genome.fa.s22.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  132  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41222623--41222657	17	1.9	18	88	11	54	0	28	0	71	0.86
41222633--41222711	27	2.9	28	74	18	78	5	17	6	70	1.26
41222703--41222728	13	2.0	13	100	0	52	15	7	0	76	0.99
41222698--41222735	19	2.0	19	85	10	51	15	7	2	73	1.17
41225285--41225415	41	3.3	39	71	15	101	34	21	16	28	1.94
41226333--41226365	12	2.8	12	90	9	50	9	15	0	75	1.03
41229327--41229372	19	2.3	20	89	10	69	34	2	0	63	1.07
41242790--41242840	25	2.0	26	81	11	61	47	0	13	39	1.43
41244463--41244524	26	2.3	27	81	10	74	14	19	20	45	1.85
41252347--41252386	21	2.0	20	90	9	64	40	5	0	55	1.22
41255182--41255206	12	2.1	12	100	0	50	84	8	0	8	0.79
41256074--41256121	22	2.2	22	82	14	55	31	6	6	56	1.49
41268738--41269084	124	2.8	125	91	0	554	28	14	23	33	1.94
41272095--41272223	64	2.0	64	98	0	249	48	12	5	33	1.63
41272642--41272681	18	2.2	18	90	0	62	40	7	27	25	1.82
41273520--41273557	20	1.9	20	84	10	51	55	7	2	34	1.43
41274440--41274473	14	2.5	13	86	13	50	73	0	0	26	0.83
41274440--41274480	15	2.8	15	96	3	75	65	0	0	34	0.93
41274548--41274600	11	4.7	11	81	11	63	47	0	30	22	1.52
41274548--41274600	22	2.4	22	87	9	72	47	0	30	22	1.52
41274567--41274599	12	2.8	12	95	4	59	51	0	30	18	1.46
41275373--41275434	21	3.0	21	76	7	63	14	16	0	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41275445--41275499	28	2.0	29	89	7	87	32	9	1	56	1.41
41288805--41288837	4	8.2	4	100	0	66	51	24	0	24	1.48
41296233--41296286	26	2.1	26	82	0	63	57	1	0	40	1.09
41296224--41296302	33	2.4	34	77	14	85	53	2	0	44	1.14
41302482--41302520	2	19.5	2	94	0	60	5	0	43	51	1.24
41302478--41302512	16	2.2	16	94	0	61	8	0	40	51	1.33
41302480--41302514	18	1.9	18	100	0	70	8	0	40	51	1.33
41302780--41302906	29	4.1	29	72	20	123	53	9	7	29	1.61
41304452--41304555	49	2.1	49	87	0	145	30	8	9	50	1.65
41305681--41305779	44	2.3	41	75	17	92	44	1	4	50	1.27
41305714--41305795	26	2.9	28	80	10	87	42	0	1	56	1.07
41305627--41305875	110	2.2	115	88	9	361	43	1	3	51	1.25
41305835--41305868	17	2.0	17	100	0	68	41	0	0	58	0.98
41315633--41315692	19	3.3	18	73	15	61	73	3	5	18	1.16
41315679--41315718	21	1.9	21	84	0	53	75	5	10	10	1.19
41315718--41315827	56	2.0	55	85	5	150	42	20	27	10	1.83
41317008--41317309	89	3.4	88	93	1	523	28	20	28	22	1.99
41317004--41317312	44	7.0	44	94	0	510	28	20	28	22	1.99
41317331--41317491	87	1.9	87	91	0	268	33	20	21	24	1.97
41319096--41319140	3	15.0	3	81	9	56	31	4	2	62	1.27
41319096--41319151	15	3.5	15	77	13	58	32	5	3	58	1.37
41321879--41321983	29	3.6	29	100	0	210	49	13	10	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41324637--41324661	10	2.5	10	100	0	50	28	20	40	12	1.87
41326301--41326340	14	2.9	13	85	10	53	37	2	12	47	1.55
41326365--41326443	33	2.4	32	83	4	95	26	11	17	44	1.83
41326453--41326504	18	2.7	20	74	17	56	36	3	0	59	1.16
41334954--41335020	18	3.6	18	70	23	57	40	0	2	56	1.14
41334945--41335010	18	3.2	20	77	18	66	42	0	3	54	1.15
41336016--41336108	20	4.8	20	70	17	61	55	7	1	35	1.35
41336037--41336111	38	1.9	39	83	5	98	56	6	1	36	1.34
41337158--41337197	21	1.9	21	84	0	53	42	0	2	55	1.13
41337234--41337273	18	2.1	18	86	9	53	27	0	0	72	0.85
41337247--41337284	9	4.2	9	80	12	51	26	0	0	73	0.83
41337203--41337274	16	4.2	17	68	18	60	31	0	0	68	0.90
41337147--41337285	26	5.2	26	67	17	81	35	0	0	63	1.00
41339894--41339930	5	7.6	5	87	6	58	78	2	0	18	0.87
41339883--41339928	24	1.9	24	86	8	67	76	2	2	19	1.00
41344779--41344821	22	2.0	22	85	0	59	41	0	18	39	1.51
41345384--41345436	22	2.5	21	78	3	52	75	3	7	13	1.15
41346318--41346351	9	3.6	9	85	14	50	29	0	0	70	0.87
41346319--41346344	11	2.4	11	100	0	52	23	0	0	76	0.78
41348515--41348610	41	2.4	41	84	5	124	36	18	15	29	1.92
41348820--41349003	63	3.0	61	75	12	178	40	16	5	36	1.74
41353864--41353911	22	2.2	22	84	0	60	35	18	10	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41353920--41354022	33	3.1	33	84	5	127	21	13	24	40	1.89
41354019--41354304	18	16.3	18	76	4	253	31	28	15	25	1.95
41354033--41354300	88	3.0	88	80	3	297	31	29	14	24	1.95
41354019--41354304	53	5.4	53	80	5	285	31	28	15	25	1.95
41354024--41354300	35	7.9	35	81	3	279	31	29	14	24	1.95
41354064--41354348	53	5.4	53	82	5	233	30	28	16	25	1.97
41354061--41354348	18	16.3	18	76	5	221	30	28	16	25	1.96
41354352--41354386	18	2.0	18	94	5	63	25	17	22	34	1.96
41357900--41357940	21	2.0	21	85	0	55	41	2	17	39	1.62
41358262--41358314	24	2.2	24	83	6	63	15	35	18	30	1.92
41358521--41358574	25	2.2	25	82	0	63	22	22	20	35	1.96
41360530--41360607	5	14.8	5	75	12	68	38	17	5	38	1.72
41360523--41360607	32	3.0	27	73	15	80	37	17	4	40	1.71
41364007--41364146	41	3.4	41	84	0	181	30	25	20	22	1.98
41364007--41364166	82	2.0	82	80	0	185	31	26	20	21	1.98
41364034--41364174	41	3.4	41	84	1	131	31	26	19	22	1.98
41367058--41367123	20	3.3	20	70	8	71	42	18	25	13	1.87
41367060--41367145	40	2.2	40	95	0	154	41	18	26	12	1.87
41367862--41367915	19	2.7	21	91	5	85	35	9	14	40	1.78
41368257--41368303	3	15.7	3	86	0	67	31	4	2	61	1.27
41368418--41368461	17	2.6	17	82	3	54	40	9	0	50	1.34
41368628--41368687	30	2.1	30	81	12	72	33	5	6	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41370243--41370284	3	14.0	3	89	0	57	61	2	4	30	1.29
41370267--41370326	21	2.9	20	74	16	59	65	6	1	26	1.27
41370601--41370647	23	2.0	24	91	4	78	40	17	6	36	1.75
41370601--41370666	21	3.0	24	79	18	81	39	16	7	36	1.77
41370601--41370677	19	3.7	21	84	11	88	41	15	7	35	1.76
41371344--41371462	44	2.7	44	84	7	152	28	27	16	26	1.97
41371404--41371530	68	1.9	68	85	6	177	31	24	18	25	1.98
41371532--41371845	88	3.6	88	91	0	497	18	24	30	27	1.98
41371828--41372334	44	11.5	44	76	4	470	29	26	16	28	1.97
41371830--41372334	132	3.8	132	92	0	823	29	26	16	28	1.96
41377155--41377198	17	2.6	17	85	3	63	40	11	0	47	1.39
41377279--41377327	23	2.1	23	81	7	55	34	6	0	59	1.22
41384756--41384812	15	3.8	15	76	13	55	59	0	3	36	1.14
41384742--41384808	32	2.1	31	83	8	82	58	0	2	38	1.14
41392634--41392688	29	1.9	28	85	3	74	43	10	9	36	1.72
41393167--41393214	15	3.1	15	75	16	53	41	2	0	56	1.11
41399955--41400180	112	2.0	112	99	0	443	32	14	16	36	1.89
41408912--41409147	44	5.1	44	72	15	172	32	18	22	27	1.97
41408769--41409198	142	3.0	141	95	1	743	33	18	21	26	1.96
41409118--41409225	41	2.6	41	75	10	101	33	18	20	27	1.96
41417776--41417951	78	2.3	78	84	0	217	39	26	14	19	1.90
41417736--41417951	26	8.3	26	80	2	191	40	26	12	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41420875--41420988	57	2.0	57	100	0	228	40	7	8	43	1.63
41421354--41421452	43	2.3	44	89	1	146	28	17	25	29	1.97
41425417--41425595	92	2.0	91	85	5	245	36	16	10	35	1.84
41425734--41425789	29	1.9	29	82	7	69	62	0	1	35	1.06
41425990--41426161	19	8.9	19	68	12	73	28	5	2	63	1.28
41426032--41426161	29	4.5	28	76	17	97	29	3	2	64	1.23
41426085--41426162	20	4.1	19	73	18	72	29	1	1	67	1.06
41426032--41426162	30	4.5	28	76	16	124	29	3	2	64	1.23
41426080--41426155	37	2.0	40	84	7	104	31	2	1	64	1.15
41426091--41426161	9	7.4	10	78	10	69	28	1	1	69	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161