genome.fa.s22.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  83  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26270484--26270637	50	2.9	52	85	5	204	25	23	31	20	1.98
26273097--26273192	48	2.0	48	93	0	165	31	15	14	38	1.88
26275653--26275691	20	2.0	20	90	10	62	56	5	23	15	1.59
26282164--26282251	41	2.1	42	80	4	106	47	19	10	22	1.79
26290351--26290375	12	2.1	12	100	0	50	20	8	16	56	1.65
26291171--26291295	47	2.7	47	98	0	241	23	28	7	40	1.81
26293798--26293833	13	2.8	13	88	12	56	0	25	0	75	0.81
26294521--26294557	19	1.9	19	94	0	65	45	0	2	51	1.15
26296537--26296897	26	14.3	25	71	11	177	29	5	3	60	1.38
26296550--26296650	53	1.9	53	86	8	143	30	5	0	62	1.26
26296744--26296864	50	2.4	51	80	2	136	26	5	5	61	1.41
26298248--26298336	27	3.4	27	81	10	112	30	5	2	61	1.31
26298248--26298447	25	7.8	24	73	13	100	31	6	4	59	1.40
26298239--26298438	51	3.9	50	75	13	133	31	5	3	59	1.37
26298261--26298368	53	2.0	53	82	10	132	28	5	2	62	1.31
26298419--26298556	50	2.8	49	72	10	129	28	7	7	56	1.53
26298500--26298588	28	3.5	24	76	11	79	30	6	4	58	1.44
26298500--26298608	52	2.1	54	84	3	141	29	6	3	60	1.39
26299928--26299973	11	4.1	11	91	2	56	17	28	0	54	1.43
26301166--26301191	7	3.7	7	100	0	52	26	0	15	57	1.38
26302192--26302501	25	13.1	25	74	12	296	41	0	13	44	1.46
26302192--26302524	69	4.8	69	86	5	481	40	0	13	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26302192--26302501	94	3.3	98	75	12	292	41	0	13	44	1.46
26302549--26302995	23	19.8	23	76	11	408	47	24	0	27	1.56
26302580--26302911	113	3.0	113	88	4	451	49	24	0	26	1.53
26302549--26303113	67	8.4	66	83	6	522	46	24	0	27	1.58
26302573--26303102	44	11.9	44	77	12	353	46	25	0	26	1.58
26302912--26303079	21	7.9	21	78	12	173	42	30	1	26	1.63
26302549--26303102	90	6.2	89	76	10	390	46	25	0	27	1.58
26303070--26303113	23	1.9	23	100	0	88	52	18	4	25	1.64
26303109--26303350	115	2.1	116	91	4	391	38	11	7	42	1.68
26307915--26307974	3	20.0	3	100	0	120	33	0	0	66	0.92
26321595--26321781	51	3.7	50	80	6	198	29	27	17	25	1.98
26322235--26322329	31	3.1	31	90	0	154	47	12	7	32	1.69
26322811--26322836	2	13.0	2	100	0	52	50	0	0	50	1.00
26323180--26323225	19	2.3	20	88	3	67	19	10	34	34	1.87
26325380--26325475	31	3.1	31	93	3	165	46	13	8	31	1.73
26327462--26327658	98	2.0	98	98	0	385	31	23	11	32	1.91
26332047--26332119	36	2.0	36	100	0	146	30	19	13	36	1.90
26332338--26332530	51	3.8	50	78	6	201	29	26	17	26	1.97
26342862--26343192	51	6.5	50	76	5	290	30	24	15	29	1.95
26342853--26343192	102	3.4	102	85	2	425	30	24	15	29	1.95
26344682--26344750	20	3.3	20	67	25	61	46	14	5	33	1.68
26344702--26344773	23	3.3	23	67	25	73	45	18	6	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26344677--26344776	43	2.3	43	100	0	200	44	16	7	33	1.74
26346781--26346818	10	3.7	10	86	13	51	71	13	0	15	1.16
26348155--26348210	27	2.1	27	86	6	78	23	7	10	58	1.56
26348466--26348725	129	2.0	128	85	5	346	48	11	8	31	1.69
26353862--26353896	18	1.9	18	88	0	52	40	20	8	31	1.82
26353887--26353923	15	2.5	15	91	4	58	27	21	10	40	1.86
26375851--26375917	17	3.7	18	68	11	57	64	4	1	29	1.22
26375918--26375955	19	2.0	20	89	5	60	50	7	2	39	1.46
26378577--26378696	25	4.8	25	75	4	116	25	14	22	38	1.91
26378570--26378696	50	2.5	50	81	5	141	25	14	21	38	1.92
26403658--26403742	24	3.5	24	88	0	125	38	17	15	28	1.90
26403760--26403807	23	2.1	23	100	0	96	37	14	14	33	1.87
26404501--26404639	41	3.4	41	79	6	138	34	25	12	27	1.92
26404585--26404661	40	1.9	41	86	7	113	38	25	11	23	1.89
26404496--26404655	81	1.9	84	82	6	202	35	25	11	28	1.90
26404496--26404666	82	2.1	84	81	6	197	35	25	11	28	1.90
26407497--26407551	26	2.1	26	96	0	101	36	5	16	41	1.71
26410618--26410672	27	2.1	27	89	3	85	29	23	21	25	1.99
26413038--26413308	54	5.0	54	81	1	249	21	31	19	26	1.98
26413056--26413308	108	2.3	108	82	1	283	22	32	19	26	1.97
26414506--26414530	12	2.1	12	100	0	50	16	8	0	76	1.02
26419615--26419745	61	2.1	61	81	2	156	35	8	16	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26419842--26419996	41	3.8	39	79	16	154	28	19	21	30	1.97
26419858--26419996	41	3.4	41	94	0	242	30	18	20	30	1.97
26419858--26420043	41	4.5	41	87	2	241	28	18	23	29	1.98
26425951--26425998	24	2.0	23	84	11	62	72	0	16	10	1.10
26438457--26438523	5	12.8	5	96	1	107	17	2	0	79	0.86
26443676--26444804	566	2.0	562	92	1	1855	31	18	16	33	1.93
26448642--26448686	21	2.1	21	80	8	56	48	0	6	44	1.29
26448675--26448750	10	7.7	10	73	7	57	57	3	2	35	1.31
26448683--26448764	9	8.4	9	71	14	56	58	4	2	34	1.32
26448675--26448752	40	2.0	39	84	2	102	57	3	2	35	1.30
26448675--26448780	39	2.7	39	82	4	106	55	3	5	34	1.41
26449567--26449624	28	2.1	28	83	6	73	41	0	3	55	1.17
26449802--26449839	13	2.9	13	77	14	51	34	7	23	34	1.84
26456479--26456530	20	2.6	21	78	9	63	61	1	0	36	1.07
26463346--26463370	13	1.9	13	100	0	50	8	32	52	8	1.60
26466334--26466396	30	2.1	31	90	3	101	52	20	14	12	1.74
26467324--26467410	34	2.6	34	83	7	106	36	31	10	21	1.87
26479670--26479714	23	2.0	23	90	0	72	71	2	0	26	0.98
26479994--26480051	30	2.0	30	82	3	73	58	1	6	32	1.35
26480201--26480225	11	2.3	11	100	0	50	76	0	0	24	0.80
26480194--26480236	21	2.2	20	87	8	61	67	0	2	30	1.03
26480461--26480510	13	3.8	13	79	7	57	34	2	26	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26483042--26483079	13	2.8	13	85	14	51	7	10	0	81	0.87
26483906--26483962	29	2.0	29	89	6	89	68	5	1	24	1.20
26489932--26490043	46	2.4	46	86	5	147	31	10	9	48	1.71
26496592--26496687	46	2.1	46	94	0	165	34	10	10	44	1.73
26504186--26504336	27	5.6	26	80	4	115	26	16	28	28	1.97
26504186--26504311	54	2.3	54	82	8	148	26	16	28	28	1.97
26504213--26504362	55	2.8	54	81	6	160	27	15	30	27	1.96
26504186--26504341	82	1.9	81	81	3	188	26	16	28	28	1.96
26504213--26504362	27	5.5	27	81	3	113	27	15	30	27	1.96
26509642--26509707	34	1.9	34	93	0	114	22	3	27	46	1.66
26517601--26517644	19	2.2	19	84	8	52	25	11	2	61	1.41
26522017--26522049	16	1.9	18	88	11	52	60	3	0	36	1.12
26530366--26530422	26	2.2	26	87	0	78	35	19	5	40	1.74
26530366--26530436	26	2.7	26	82	0	70	35	18	7	39	1.78
26537681--26537724	21	2.1	21	86	0	61	27	11	25	36	1.90
26539692--26539722	16	2.0	15	93	6	53	41	12	6	38	1.69
26543714--26543750	17	2.1	17	90	5	56	35	5	29	29	1.80
26557268--26557343	38	2.0	38	97	0	143	51	3	15	28	1.62
26558171--26558201	14	2.2	14	94	0	53	12	0	9	77	0.99
26562247--26562281	18	1.9	18	88	0	52	5	28	34	31	1.81
26568094--26568136	3	14.0	3	81	13	52	34	2	0	62	1.08
26568094--26568132	14	2.8	14	96	0	69	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26568094--26568136	17	2.6	16	85	10	59	34	2	0	62	1.08
26568091--26568136	14	3.8	12	81	16	58	36	2	0	60	1.09
26568093--26568182	12	7.5	12	72	13	51	33	6	4	55	1.46
26570668--26570695	14	2.0	14	100	0	56	28	7	0	64	1.20
26572713--26572803	45	2.0	45	97	0	173	29	21	20	27	1.98
26574806--26574851	24	1.9	24	90	0	74	56	10	13	19	1.66
26587657--26587758	41	2.5	41	85	0	132	19	31	17	31	1.95
26589482--26589535	21	2.6	21	90	0	81	35	18	24	22	1.96
26590200--26590289	43	2.1	42	84	12	112	51	3	1	44	1.25
26590370--26590425	21	2.8	19	77	15	60	25	0	5	69	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161