genome.fa.s22.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  29  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9061425--9061809	44	8.6	44	71	12	171	26	19	24	29	1.98
9061291--9061505	88	2.5	87	79	3	236	31	21	22	24	1.98
9061464--9061764	46	6.7	46	74	13	223	27	19	24	28	1.98
9061469--9061942	88	5.3	87	72	11	275	28	19	23	28	1.98
9061290--9061891	224	2.7	221	81	8	774	29	19	23	27	1.98
9061513--9061965	178	2.6	174	83	5	511	28	19	23	28	1.98
9061601--9061893	134	2.2	129	79	7	288	29	19	23	27	1.98
9061933--9062336	44	9.2	44	78	4	395	30	21	24	23	1.99
9061961--9062300	131	2.6	131	96	0	608	31	22	23	23	1.99
9061933--9062337	175	2.3	175	83	2	474	30	21	24	23	1.99
9062737--9062763	14	1.9	14	100	0	54	22	3	0	74	0.98
9063526--9063606	3	26.0	3	75	16	67	32	3	2	61	1.26
9072380--9072423	8	5.6	8	91	5	72	25	2	0	72	0.96
9076222--9076261	13	3.1	13	92	0	62	30	32	7	30	1.85
9077959--9078016	28	2.1	28	83	6	73	62	1	1	34	1.16
9083143--9083171	13	2.1	14	93	6	51	34	0	0	65	0.93
9098151--9098357	106	2.0	106	86	3	292	43	15	15	24	1.87
9103898--9103962	30	2.2	30	86	10	89	36	4	3	55	1.36
9126769--9126805	20	1.9	20	88	5	58	48	0	2	48	1.15
9127156--9127204	26	1.9	26	83	4	64	18	10	10	61	1.55
9127712--9127753	21	2.0	22	90	4	68	30	2	7	59	1.37
9130644--9130916	43	6.3	43	85	0	330	31	29	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9133477--9133502	13	2.0	13	100	0	52	53	0	15	30	1.42
9135549--9135605	21	2.6	22	79	17	66	35	31	0	33	1.58
9135569--9135616	21	2.3	21	82	10	62	29	37	2	31	1.69
9135664--9135711	22	2.2	21	77	3	51	47	29	0	22	1.51
9136139--9136299	73	2.2	73	91	2	252	29	26	19	24	1.98
9136212--9136526	113	2.8	112	88	2	477	27	26	20	26	1.99
9136004--9136412	187	2.2	185	89	1	613	26	27	19	26	1.99
9136436--9136587	73	2.1	72	86	4	209	27	21	20	30	1.98
9137284--9137707	125	3.4	124	90	2	636	29	17	23	29	1.97
9140873--9140994	21	5.8	21	75	12	115	27	3	24	44	1.69
9140873--9140999	43	3.0	42	82	11	152	27	3	25	44	1.69
9140876--9140999	64	2.0	63	82	7	153	28	3	25	42	1.70
9141550--9141592	18	2.4	18	84	0	59	46	9	27	16	1.77
9142239--9142264	7	3.7	7	100	0	52	57	15	0	26	1.38
9142433--9142470	20	1.9	20	84	10	51	55	7	2	34	1.43
9144199--9144224	7	3.7	7	100	0	52	57	15	0	26	1.38
9144393--9144430	20	1.9	20	84	10	51	55	7	2	34	1.43
9145366--9145465	51	2.0	51	86	4	139	45	3	26	26	1.68
9145424--9145479	11	5.0	11	76	20	62	42	1	30	25	1.65
9145423--9145479	22	2.5	22	84	15	73	42	1	31	24	1.65
9146943--9147132	102	1.9	102	84	2	256	46	4	6	43	1.48
9147688--9147717	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9157130--9157200	36	2.0	36	97	0	133	52	30	7	9	1.61
9158945--9159005	3	21.0	3	89	3	81	31	4	0	63	1.15
9176246--9176278	2	16.5	2	100	0	66	51	0	0	48	1.00
9187130--9187199	26	2.7	26	82	2	88	15	24	22	37	1.93
9187128--9187273	25	5.8	25	70	10	93	19	23	21	35	1.96
9189752--9189809	25	2.3	26	82	8	75	48	27	13	10	1.75
9192886--9192921	17	2.1	17	90	10	56	38	11	0	50	1.38
9195158--9195222	32	2.0	32	96	0	121	27	12	29	30	1.93
9196928--9196976	24	2.0	24	100	0	98	48	4	8	38	1.52
9208776--9208810	18	1.9	18	88	0	52	45	22	5	25	1.74
9218221--9218275	18	3.1	17	80	14	58	43	0	1	54	1.10
9225053--9225106	25	2.1	24	78	21	65	51	9	1	37	1.45
9225055--9225106	26	2.0	27	88	11	81	53	7	1	36	1.41
9227160--9227227	6	12.4	5	82	13	57	22	4	2	70	1.18
9227161--9227190	9	3.2	9	95	4	51	20	0	0	80	0.72
9231317--9231720	44	9.0	45	68	9	155	31	20	18	29	1.96
9231258--9231789	179	3.0	178	86	1	701	31	20	18	29	1.96
9231267--9231734	90	5.2	91	70	7	321	31	19	18	29	1.96
9233404--9233463	6	10.5	6	85	10	54	11	0	20	68	1.20
9233426--9233460	3	11.7	3	93	0	61	2	0	28	68	1.04
9234514--9234573	27	2.2	27	82	5	68	43	3	1	51	1.28
9239783--9239861	27	2.9	27	100	0	158	27	22	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9241762--9241886	18	6.4	20	70	9	80	64	3	6	25	1.32
9263211--9263373	54	3.1	54	81	6	217	31	24	14	30	1.94
9265956--9266012	16	3.4	16	69	21	53	54	12	1	31	1.48
9265958--9266038	35	2.3	35	95	0	144	48	13	2	35	1.56
9266862--9266906	22	2.0	22	86	0	63	60	4	8	26	1.46
9267870--9268047	38	4.8	36	76	7	140	57	3	6	32	1.43
9267855--9268079	38	5.9	36	73	9	137	57	3	6	32	1.42
9272661--9272725	30	2.2	30	97	0	121	58	15	3	23	1.51
9272806--9272848	22	2.0	21	86	4	59	74	9	4	11	1.20
9275891--9275927	18	2.1	18	90	10	58	29	16	0	54	1.43
9276003--9276028	2	13.0	2	100	0	52	50	0	0	50	1.00
9287369--9287724	44	8.0	44	73	7	252	30	17	24	26	1.97
9287414--9287724	89	3.5	89	85	5	428	30	18	25	26	1.97
9289461--9289497	18	2.1	18	90	10	58	29	16	0	54	1.43
9291393--9291442	24	2.2	23	89	7	75	34	4	6	56	1.43
9302422--9302545	61	2.0	61	84	3	160	36	16	16	29	1.92
9306147--9306197	19	2.5	20	72	15	52	62	1	1	33	1.17
9312399--9312440	18	2.3	18	84	8	50	21	7	0	71	1.09
9312692--9312727	13	2.8	13	91	0	54	47	2	5	44	1.41
9323825--9324839	102	10.0	102	99	0	1994	33	16	16	33	1.92
9327889--9327989	12	8.2	12	71	22	66	23	0	4	70	1.13
9327889--9327977	4	22.8	4	72	19	64	24	1	4	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9328012--9328054	19	2.2	20	80	12	54	20	6	2	69	1.23
9328120--9328160	18	2.3	18	82	0	55	7	9	2	80	0.99
9331562--9331591	14	2.1	14	100	0	60	26	26	0	46	1.53
9331659--9331774	61	1.9	58	87	5	169	51	4	3	40	1.38
9331717--9331852	72	1.9	71	80	11	161	52	2	3	40	1.34
9331816--9331856	20	2.1	19	86	4	55	53	0	0	46	1.00
9334869--9334964	41	2.4	41	89	1	140	39	9	25	26	1.85
9337397--9337490	39	2.4	38	84	5	109	50	8	4	37	1.53
9338802--9338898	49	2.0	48	89	2	149	41	22	14	21	1.89
9339107--9339163	19	3.1	19	76	19	75	45	14	12	28	1.80
9339094--9339163	36	1.9	36	97	0	131	45	12	12	28	1.79
9339094--9339154	17	3.5	17	77	16	70	47	11	13	27	1.77
9344201--9344264	17	3.6	17	78	15	76	46	12	12	28	1.78
9344217--9344273	19	3.1	19	76	19	75	45	14	12	28	1.80
9344201--9344273	36	2.0	36	97	0	137	45	13	12	28	1.80
9346387--9346474	44	2.0	44	91	4	142	36	19	9	35	1.83
9346770--9346809	14	2.9	14	84	0	62	35	0	0	65	0.93
9351620--9351652	17	1.9	17	93	0	57	18	3	24	54	1.57
9352398--9352583	46	4.0	46	92	0	300	33	8	28	29	1.86
9352986--9353765	389	2.0	389	100	0	1560	31	13	20	34	1.91
9357878--9358039	41	4.0	41	93	1	254	28	20	28	22	1.99
9361143--9361183	3	13.3	3	89	5	64	29	2	2	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9377283--9377323	20	2.0	22	85	9	59	36	9	9	43	1.71
9377398--9377422	12	2.1	12	100	0	50	36	0	16	48	1.46
9389589--9389618	12	2.4	13	94	5	53	26	23	3	46	1.68
9390820--9390865	17	2.7	17	96	0	83	45	6	6	41	1.56
9391225--9391375	66	2.3	66	87	0	203	40	9	25	24	1.85
9392413--9392461	21	2.5	19	80	6	53	24	0	4	71	1.03
9392528--9392566	9	4.3	9	83	0	51	30	5	12	51	1.62
9395080--9395107	5	5.6	5	100	0	56	0	17	60	21	1.36
9406530--9406567	16	2.4	16	100	0	76	34	0	18	47	1.49
9411992--9412030	20	2.0	20	94	0	69	35	0	12	51	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161