genome.fa.s22.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  35  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10711678--10711758	41	2.0	42	82	2	101	49	9	6	34	1.61
10723191--10723216	12	2.2	12	100	0	52	0	7	15	76	0.99
10723715--10723787	37	2.0	37	97	0	137	36	28	20	13	1.91
10727491--10727539	22	2.2	22	92	0	80	18	18	55	8	1.67
10727888--10728244	44	7.8	44	79	8	340	31	21	14	33	1.93
10727903--10728244	88	3.7	90	80	5	384	30	21	14	32	1.94
10728275--10728649	44	8.3	45	75	7	190	30	18	16	34	1.93
10728240--10728515	140	2.0	135	80	6	304	30	19	16	33	1.94
10728437--10728644	88	2.4	88	84	1	265	31	19	16	32	1.94
10737063--10737091	5	6.0	5	92	8	51	0	0	37	62	0.96
10738204--10738255	27	1.9	26	84	7	68	53	0	11	34	1.37
10738400--10738464	12	5.7	11	72	13	51	63	0	12	24	1.29
10738474--10738675	22	9.2	20	70	22	122	62	1	12	23	1.40
10738396--10738712	128	2.4	132	81	11	339	61	1	13	23	1.39
10738534--10738610	28	2.7	27	79	16	86	58	2	12	25	1.48
10738534--10738723	17	11.2	17	69	20	62	60	2	13	23	1.44
10738630--10738681	27	1.9	27	84	7	70	63	1	11	23	1.37
10738641--10738722	12	7.3	11	69	20	62	59	0	17	23	1.37
10738875--10738915	17	2.4	17	80	19	50	53	0	12	34	1.38
10738933--10738981	11	4.5	11	85	7	64	53	2	18	26	1.56
10738933--10738992	5	10.8	5	77	19	57	51	1	20	26	1.56
10738930--10738974	23	2.0	23	95	0	81	48	2	17	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10738933--10738992	28	2.1	28	87	6	86	51	1	20	26	1.56
10739053--10739106	21	2.6	21	74	8	56	61	0	12	25	1.32
10739068--10739160	33	2.8	33	81	1	116	58	0	13	27	1.37
10739098--10739152	12	4.9	11	80	8	58	52	0	18	29	1.45
10744983--10745019	19	2.0	18	89	5	56	27	5	24	43	1.76
10750220--10750348	67	1.9	67	96	0	240	28	32	17	20	1.96
10750478--10750586	57	1.9	57	88	3	166	24	27	18	29	1.98
10754879--10754918	14	2.9	14	84	0	53	32	7	17	42	1.77
10754887--10754953	34	1.9	35	84	3	91	32	10	11	44	1.75
10754902--10754941	20	2.0	20	85	0	53	27	12	12	47	1.77
10764805--10764935	66	2.0	66	92	0	217	32	11	20	35	1.89
10764931--10765007	21	3.6	21	66	3	64	32	25	11	29	1.91
10764917--10765004	43	2.0	43	97	0	167	34	25	10	30	1.89
10765219--10765252	16	2.1	16	89	10	52	44	0	5	50	1.26
10765325--10765371	16	3.0	16	78	12	53	46	0	2	51	1.13
10765325--10765371	15	3.0	15	81	12	51	46	0	2	51	1.13
10765432--10765466	18	2.0	17	88	5	52	45	0	0	54	0.99
10765630--10765719	45	2.0	44	82	2	108	34	27	6	31	1.83
10765708--10765747	16	2.5	16	95	0	71	22	35	5	37	1.76
10766811--10766835	12	2.1	12	100	0	50	32	0	8	60	1.26
10772099--10772168	27	2.6	27	86	4	88	17	20	38	24	1.93
10775579--10775640	6	10.3	6	91	0	88	3	30	30	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10777265--10777306	16	2.7	15	89	7	66	57	2	0	40	1.12
10777343--10777424	38	2.2	38	97	0	155	39	2	3	54	1.31
10777458--10777579	60	2.0	60	85	3	165	54	14	0	30	1.47
10777620--10777991	22	16.9	22	72	16	274	53	13	0	31	1.45
10777573--10777857	49	6.1	49	79	13	314	52	14	0	32	1.47
10777572--10777872	137	2.2	137	100	0	602	52	14	0	31	1.47
10777806--10777991	41	4.5	41	70	18	116	54	12	0	31	1.42
10777912--10777993	19	4.1	19	79	11	83	53	13	0	32	1.40
10777755--10777992	83	2.8	83	70	16	207	54	13	0	31	1.45
10782809--10782993	101	1.8	101	84	5	257	30	25	17	26	1.97
10782807--10782999	51	3.8	50	77	7	194	30	26	16	26	1.97
10783046--10783079	10	3.1	11	87	12	52	8	20	0	70	1.13
10784110--10784137	14	2.0	14	100	0	56	35	0	0	64	0.94
10786647--10786702	21	2.7	21	91	0	85	28	7	33	30	1.84
10786815--10786866	27	1.9	27	84	7	70	57	3	0	38	1.17
10786828--10786867	19	2.1	19	86	9	55	57	2	0	40	1.12
10788919--10788953	6	5.7	6	86	6	52	37	0	62	0	0.95
10798029--10798055	2	13.5	2	100	0	54	51	48	0	0	1.00
10798711--10798739	12	2.3	13	94	5	51	79	0	20	0	0.74
10802708--10802844	42	3.2	42	85	5	141	32	27	16	24	1.96
10802689--10802844	43	3.6	42	83	4	170	31	28	16	23	1.96
10805416--10805468	19	2.8	19	79	0	70	30	32	24	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10813054--10813116	30	2.1	30	93	0	108	25	3	14	57	1.52
10819887--10819960	29	2.6	29	97	0	139	25	13	28	32	1.94
10821008--10821040	17	1.9	18	88	11	52	18	6	0	75	1.00
10824502--10824535	17	1.9	18	94	5	61	32	17	11	38	1.86
10829909--10829966	11	5.2	11	78	2	62	24	32	1	41	1.65
10829909--10829963	22	2.4	23	84	6	76	25	30	1	41	1.66
10829945--10830043	51	1.9	51	84	11	132	28	23	3	45	1.67
10831935--10832504	126	4.5	125	88	2	820	29	22	17	30	1.96
10832620--10832657	9	4.2	9	83	12	51	57	23	0	18	1.40
10832620--10832657	18	2.1	18	95	0	67	57	23	0	18	1.40
10833450--10833474	13	1.9	13	100	0	50	12	0	0	88	0.53
10833497--10833522	6	4.3	6	100	0	52	19	0	0	80	0.71
10833455--10833541	40	2.1	42	87	4	124	31	1	0	67	0.98
10836571--10836735	44	3.6	44	81	10	195	29	15	24	30	1.96
10836625--10836737	51	2.2	51	91	0	190	30	15	25	28	1.95
10840686--10840720	11	3.1	12	88	12	56	34	0	0	65	0.93
10840843--10840894	27	1.9	27	96	0	95	59	15	3	21	1.52
10843203--10843229	3	9.0	3	100	0	54	33	0	33	33	1.58
10847197--10847263	34	2.0	34	100	0	134	38	17	14	28	1.90
10848933--10848975	20	2.2	20	87	8	61	9	13	0	76	1.01
10848939--10848994	23	2.3	24	81	6	69	5	14	0	80	0.88
10848951--10848993	12	3.4	12	81	9	50	6	13	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10849107--10849183	26	3.0	25	83	9	102	14	25	1	58	1.44
10849270--10849317	20	2.4	20	85	0	60	8	16	6	68	1.35
10849291--10849335	21	2.1	21	91	4	72	4	17	11	66	1.38
10861267--10861377	54	2.1	54	91	0	177	35	11	14	38	1.83
10866445--10866484	13	3.1	13	88	0	62	45	7	17	30	1.76
10866699--10866723	11	2.3	11	100	0	50	16	0	48	36	1.46
10866851--10866893	21	2.1	20	82	4	50	46	2	2	48	1.27
10873641--10873712	19	3.8	19	98	0	135	16	26	25	31	1.96
10873603--10873712	38	2.9	38	86	0	139	18	22	25	33	1.96
10874418--10874491	23	3.2	23	72	14	80	47	18	12	21	1.81
10874416--10874539	48	2.6	48	91	3	189	50	19	9	20	1.76
10874443--10874516	25	3.0	25	68	24	68	50	20	8	21	1.74
10874416--10874525	23	4.7	22	68	17	71	49	20	9	20	1.76
10876684--10876769	36	2.4	36	78	7	93	51	1	3	44	1.26
10879891--10879920	14	2.1	15	93	6	53	0	6	3	90	0.56
10880468--10880496	15	2.0	15	93	6	51	62	0	0	37	0.96
10885854--10886056	46	4.3	48	88	7	265	35	14	21	28	1.92
10885788--10886056	98	2.7	98	93	0	457	34	14	22	28	1.93
10886020--10886165	37	4.0	37	93	1	242	36	16	21	24	1.94
10887143--10887394	126	2.0	126	86	2	353	30	15	22	31	1.94
10889783--10889823	19	2.2	18	86	8	55	43	7	2	46	1.44
10889783--10889829	18	2.5	19	86	6	60	48	6	2	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10889788--10889829	18	2.2	20	87	8	61	54	4	2	38	1.34
10889783--10889830	19	2.5	19	80	10	53	50	6	2	41	1.39
10889818--10889867	23	2.1	24	81	3	57	56	6	2	36	1.36
10899311--10899363	9	5.9	9	86	0	79	39	26	11	22	1.88
10899311--10899360	18	2.8	18	93	0	91	40	24	12	24	1.88
10899765--10899819	13	4.2	13	76	0	56	34	3	25	36	1.74
10902568--10902629	32	1.9	32	96	0	115	29	9	22	38	1.86
10903852--10903936	39	2.3	37	89	6	127	37	20	16	25	1.93
10903927--10903976	22	2.3	22	89	0	73	54	14	24	8	1.66
10905213--10905314	28	3.1	35	63	25	87	50	11	18	19	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161