11	63	36	0	7	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47025864--47025906	21	2.0	22	90	4	70	6	6	16	69	1.32
47027028--47027071	21	2.1	22	87	8	65	25	4	2	68	1.20
47028030--47028184	41	3.8	42	75	14	153	15	16	29	39	1.89
47028030--47028185	82	1.9	82	85	10	221	15	16	28	39	1.89
47028009--47028199	82	2.3	81	81	12	212	18	16	28	37	1.92
47029617--47029650	13	2.6	13	80	0	50	23	47	0	29	1.52
47030960--47031057	24	4.2	23	65	15	58	43	3	5	47	1.40
47031036--47031206	21	7.5	22	64	31	58	42	5	4	46	1.48
47030947--47031209	69	3.8	69	93	0	438	43	5	4	46	1.46
47030976--47031172	21	8.8	21	64	21	71	42	5	3	48	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161