genome.fa.s22.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  84  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26592961--26593030	32	2.2	32	97	0	131	40	12	18	28	1.88
26596395--26596605	75	2.8	74	90	1	323	10	44	9	36	1.71
26599064--26599111	25	1.9	25	83	8	62	47	4	0	47	1.21
26599177--26599218	13	2.9	14	80	13	50	54	0	0	45	0.99
26599181--26599217	16	2.3	16	86	13	58	59	0	0	40	0.97
26600215--26600247	16	2.0	17	94	5	59	27	12	0	60	1.32
26600902--26600956	23	2.3	24	82	17	62	54	0	1	43	1.10
26601238--26601299	29	2.1	30	87	3	90	33	9	4	51	1.56
26601864--26601912	25	2.0	25	87	0	71	24	2	14	59	1.46
26602338--26602512	85	2.1	85	92	0	287	25	21	18	34	1.96
26609139--26609178	14	2.9	14	84	0	53	32	7	17	42	1.77
26609162--26609201	20	2.0	20	90	0	62	27	10	12	50	1.72
26609300--26609338	20	2.0	20	94	0	69	48	2	0	48	1.15
26611917--26611984	14	5.2	14	73	19	58	61	2	32	2	1.26
26611917--26611984	3	22.0	3	75	14	59	61	2	32	2	1.26
26611917--26611984	25	2.7	25	76	19	77	61	2	32	2	1.26
26612046--26612087	6	6.8	6	82	15	50	45	0	54	0	0.99
26612049--26612087	18	2.2	18	95	0	69	43	0	56	0	0.99
26614238--26614297	29	2.0	32	83	9	81	18	26	6	48	1.72
26616303--26616369	34	1.9	36	82	11	86	49	1	2	46	1.26
26616372--26616422	26	2.0	26	88	3	77	47	7	0	45	1.32
26616642--26616698	16	3.5	15	77	11	51	45	5	19	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26616825--26616989	57	2.8	57	78	15	167	52	3	1	42	1.26
26625747--26626340	309	1.9	309	91	0	974	34	22	17	26	1.96
26628775--26628817	11	3.8	11	78	6	50	30	0	4	65	1.13
26630298--26630355	29	2.0	29	93	0	98	41	0	20	37	1.53
26630519--26630578	21	2.9	21	72	7	59	20	21	23	35	1.96
26630519--26630665	42	3.5	42	70	9	138	19	19	23	37	1.94
26630605--26630665	21	2.9	22	70	7	54	16	18	27	37	1.92
26630517--26630689	83	2.1	83	92	0	292	20	18	24	36	1.94
26636055--26636342	132	2.2	131	83	4	332	55	14	12	17	1.69
26638031--26638068	18	2.2	17	86	9	51	36	7	0	55	1.29
26642062--26642106	18	2.4	19	85	10	58	2	11	6	80	0.99
26642062--26642106	19	2.4	18	85	3	54	2	11	6	80	0.99
26642043--26642104	29	2.1	29	82	5	72	6	8	6	79	1.07
26643530--26643560	11	2.8	11	100	0	62	35	0	9	54	1.33
26645416--26645454	20	1.9	21	85	15	55	20	0	17	61	1.34
26646864--26646981	27	4.4	27	87	8	168	20	17	18	43	1.89
26646850--26646966	54	2.2	54	87	3	164	22	15	22	40	1.91
26646863--26646981	54	2.2	54	90	3	186	20	17	19	42	1.89
26652121--26652149	8	3.6	8	100	0	58	89	0	0	10	0.48
26657853--26657902	16	2.9	17	76	8	57	46	2	4	48	1.32
26661953--26661984	15	2.1	15	100	0	64	18	37	21	21	1.94
26665279--26665322	15	2.8	15	82	6	52	40	2	9	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26666446--26666496	20	2.5	20	83	0	57	39	23	27	9	1.86
26666465--26666507	20	2.2	20	86	0	59	46	27	23	2	1.64
26673187--26673213	8	3.4	8	100	0	54	44	33	0	22	1.53
26676499--26676529	15	2.0	16	93	6	55	25	9	6	58	1.54
26677278--26677309	12	2.7	12	95	0	55	34	37	0	28	1.57
26679654--26680076	138	3.1	135	88	5	596	46	6	7	39	1.57
26692647--26693027	58	6.6	59	78	6	296	37	21	14	26	1.92
26692678--26693003	29	11.2	29	73	9	211	38	21	14	25	1.91
26692648--26693027	87	4.4	87	74	7	281	37	21	14	26	1.92
26692647--26693090	29	15.4	30	72	10	178	37	20	15	25	1.93
26698417--26698501	25	3.4	25	77	6	109	29	18	21	30	1.97
26703016--26703061	19	2.4	19	85	3	56	36	17	0	45	1.49
26703411--26703464	18	3.1	17	81	7	63	35	18	1	44	1.61
26704449--26704496	18	2.7	18	87	6	62	54	4	0	41	1.20
26704582--26704648	33	2.1	31	89	10	100	50	5	1	41	1.36
26704712--26704768	29	2.0	29	82	6	71	50	5	1	42	1.35
26705722--26706168	226	2.0	225	98	0	867	29	18	24	28	1.98
26726020--26726051	16	1.9	17	93	6	57	56	0	0	43	0.99
26726494--26726536	5	8.8	5	92	5	52	44	9	0	46	1.35
26726144--26726636	256	1.9	249	84	8	649	36	10	6	46	1.65
26740197--26740231	16	2.4	14	90	9	52	34	0	0	65	0.93
26752253--26752279	7	3.9	7	100	0	54	29	29	0	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26752525--26752557	16	2.0	17	88	5	50	39	15	0	45	1.46
26752718--26752853	40	3.5	40	72	5	116	38	21	19	20	1.94
26752886--26753149	41	6.5	41	87	3	338	18	22	23	35	1.96
26752887--26753129	122	2.0	122	86	2	337	19	23	23	34	1.96
26753723--26753761	21	1.9	21	89	5	62	20	0	41	38	1.53
26753722--26753755	14	2.4	14	90	9	52	17	0	44	38	1.49
26753743--26754170	177	2.4	179	93	3	749	26	1	26	44	1.64
26753743--26754170	90	4.8	89	93	4	740	26	1	26	44	1.64
26754205--26754243	18	2.2	18	90	4	62	35	7	20	35	1.81
26755563--26755648	38	2.3	38	97	0	163	22	18	12	46	1.83
26756005--26756067	33	1.9	33	90	0	99	19	0	14	66	1.25
26772970--26773008	21	1.9	21	89	5	62	20	0	41	38	1.53
26772969--26773002	14	2.4	14	90	9	52	17	0	44	38	1.49
26772910--26773227	89	3.8	81	85	8	392	29	1	23	44	1.62
26772990--26773231	89	2.8	87	91	6	397	27	1	25	45	1.63
26776447--26776677	82	2.8	82	77	0	246	22	23	26	28	1.99
26776423--26776676	41	6.2	41	79	1	195	23	22	25	27	2.00
26777100--26777132	14	2.3	15	94	5	59	27	0	36	36	1.57
26777165--26777206	21	2.0	21	86	9	59	26	0	45	28	1.54
26777373--26777415	14	3.0	15	80	10	54	18	0	46	34	1.50
26778051--26778096	22	2.1	22	88	8	67	80	0	6	13	0.89
26778103--26778169	20	3.2	21	73	14	59	44	7	0	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26778117--26778171	23	2.5	22	80	8	60	49	7	0	43	1.30
26779619--26779663	17	2.7	17	75	25	51	17	0	13	68	1.20
26779619--26779681	32	1.9	33	90	3	101	20	0	14	65	1.27
26780579--26780611	16	2.1	16	100	0	66	51	0	18	30	1.46
26780675--26781233	9	62.8	9	68	22	161	45	13	1	39	1.52
26780710--26780742	16	2.1	16	100	0	66	45	24	0	30	1.53
26780731--26780852	22	5.6	22	70	21	71	49	12	0	38	1.41
26780708--26781001	56	5.1	56	74	19	225	47	12	0	39	1.42
26780729--26781035	87	3.5	83	87	9	359	47	12	0	40	1.43
26780730--26781029	143	2.1	143	96	0	555	47	12	0	40	1.43
26780863--26780995	22	6.1	22	74	19	93	46	11	0	42	1.39
26780729--26781035	31	10.4	31	78	13	317	47	12	0	40	1.43
26780807--26781029	56	4.0	55	89	6	237	46	11	0	41	1.44
26781019--26781053	16	2.2	16	100	0	70	45	25	0	28	1.54
26781078--26781220	25	5.9	25	73	11	100	46	15	2	35	1.61
26781074--26781188	34	3.2	34	74	15	99	44	17	1	36	1.59
26781109--26781228	16	7.9	16	66	19	78	45	16	3	34	1.64
26780730--26781092	143	2.6	142	90	3	520	45	12	0	41	1.46
26786651--26786814	66	2.5	65	86	4	204	42	17	26	14	1.86
26786808--26786895	21	4.2	21	80	2	97	34	13	43	9	1.76
26787247--26787494	43	5.7	43	77	0	217	23	18	29	28	1.98
26787222--26787455	87	2.7	86	82	2	254	26	16	29	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26787289--26787494	87	2.4	86	81	4	236	23	19	29	27	1.98
26789176--26789220	20	2.2	20	80	7	56	37	2	8	51	1.46
26790188--26790250	27	2.4	27	83	2	74	44	9	14	31	1.77
26790203--26790257	27	2.0	27	85	3	74	45	9	14	30	1.76
26804658--26804724	27	2.5	27	95	0	116	19	10	25	44	1.82
26813535--26813589	21	2.6	21	79	0	65	21	20	30	27	1.98
26819070--26819110	20	2.0	20	90	0	64	34	14	4	46	1.66
26820182--26820224	21	2.0	21	86	8	61	32	16	2	48	1.58
26823629--26823699	30	2.4	31	92	0	101	16	26	35	21	1.95
26823638--26823689	15	3.5	15	78	19	63	21	28	32	17	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161