genome.fa.s22.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  114  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36225029--36225340	30	10.5	30	68	10	138	22	25	12	39	1.89
36225211--36225288	29	2.7	29	81	0	93	17	28	12	41	1.87
36225270--36225339	29	2.4	29	85	0	104	24	27	11	37	1.89
36227381--36227734	30	11.9	30	73	9	183	23	25	12	37	1.91
36227378--36227558	60	3.0	60	90	1	220	24	25	12	37	1.91
36227397--36227734	90	3.8	89	82	4	360	23	26	12	37	1.90
36227457--36227677	30	7.4	30	76	7	218	20	26	13	39	1.90
36227665--36227734	29	2.4	29	80	0	77	25	27	8	38	1.85
36235142--36235244	30	3.4	30	78	0	107	24	21	13	40	1.89
36235232--36235391	30	5.4	29	77	9	153	18	27	13	40	1.89
36235384--36235449	29	2.3	29	81	0	78	25	22	13	37	1.91
36237952--36237989	20	1.9	20	89	10	60	73	0	2	23	0.95
36238147--36238186	20	2.0	21	85	5	55	62	2	20	15	1.43
36242426--36242481	28	2.0	29	86	10	80	21	16	3	58	1.52
36243679--36243936	139	1.9	139	90	3	421	15	23	13	48	1.80
36250777--36250806	13	2.2	14	94	5	53	26	3	6	63	1.35
36252881--36252934	2	27.0	2	100	0	108	50	50	0	0	1.00
36253932--36253974	20	2.2	20	91	8	70	72	0	25	2	0.97
36253943--36253994	26	2.0	27	81	11	63	73	0	23	3	1.00
36255135--36255178	19	2.3	19	84	7	54	63	11	4	20	1.44
36255192--36255263	19	3.9	19	73	8	60	66	2	2	27	1.19
36255061--36255354	10	30.1	10	64	16	66	58	6	3	31	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36255345--36255379	18	1.9	18	88	0	52	57	0	2	40	1.14
36257274--36257302	4	7.2	4	100	0	58	48	0	0	51	1.00
36259857--36260041	101	1.8	102	96	3	347	25	17	25	31	1.97
36259857--36260039	51	3.6	50	80	6	190	25	17	25	31	1.97
36259963--36260043	26	3.2	26	62	28	64	24	14	27	33	1.95
36260045--36260139	45	2.1	45	88	3	147	25	18	24	31	1.98
36260183--36260226	23	1.9	22	82	17	54	38	0	25	36	1.56
36263862--36263926	18	3.6	18	76	14	62	32	4	0	63	1.15
36263863--36263931	28	2.5	28	81	6	79	33	4	0	62	1.15
36263877--36264095	10	23.3	10	67	20	66	32	2	4	60	1.30
36263895--36263991	49	2.0	49	83	4	124	36	1	3	59	1.20
36263986--36264056	28	2.5	29	81	4	81	29	4	7	59	1.43
36263949--36264090	37	3.9	34	74	20	94	30	2	5	61	1.30
36285901--36285961	29	2.1	29	93	0	104	32	11	32	22	1.90
36289042--36289103	11	5.6	11	74	0	52	40	4	0	54	1.22
36289049--36289125	22	3.5	22	73	8	59	41	2	0	55	1.13
36289078--36289126	11	4.3	12	75	19	52	40	0	0	59	0.98
36289035--36289119	33	2.6	32	87	5	118	38	3	0	57	1.16
36289087--36289126	21	1.9	21	94	0	71	40	0	0	60	0.97
36289086--36289133	21	2.2	20	82	13	60	35	0	4	60	1.16
36295747--36295839	46	2.0	46	93	0	159	44	17	18	20	1.87
36296274--36296320	3	15.7	3	100	0	94	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36302830--36302954	61	2.0	62	87	1	180	35	2	16	46	1.60
36302847--36303007	61	2.7	60	79	9	166	38	3	16	41	1.64
36316291--36316331	13	3.1	14	82	10	50	48	17	14	19	1.81
36331044--36331138	27	3.5	26	82	4	91	32	27	14	25	1.95
36337637--36337678	19	2.3	18	77	18	50	40	0	2	57	1.12
36347640--36347680	21	2.0	21	85	9	57	19	4	2	73	1.13
36350440--36350568	55	2.3	55	85	2	170	8	17	13	60	1.57
36350470--36350583	55	2.1	55	80	6	124	9	17	13	59	1.60
36350579--36350701	25	4.7	25	69	16	70	12	14	15	57	1.65
36350620--36350658	15	2.6	15	83	0	51	10	15	12	61	1.56
36350523--36350701	30	6.1	30	70	6	107	12	15	14	57	1.65
36350633--36350681	20	2.5	20	82	0	62	8	14	16	61	1.56
36350645--36350703	25	2.4	25	82	0	73	10	11	15	62	1.54
36350631--36350721	45	2.0	45	82	0	110	8	14	14	62	1.53
36360791--36360821	11	2.7	11	95	5	53	35	0	6	58	1.24
36363357--36363398	22	2.0	22	85	4	59	52	11	19	16	1.74
36364305--36364331	13	2.1	13	100	0	54	7	22	40	29	1.81
36367034--36367137	26	4.0	26	82	0	109	29	33	14	22	1.93
36371610--36371689	10	7.8	10	80	9	72	35	3	0	61	1.14
36371594--36371689	29	3.2	29	77	13	90	33	6	0	60	1.22
36378043--36378108	33	2.1	32	91	5	107	40	15	22	21	1.90
36377924--36378257	173	1.9	174	90	1	537	41	11	25	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36384087--36384231	67	2.2	67	81	7	161	32	5	3	58	1.38
36384116--36384216	18	5.4	18	72	14	64	29	3	3	62	1.31
36384024--36384216	10	20.3	9	67	19	65	33	6	2	57	1.37
36384715--36384773	18	3.3	17	79	11	64	66	5	1	27	1.22
36384722--36384849	27	4.6	28	72	14	88	63	4	3	28	1.30
36384869--36384925	31	1.9	30	86	10	82	59	1	7	31	1.34
36385508--36385630	9	12.7	9	66	19	52	26	3	2	67	1.18
36385558--36385600	19	2.3	19	84	8	52	27	2	4	65	1.25
36385587--36385627	19	2.2	19	95	0	73	31	0	2	65	1.05
36393412--36393535	37	3.2	39	75	12	128	33	21	17	26	1.96
36401573--36401844	69	4.0	69	82	1	332	31	25	23	19	1.98
36402203--36402242	21	1.9	20	90	10	62	7	55	0	37	1.29
36407642--36407681	22	2.0	20	85	14	55	25	2	17	55	1.55
36413605--36413662	11	5.6	11	76	19	54	44	0	0	55	0.99
36413608--36413662	20	2.8	20	86	5	76	45	0	0	54	0.99
36416208--36416232	11	2.3	11	100	0	50	36	16	8	40	1.77
36418464--36418491	13	2.2	13	100	0	56	35	28	7	28	1.84
36422723--36422771	21	2.3	21	86	13	66	36	2	2	59	1.21
36423013--36423074	16	3.9	16	84	0	79	30	19	6	43	1.76
36423020--36423083	32	2.0	32	84	0	83	31	20	4	43	1.72
36426055--36426112	31	1.9	31	85	3	82	39	5	12	43	1.64
36427153--36427198	14	3.2	14	79	14	58	67	0	2	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36428889--36428986	51	1.9	51	89	0	151	30	18	18	32	1.95
36435901--36435948	21	2.2	22	85	10	64	50	0	0	50	1.00
36435941--36435988	18	2.6	19	83	9	64	50	0	2	47	1.12
36440578--36440663	43	2.0	43	95	0	154	36	11	39	12	1.80
36441278--36441419	61	2.4	59	81	8	164	52	4	0	42	1.26
36448705--36448771	18	3.7	18	89	0	98	23	5	23	46	1.74
36448705--36448771	27	2.5	27	92	0	116	23	5	23	46	1.74
36448705--36448771	9	7.4	9	86	0	89	23	5	23	46	1.74
36449107--36449305	41	4.9	41	86	0	263	30	27	21	20	1.98
36449356--36449449	40	2.4	39	85	3	125	21	21	21	36	1.96
36449516--36449723	89	2.4	88	86	4	271	33	12	10	44	1.76
36449653--36449881	79	2.9	79	87	3	318	31	16	12	39	1.85
36449811--36450281	84	5.6	84	78	9	270	31	13	12	42	1.80
36449976--36450288	84	3.8	84	80	10	340	31	10	11	46	1.74
36449976--36450198	79	2.7	79	87	6	306	32	9	10	46	1.72
36449976--36450288	163	1.9	164	83	7	413	31	10	11	46	1.74
36454550--36454586	18	2.1	18	100	0	74	37	10	10	40	1.75
36454550--36454595	18	2.6	18	89	6	58	39	10	10	39	1.76
36455747--36455858	32	3.1	38	69	21	105	30	8	15	46	1.74
36455746--36455894	68	2.1	70	83	3	185	28	9	17	44	1.80
36455746--36455894	71	2.1	70	82	6	169	28	9	17	44	1.80
36456885--36456931	20	2.4	20	78	3	60	34	6	12	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36459842--36459895	10	5.5	10	77	18	60	24	29	18	27	1.98
36459840--36459895	20	2.8	20	94	2	96	23	30	17	28	1.97
36465950--36466022	33	2.2	33	88	7	105	46	15	8	30	1.74
36466959--36467016	29	2.0	30	82	3	73	29	10	10	50	1.70
36467143--36467175	17	1.9	17	88	11	50	39	9	0	51	1.34
36467300--36467332	14	2.3	15	89	5	50	54	0	0	45	0.99
36485356--36485426	29	2.4	29	95	0	133	49	14	11	25	1.76
36490803--36490848	23	2.0	23	100	0	92	43	21	13	21	1.86
36497856--36497899	23	1.9	23	85	0	61	25	2	0	72	0.96
36501298--36501386	30	3.0	30	78	3	81	13	25	25	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161