genome.fa.s22.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  159  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49661163--49661486	178	1.8	178	93	0	558	25	11	22	40	1.87
49668021--49668067	10	4.6	10	85	15	53	10	2	0	87	0.63
49668021--49668067	12	3.9	12	81	10	60	10	2	0	87	0.63
49670404--49670469	26	2.5	26	80	0	78	36	4	19	39	1.72
49677728--49677776	25	1.9	26	84	12	66	69	2	16	12	1.28
49684672--49685032	100	3.6	98	83	5	406	32	16	25	26	1.96
49685549--49685647	17	5.6	17	88	7	144	38	12	12	37	1.80
49685541--49685647	35	3.0	35	94	4	178	38	11	13	37	1.80
49685549--49685647	18	5.6	18	90	4	157	38	12	12	37	1.80
49687863--49687901	17	2.3	17	95	0	69	30	15	28	25	1.96
49689092--49689144	24	2.2	24	82	0	61	54	9	3	32	1.50
49689244--49689318	24	3.2	23	78	16	73	14	25	13	46	1.81
49689253--49689318	24	2.7	23	83	2	78	16	28	12	42	1.84
49691851--49691885	11	3.1	12	88	12	56	34	0	0	65	0.93
49691851--49691901	21	2.4	22	80	6	61	41	0	0	58	0.98
49692014--49692076	30	2.1	30	94	5	110	57	17	3	22	1.54
49692106--49692148	22	2.0	22	85	0	59	55	9	13	20	1.66
49710600--49710702	3	33.3	3	69	23	63	64	1	1	32	1.16
49710594--49710702	15	6.9	15	77	16	89	64	1	1	32	1.15
49710600--49710704	18	5.8	18	73	17	94	63	1	1	32	1.16
49710601--49710697	27	3.5	29	75	12	98	63	2	2	31	1.17
49712281--49712765	88	5.5	88	66	13	264	27	18	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49712183--49712681	87	5.7	87	67	14	247	28	19	18	33	1.96
49712223--49712782	175	3.2	174	89	3	786	26	19	19	34	1.96
49716968--49717017	14	3.5	14	79	15	50	40	10	26	24	1.86
49720922--49721024	3	33.3	3	69	23	63	64	1	1	32	1.16
49720916--49721024	15	6.9	15	77	16	89	64	1	1	32	1.15
49720922--49721026	18	5.8	18	73	17	94	63	1	1	32	1.16
49720923--49721019	27	3.5	29	75	12	98	63	2	2	31	1.17
49723997--49724077	17	4.8	17	95	1	146	17	28	40	13	1.87
49724146--49724189	18	2.5	18	85	3	63	13	31	38	15	1.87
49726884--49726997	59	1.9	59	96	0	210	37	8	8	44	1.67
49727187--49727243	22	2.6	21	76	20	62	59	0	5	35	1.20
49728327--49728380	28	1.9	28	81	7	65	29	5	16	48	1.69
49733039--49733075	16	2.3	16	90	9	58	54	5	2	37	1.38
49733599--49733666	18	3.9	17	71	17	59	44	1	1	52	1.19
49739263--49739289	14	1.9	14	100	0	54	29	0	33	37	1.58
49743280--49743350	20	3.6	19	79	9	72	57	7	0	35	1.26
49744167--49744268	31	3.4	31	74	10	113	51	3	2	41	1.35
49744164--49744277	58	2.0	58	92	0	192	50	3	2	42	1.33
49744923--49744987	23	3.0	22	77	16	64	36	6	15	41	1.72
49744931--49744987	23	2.5	22	83	10	71	35	5	17	42	1.72
49752779--49752891	40	2.8	40	92	4	176	23	29	23	23	1.99
49756909--49756938	9	3.3	9	100	0	60	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49758315--49758346	5	6.6	5	92	7	57	18	0	0	81	0.70
49758315--49758345	9	3.3	9	91	8	53	19	0	0	80	0.71
49771015--49771258	126	1.9	126	98	0	470	37	15	18	28	1.91
49771359--49771408	13	4.2	12	80	14	52	68	0	4	28	1.08
49771716--49771746	14	2.2	14	94	0	53	67	0	0	32	0.91
49771699--49771754	21	2.8	21	81	10	55	60	1	0	37	1.07
49771718--49771754	19	2.0	18	94	5	65	67	0	0	32	0.91
49771729--49771860	60	2.2	60	84	9	162	62	5	5	27	1.39
49772141--49772213	18	4.0	18	71	16	69	17	1	54	26	1.51
49772155--49772225	37	1.9	37	97	0	133	18	1	52	28	1.54
49772196--49772252	29	2.0	29	86	6	80	19	3	45	31	1.67
49772609--49772634	7	3.7	7	100	0	52	26	0	0	73	0.84
49773965--49774108	33	4.3	33	70	6	101	33	15	22	27	1.95
49774085--49774157	33	2.2	33	80	4	85	30	19	27	23	1.98
49776020--49776106	21	4.0	23	80	10	92	37	25	21	14	1.92
49778951--49778986	17	2.1	17	89	0	54	77	0	2	19	0.88
49780596--49780638	6	7.5	6	79	10	54	79	0	2	18	0.85
49780591--49780638	11	4.3	11	81	5	60	77	0	4	18	0.93
49780591--49780638	17	2.8	17	78	12	53	77	0	4	18	0.93
49780857--49780896	19	2.1	19	85	0	53	65	2	30	2	1.19
49780864--49780916	19	2.8	20	80	8	58	71	1	24	1	1.06
49788089--49788289	76	2.6	76	88	0	294	27	19	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49792497--49792530	17	2.0	17	94	0	59	14	11	26	47	1.79
49796018--49796049	10	3.3	10	95	4	57	62	0	6	31	1.20
49809835--49809964	18	7.2	18	80	0	134	33	12	17	36	1.87
49814096--49814145	26	1.9	25	84	15	66	58	0	2	40	1.10
49819105--49819141	12	2.8	13	88	12	58	45	0	0	54	1.00
49821751--49821799	24	1.9	27	88	12	77	42	4	0	53	1.20
49829754--49829797	21	2.1	21	91	0	70	20	29	20	29	1.98
49833900--49833945	6	7.7	6	92	0	65	23	21	36	17	1.94
49833900--49833960	12	5.1	12	87	0	77	24	18	40	16	1.90
49833900--49833957	18	3.2	18	85	0	71	24	18	39	17	1.92
49838553--49838613	6	10.3	6	87	1	61	22	21	40	14	1.90
49839800--49839853	15	3.3	15	74	18	54	44	0	1	53	1.11
49839935--49839980	22	2.1	22	83	0	56	50	0	0	50	1.00
49840031--49840062	13	2.4	14	85	15	50	43	0	0	56	0.99
49842226--49842313	46	1.9	46	95	0	158	20	21	29	28	1.98
49845461--49845503	18	2.4	18	84	0	59	23	20	39	16	1.92
49846937--49846980	19	2.3	18	80	7	52	56	4	0	38	1.20
49847850--49847902	26	2.0	26	96	0	97	60	7	13	18	1.56
49847854--49847910	26	2.2	26	83	0	69	63	8	10	17	1.51
49860423--49860451	11	2.5	12	88	11	51	58	0	24	17	1.38
49862943--49863029	44	2.0	44	93	0	147	17	20	20	41	1.90
49866332--49866365	10	3.5	10	88	8	52	8	0	5	85	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49866338--49866384	24	1.9	25	91	4	78	8	2	8	80	0.97
49866352--49866381	15	1.9	16	93	6	53	10	3	6	80	1.01
49866783--49866811	11	2.5	12	88	11	51	58	0	24	17	1.38
49866960--49867010	26	1.9	27	84	4	68	56	11	9	21	1.63
49870994--49871248	55	4.8	54	80	8	224	35	17	24	22	1.95
49871001--49871203	108	1.9	110	86	4	295	33	17	24	24	1.96
49871257--49871433	53	3.4	53	80	9	170	35	17	25	21	1.95
49871070--49871436	185	2.0	185	96	0	671	34	17	25	22	1.96
49873818--49873896	9	8.8	9	97	0	131	22	10	29	37	1.87
49881552--49881582	16	1.9	16	93	0	53	35	22	0	41	1.54
49881549--49881588	20	2.0	20	85	0	53	37	22	0	40	1.54
49881826--49881888	31	2.0	31	100	0	126	22	28	15	33	1.95
49881857--49882060	55	3.8	54	81	6	243	23	25	16	35	1.95
49888754--49888799	22	2.1	22	88	11	69	32	0	2	65	1.05
49888777--49888817	15	2.6	16	81	14	50	36	0	0	63	0.95
49888776--49888942	61	2.8	59	83	8	203	42	0	3	53	1.23
49889091--49889139	16	3.1	16	78	0	62	28	28	2	40	1.68
49896274--49896443	83	2.0	84	87	1	243	31	6	22	40	1.79
49896691--49896757	33	2.0	33	100	0	134	31	17	11	38	1.87
49899423--49899469	21	2.2	22	88	3	69	21	36	19	23	1.95
49901267--49901313	21	2.2	22	92	3	78	21	19	38	21	1.94
49903675--49903717	23	2.0	23	90	9	72	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49904246--49904279	14	2.4	14	86	13	52	50	20	2	26	1.63
49908653--49908689	17	2.1	18	85	14	51	40	2	0	56	1.13
49910458--49910500	23	1.9	22	85	4	59	83	4	6	4	0.89
49910461--49910501	18	2.3	18	87	8	57	82	4	7	4	0.93
49911907--49912081	94	1.8	96	87	3	264	43	1	5	49	1.33
49915275--49915347	6	12.2	6	95	0	92	50	24	0	24	1.49
49915365--49915808	219	2.0	219	97	0	834	34	13	19	32	1.90
49924536--49924646	37	3.0	37	97	0	213	29	22	8	39	1.83
49929564--49929603	20	2.0	20	90	4	64	55	7	0	37	1.29
49933203--49933227	13	1.9	13	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161