genome.fa.s22.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  127  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40061740--40061769	5	6.0	5	100	0	60	80	0	20	0	0.72
40062025--40062075	26	1.9	27	88	4	77	15	3	39	41	1.66
40064743--40064828	33	2.6	31	74	16	84	47	11	4	36	1.61
40064967--40065068	38	2.6	39	77	13	120	1	27	0	70	0.98
40064994--40065070	10	8.0	10	76	13	63	2	25	0	71	0.99
40065127--40065184	27	2.1	27	83	0	71	20	29	29	20	1.98
40065224--40065261	20	1.9	20	88	0	58	7	2	10	78	1.04
40071475--40071549	39	1.9	39	100	0	150	25	10	33	30	1.90
40075472--40075514	16	2.7	17	89	7	56	32	23	2	41	1.67
40076449--40076499	22	2.3	22	90	6	77	50	19	0	29	1.48
40082693--40082756	32	2.0	32	96	0	119	32	21	15	29	1.95
40083968--40084006	15	2.6	15	83	0	51	15	0	30	53	1.42
40084163--40084203	7	6.0	7	91	2	66	17	0	39	43	1.49
40084235--40084627	125	3.1	124	87	4	531	36	16	17	29	1.92
40086942--40086998	25	2.3	23	81	18	71	54	1	0	43	1.10
40087389--40087431	18	2.4	18	84	0	59	44	9	25	20	1.81
40088017--40088041	7	3.6	7	100	0	50	60	12	0	28	1.32
40089188--40089257	30	2.3	30	90	0	113	37	2	25	34	1.71
40094203--40094243	21	2.0	21	90	0	64	36	19	21	21	1.95
40096678--40096709	15	2.1	15	100	0	64	43	6	6	43	1.54
40102333--40102390	22	2.6	22	81	7	64	41	17	5	36	1.72
40103271--40103326	28	2.0	27	82	3	67	26	28	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40107211--40107300	19	4.6	19	71	17	67	38	4	1	55	1.27
40107874--40107917	19	2.2	20	88	4	63	36	2	2	59	1.23
40107863--40107920	9	6.2	9	76	11	55	32	3	1	62	1.22
40107863--40107917	20	2.9	19	82	12	62	34	3	1	60	1.25
40110015--40110040	4	6.5	4	100	0	52	46	0	0	53	1.00
40113574--40113606	13	2.5	13	95	0	57	33	0	18	48	1.48
40122961--40123308	125	2.8	125	94	1	601	31	16	20	31	1.95
40124009--40124073	35	1.9	33	100	0	112	29	29	24	16	1.97
40126482--40126516	18	1.9	18	94	0	61	51	2	8	37	1.47
40126444--40126694	56	4.3	56	88	9	376	49	5	7	38	1.53
40126490--40126873	56	6.1	63	79	18	362	50	5	7	37	1.52
40126538--40126572	18	1.9	18	94	0	61	51	2	8	37	1.47
40126594--40126638	10	4.7	10	83	10	58	51	2	8	37	1.46
40126594--40126628	18	1.9	18	94	0	61	51	2	8	37	1.47
40126660--40126714	10	5.7	10	82	8	69	49	3	9	38	1.52
40126612--40126770	76	2.1	76	95	0	291	50	4	6	37	1.49
40126791--40126827	10	3.7	10	96	0	65	51	0	10	37	1.37
40126698--40126947	56	4.5	56	89	6	348	49	6	8	36	1.57
40126678--40126887	113	1.9	113	94	2	377	51	4	7	35	1.51
40126849--40126883	18	1.9	18	94	0	61	51	2	8	37	1.47
40126678--40126947	113	2.4	112	87	6	370	49	5	8	36	1.57
40126739--40126974	55	4.2	55	82	11	225	47	5	9	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40126970--40127046	18	4.7	18	68	21	69	28	0	24	46	1.53
40126976--40128772	29	65.8	29	73	17	1027	26	0	27	45	1.55
40126970--40127377	47	8.2	47	74	14	356	25	0	26	47	1.52
40126976--40128819	76	23.3	76	83	12	1473	26	0	27	45	1.55
40127023--40128819	58	32.9	58	76	18	1520	26	0	27	45	1.55
40127085--40127122	18	2.1	18	95	0	67	28	0	23	47	1.52
40127161--40127198	18	2.1	18	95	0	67	28	0	23	47	1.52
40127237--40127274	18	2.1	18	95	0	67	28	0	23	47	1.52
40127313--40127350	18	2.1	18	95	0	67	28	0	23	47	1.52
40127344--40128813	82	17.7	83	79	12	787	27	0	26	45	1.56
40127689--40127799	40	3.1	38	73	25	114	30	0	24	45	1.54
40127830--40127872	18	2.4	18	96	0	77	30	0	23	46	1.52
40127965--40128049	23	3.6	23	77	16	93	23	0	29	47	1.52
40127971--40128445	47	9.1	47	69	20	238	25	0	28	46	1.55
40128018--40128090	35	2.1	35	94	0	128	21	0	32	45	1.53
40128047--40128131	23	3.6	23	77	16	93	23	0	29	47	1.52
40128100--40128172	35	2.1	35	94	0	128	21	0	32	45	1.53
40128129--40128213	23	3.6	23	77	16	93	23	0	29	47	1.52
40128182--40128254	35	2.1	35	94	0	128	21	0	32	45	1.53
40128211--40128295	23	3.6	23	77	16	93	23	0	29	47	1.52
40128264--40128336	35	2.1	35	94	0	128	21	0	32	45	1.53
40128379--40128416	18	2.1	18	90	0	58	31	0	23	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40128422--40128568	47	3.1	47	87	1	206	29	1	22	46	1.60
40128632--40128716	23	3.6	23	77	16	93	23	0	29	47	1.52
40128685--40128757	35	2.1	35	94	0	128	21	0	32	45	1.53
40128714--40128798	23	3.6	23	77	16	93	23	0	29	47	1.52
40128720--40128836	47	2.5	47	94	0	198	28	0	24	47	1.53
40128797--40128880	36	2.3	36	89	0	132	30	0	19	50	1.48
40128876--40128939	25	2.5	26	84	2	94	37	14	1	46	1.53
40131149--40131202	19	2.8	19	88	2	81	66	0	1	31	1.02
40131230--40131273	21	2.0	22	86	4	63	45	0	29	25	1.54
40147140--40147183	21	2.1	21	82	0	52	18	36	25	20	1.95
40147857--40147908	15	3.5	15	69	10	52	50	7	0	42	1.31
40147853--40147910	30	1.9	30	92	0	98	48	8	0	43	1.34
40160595--40160642	17	3.1	14	78	21	51	68	6	2	22	1.23
40173349--40174072	369	2.0	369	94	0	1286	27	20	16	35	1.94
40178618--40178852	61	3.9	61	97	0	434	41	2	8	48	1.44
40181067--40181534	120	3.9	120	96	0	873	52	4	1	42	1.29
40182920--40183023	49	2.1	49	92	0	172	50	10	8	30	1.67
40185707--40185751	9	4.7	10	76	18	51	37	0	0	62	0.96
40187175--40187378	113	1.8	113	97	0	390	45	2	6	45	1.44
40187847--40187905	12	4.9	12	91	0	100	62	23	5	8	1.43
40187847--40187905	24	2.5	24	100	0	118	62	23	5	8	1.43
40187848--40187984	68	2.1	67	84	6	181	58	20	6	14	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40187847--40187996	23	6.5	23	80	8	135	58	20	6	14	1.58
40187872--40187996	45	2.7	46	79	10	148	57	20	7	15	1.61
40189077--40189125	21	2.7	18	77	22	57	65	10	8	16	1.46
40190064--40190114	21	2.4	22	77	9	61	49	1	5	43	1.38
40190064--40190109	22	2.1	23	84	8	60	50	2	6	41	1.40
40190539--40190631	32	2.8	32	78	15	84	53	1	1	44	1.14
40190564--40190631	5	14.2	5	77	20	74	58	0	0	41	0.98
40190931--40190991	31	2.0	31	86	0	86	29	6	6	57	1.49
40192558--40192598	20	2.2	19	86	8	57	17	19	7	56	1.64
40192897--40192932	2	18.0	2	94	0	63	47	0	52	0	1.00
40194425--40194457	16	2.0	17	88	5	50	66	12	3	18	1.36
40202149--40202201	26	2.0	26	85	7	72	22	5	9	62	1.47
40207833--40207877	22	2.0	22	95	0	81	24	15	8	51	1.72
40212014--40212053	19	2.2	18	86	4	53	22	0	2	75	0.93
40212006--40212059	25	2.2	24	80	3	63	24	3	1	70	1.13
40213866--40213969	49	2.1	49	89	0	154	50	10	8	29	1.66
40216644--40216688	9	4.8	9	91	5	63	37	0	0	62	0.96
40217416--40217453	13	3.0	13	81	18	53	44	15	0	39	1.47
40218076--40218118	20	2.0	20	86	8	59	62	4	13	18	1.48
40220228--40220279	20	2.6	20	75	6	52	25	3	1	69	1.16
40223222--40223267	21	2.2	21	92	0	74	15	32	26	26	1.95
40226688--40226857	21	8.1	21	69	8	78	45	17	19	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40226688--40226837	42	3.6	42	80	3	167	46	17	19	17	1.85
40226917--40226981	24	2.7	24	90	0	94	24	29	4	41	1.75
40232590--40232614	8	3.1	8	100	0	50	88	0	0	12	0.53
40244797--40244877	29	2.9	29	81	5	103	55	13	6	24	1.61
40250087--40250144	16	3.7	15	77	11	53	43	1	0	55	1.10
40250120--40250170	21	2.5	20	75	9	59	33	0	0	66	0.92
40251845--40251878	16	2.1	17	88	5	52	50	2	11	35	1.54
40254290--40254330	19	2.2	19	86	0	55	43	14	0	41	1.45
40255699--40255812	57	2.0	58	84	8	153	48	7	20	24	1.74
40258018--40258067	18	2.7	19	81	9	59	64	2	2	32	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161