genome.fa.s22.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  40  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12282267--12282354	45	2.0	45	88	4	133	23	17	25	34	1.96
12282396--12282442	23	2.0	22	84	15	60	42	0	21	36	1.53
12292802--12292857	21	2.8	19	87	10	85	37	19	10	32	1.86
12293224--12293279	21	2.8	19	87	10	85	37	19	10	32	1.86
12293652--12294038	44	8.8	44	83	2	454	30	25	14	29	1.95
12293622--12294037	89	4.7	88	81	2	458	30	25	14	30	1.95
12293624--12294035	133	3.1	133	91	1	650	29	25	14	30	1.95
12294004--12294585	88	6.6	87	89	1	804	25	26	23	24	2.00
12293621--12294430	264	3.1	264	80	2	736	27	25	19	27	1.99
12294009--12294584	44	13.1	44	66	4	228	25	26	22	25	2.00
12296654--12296680	12	2.2	12	100	0	54	44	7	29	18	1.77
12300674--12300698	12	2.1	12	100	0	50	76	0	8	16	1.02
12301864--12301915	21	2.5	19	77	17	50	34	1	3	59	1.27
12301845--12301935	45	2.1	42	85	6	119	35	5	5	53	1.47
12303859--12303914	21	2.8	19	84	10	76	35	19	12	32	1.89
12303870--12303913	21	2.1	21	95	0	79	38	15	9	36	1.80
12304520--12304604	20	4.2	20	72	10	68	22	4	4	68	1.27
12304569--12304604	10	3.5	10	85	7	54	19	2	0	77	0.88
12304744--12304965	87	2.5	84	81	11	227	35	10	18	35	1.85
12314378--12314819	218	2.0	218	85	3	584	30	19	12	37	1.89
12320048--12320102	21	2.8	19	83	8	58	36	9	16	38	1.80
12320067--12320125	21	2.6	24	84	10	72	37	8	15	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12330324--12330473	42	3.5	42	92	3	239	32	20	23	23	1.98
12331974--12332065	42	2.2	43	88	2	132	29	23	19	27	1.98
12337817--12338006	9	22.2	9	67	15	100	34	1	19	44	1.60
12337810--12337866	16	3.4	16	81	15	71	33	1	19	45	1.61
12338077--12338128	22	2.4	21	87	3	68	38	1	19	40	1.63
12338124--12338161	7	5.6	7	82	17	53	28	0	13	57	1.36
12338109--12338181	27	2.7	26	70	6	74	36	1	13	47	1.52
12338173--12338258	21	4.0	22	72	19	67	34	2	13	48	1.56
12338166--12338309	50	3.2	42	69	21	119	35	3	13	47	1.61
12338219--12338264	7	6.6	7	78	16	51	28	0	10	60	1.30
12338077--12338343	95	2.8	95	90	1	401	35	3	14	46	1.63
12338219--12338264	15	3.3	15	79	17	62	28	0	10	60	1.30
12338489--12338636	61	2.4	61	80	4	174	46	8	4	41	1.52
12338567--12338606	16	2.6	15	76	7	53	47	7	0	45	1.31
12338615--12338647	17	1.9	17	93	0	57	51	9	3	36	1.49
12341080--12341130	23	2.2	24	82	10	61	43	3	0	52	1.19
12341095--12341130	16	2.3	17	86	13	51	41	2	0	55	1.14
12342026--12342569	228	2.4	226	86	2	732	27	21	18	32	1.97
12341990--12342647	114	5.8	112	74	11	482	26	21	19	32	1.97
12342026--12342647	228	2.7	226	83	5	718	26	21	19	32	1.97
12346652--12346683	15	2.1	15	94	0	55	15	6	9	68	1.36
12347864--12347921	25	2.4	24	85	2	71	17	25	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12349256--12349286	15	2.1	15	93	0	53	22	0	0	77	0.77
12349529--12349596	23	3.2	23	64	20	65	30	17	5	45	1.72
12349523--12349621	41	2.4	41	89	3	146	36	17	4	42	1.68
12349713--12349752	21	1.9	21	89	0	62	40	2	0	57	1.12
12353196--12353221	13	2.0	13	100	0	52	38	23	23	15	1.92
12354545--12354598	5	10.8	5	79	15	58	85	0	14	0	0.61
12354547--12354599	23	2.2	24	90	6	81	84	0	15	0	0.61
12355867--12356179	44	7.1	43	66	16	194	24	24	25	25	2.00
12355855--12356419	88	6.5	88	89	2	682	27	23	24	24	2.00
12355853--12356485	88	7.3	86	89	2	449	28	23	24	24	2.00
12356348--12356483	43	3.2	43	64	12	107	28	22	23	25	1.99
12357932--12357963	3	10.7	3	100	0	64	31	0	0	68	0.90
12358208--12358275	23	3.2	23	64	20	65	30	17	5	45	1.72
12358202--12358300	41	2.4	41	89	3	146	36	17	4	42	1.68
12360984--12361049	12	5.3	13	75	17	61	43	0	3	53	1.16
12360991--12361047	17	3.5	17	75	15	50	42	0	1	56	1.10
12360983--12361050	23	2.8	25	80	15	79	44	0	2	52	1.16
12360972--12361149	62	2.7	64	75	18	163	42	1	5	51	1.31
12361911--12362155	6	41.3	6	87	2	262	0	35	0	64	0.97
12361911--12362155	9	27.6	9	86	2	262	0	35	0	64	0.97
12361997--12362155	15	10.8	15	85	8	121	0	32	0	67	0.91
12362263--12362321	30	2.0	30	100	0	118	16	16	8	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12370420--12370506	45	1.9	45	90	0	138	36	21	13	27	1.92
12370517--12370700	51	3.6	51	78	4	196	32	29	15	22	1.94
12370516--12370698	100	1.8	101	88	7	282	33	28	15	22	1.94
12373784--12373975	43	4.5	41	77	7	179	34	25	16	22	1.95
12373738--12373975	85	2.8	84	85	3	298	34	25	17	23	1.96
12378876--12379180	70	4.4	70	76	9	214	32	23	18	26	1.97
12379007--12379324	70	4.5	70	76	6	277	32	24	17	25	1.97
12379016--12379285	140	1.9	140	80	5	314	31	22	18	27	1.97
12378933--12379320	210	1.9	206	80	6	451	33	23	17	26	1.96
12379379--12379543	58	2.8	58	84	0	186	37	19	13	29	1.90
12383034--12383145	50	2.2	49	87	9	156	10	29	15	44	1.80
12383131--12383279	60	2.5	60	83	4	176	16	33	9	40	1.81
12383450--12383580	60	2.2	61	90	1	201	12	29	13	45	1.80
12389905--12389937	15	2.2	15	89	10	50	48	6	0	45	1.27
12400388--12400460	12	6.6	11	74	21	64	30	1	2	65	1.15
12400391--12400458	21	3.1	22	78	20	63	30	1	2	64	1.17
12402868--12402922	25	2.2	25	86	0	74	20	23	21	34	1.97
12408732--12408777	15	3.1	15	73	14	51	30	0	2	67	1.03
12418220--12418256	18	2.1	18	90	10	58	2	45	10	40	1.53
12420190--12420250	32	1.9	32	84	15	83	24	21	3	50	1.63
12424713--12424767	20	2.8	20	88	0	83	29	16	29	25	1.97
12425081--12425182	51	2.0	51	100	0	204	21	27	11	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12425453--12425482	15	2.0	15	93	0	51	16	0	0	83	0.65
12426954--12427016	24	2.6	24	82	5	74	36	4	41	17	1.71
12433425--12433716	152	1.9	152	95	0	530	35	10	23	30	1.88
12434364--12434426	25	2.5	25	84	0	90	22	19	23	34	1.96
12436634--12436688	24	2.3	24	90	0	83	12	32	34	20	1.90
12440662--12440695	16	2.1	17	94	5	61	35	17	5	41	1.74
12444687--12444752	3	22.0	3	87	0	96	31	3	3	62	1.26
12444687--12444760	9	7.8	10	78	14	61	31	2	2	63	1.22
12444961--12445020	29	2.0	30	80	6	68	38	16	5	40	1.71
12446201--12446239	18	2.2	18	86	9	53	56	10	0	33	1.33
12465254--12465440	51	3.7	50	85	2	239	26	13	25	34	1.93
12465256--12465458	102	2.0	102	86	1	282	26	14	25	33	1.94
12473439--12473497	29	2.0	29	100	0	118	37	16	13	32	1.88
12474575--12474750	93	1.9	93	96	0	325	30	15	20	33	1.93
12477760--12478023	132	2.0	132	99	0	519	37	19	18	25	1.94
12479838--12479901	25	2.6	25	100	0	128	37	23	26	12	1.90
12481351--12481393	21	2.0	21	86	0	59	37	13	11	37	1.82
12482303--12482347	18	2.5	18	92	0	72	13	11	20	55	1.68
12482408--12482868	107	4.3	107	92	1	798	24	6	24	44	1.77
12482647--12482705	22	2.7	22	75	14	61	18	5	22	54	1.63
12482753--12482841	23	4.0	22	72	17	69	16	7	23	51	1.71
12486899--12487043	47	3.1	47	72	16	158	44	2	3	49	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12486884--12487099	91	2.4	91	93	0	369	46	2	3	46	1.35
12486976--12487167	101	2.0	92	78	15	194	47	3	2	46	1.32
12486915--12487058	47	3.1	47	69	20	140	45	2	2	50	1.28
12487117--12487401	61	4.8	58	67	11	191	43	2	5	48	1.37
12487106--12487401	120	2.5	120	97	1	549	43	2	5	48	1.36
12487227--12487261	18	2.0	17	88	5	52	45	0	0	54	0.99
12487347--12487381	18	2.0	17	88	5	52	45	0	0	54	0.99
12487620--12487652	16	2.1	16	100	0	66	21	36	6	36	1.78
12502269--12502373	54	1.9	54	100	0	210	38	2	32	26	1.71
12502492--12502538	12	3.8	12	86	10	67	44	10	19	25	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161