genome.fa.s22.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  11  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3615819--3615969	55	2.8	54	82	4	169	28	28	15	27	1.96
3615819--3615997	55	3.3	54	75	18	147	27	29	15	27	1.96
3622794--3623076	38	7.4	38	85	4	147	37	26	19	17	1.93
3622827--3623097	38	7.1	38	89	1	418	37	25	20	17	1.94
3626512--3626714	40	5.1	40	78	8	193	25	27	21	26	2.00
3632045--3632371	117	2.8	117	90	2	514	21	8	24	45	1.79
3632879--3632955	32	2.4	32	82	8	86	29	0	42	27	1.56
3632899--3633018	32	3.7	32	73	17	95	30	2	45	22	1.66
3639816--3639860	18	2.5	18	92	0	72	37	11	22	28	1.88
3642874--3642934	24	2.5	24	81	5	70	18	11	32	37	1.86
3650002--3650143	69	2.1	69	94	0	248	32	16	18	33	1.93
3654615--3654692	32	2.4	34	84	4	97	34	2	5	57	1.34
3654646--3654694	25	2.0	25	83	0	62	34	0	6	59	1.22
3656793--3656830	8	4.6	8	90	3	58	13	0	57	28	1.36
3662040--3662089	20	2.5	19	81	15	57	32	22	34	12	1.90
3662305--3662345	21	2.0	21	100	0	82	43	24	4	26	1.74
3664712--3664746	18	1.9	18	88	0	52	25	2	28	42	1.69
3666893--3666940	9	5.4	9	80	11	55	66	4	0	29	1.10
3666900--3666954	27	2.0	29	85	7	78	67	5	0	27	1.12
3667109--3667149	17	2.4	16	84	11	55	78	2	2	17	0.98
3667620--3667668	14	2.9	17	71	22	50	48	0	6	44	1.27
3667617--3667655	14	2.8	14	85	11	53	48	0	7	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3668095--3668157	23	2.5	26	85	12	78	46	7	3	42	1.49
3671978--3672028	25	2.0	25	100	0	102	72	3	0	23	1.01
3672438--3672473	18	2.0	18	88	0	54	13	11	11	63	1.51
3675105--3675129	11	2.3	11	100	0	50	16	40	36	8	1.77
3676135--3676283	50	3.0	50	79	0	172	23	22	24	29	1.99
3676309--3677089	44	16.7	44	64	20	171	27	21	18	33	1.96
3676341--3676709	141	2.6	142	93	1	616	27	21	17	33	1.96
3676582--3676905	98	3.3	98	96	0	603	26	20	18	33	1.96
3676784--3677089	142	2.2	142	95	1	551	27	19	20	32	1.97
3676582--3676948	196	1.9	190	87	5	508	26	20	19	32	1.97
3678541--3678574	15	2.3	15	90	5	52	8	20	0	70	1.13
3679402--3679441	8	5.1	8	81	6	55	0	27	0	72	0.85
3679437--3679476	6	6.7	6	88	0	53	15	5	10	70	1.32
3685354--3685394	19	2.0	21	90	9	68	53	9	2	34	1.47
3685383--3685420	18	2.2	17	90	4	58	60	0	2	36	1.11
3686493--3686549	26	2.2	26	78	6	62	15	31	21	31	1.94
3687764--3688187	211	2.0	211	95	0	769	27	16	23	32	1.96
3689746--3689917	71	2.4	71	78	4	177	26	15	22	36	1.93
3689931--3690551	71	8.8	70	77	6	441	24	16	23	35	1.95
3689928--3690519	142	4.2	141	81	3	600	24	16	23	35	1.95
3689928--3690519	212	2.8	209	81	4	641	24	16	23	35	1.95
3689919--3690524	283	2.1	283	80	3	691	25	16	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3702499--3702598	50	2.0	50	100	0	200	38	0	12	50	1.40
3702576--3702617	20	2.2	19	83	12	50	42	2	11	42	1.54
3706269--3706321	26	2.0	26	88	0	79	18	20	35	24	1.95
3706295--3706390	43	2.3	41	80	10	104	25	14	25	35	1.94
3708462--3708486	3	8.3	3	100	0	50	32	0	0	68	0.90
3710080--3710203	65	1.9	65	95	3	223	47	18	9	24	1.78
3718728--3718851	50	2.5	50	85	0	167	27	23	29	20	1.99
3719123--3719171	20	2.5	20	78	15	57	57	8	24	10	1.59
3722235--3722339	49	2.1	49	92	0	174	51	7	24	16	1.70
3740686--3740920	42	5.6	42	85	2	310	33	18	17	31	1.94
3740681--3740957	84	3.3	84	88	1	378	32	18	17	31	1.94
3740684--3740957	42	6.6	41	82	2	289	32	18	17	31	1.94
3740684--3740918	126	1.9	126	89	1	364	32	18	17	31	1.94
3748749--3748978	117	2.0	117	94	0	406	31	12	16	39	1.86
3748960--3749104	42	3.5	42	83	4	186	31	19	18	31	1.96
3759553--3759709	41	3.9	41	84	4	192	36	21	13	28	1.91
3759657--3759737	40	2.0	40	83	9	103	37	23	12	27	1.90
3761819--3761850	15	2.1	15	94	0	55	15	6	9	68	1.36
3768586--3768629	18	2.4	19	88	3	63	27	20	18	34	1.96
3780107--3780153	17	2.8	16	84	9	58	27	0	14	57	1.38
3780892--3780984	46	2.0	46	93	4	161	34	9	25	30	1.88
3796608--3796777	68	2.5	67	79	6	173	41	6	17	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3802519--3802573	27	2.0	27	89	0	83	16	18	34	30	1.93
3811490--3812520	49	21.2	49	97	1	1880	32	6	29	31	1.83
3812638--3812716	37	2.1	37	88	0	113	24	18	30	26	1.98
3822384--3822430	24	2.0	24	86	0	67	25	21	23	29	1.99
3833446--3833491	2	23.0	2	86	0	65	0	56	0	43	0.99
3833437--3833488	24	2.2	24	92	0	86	0	57	0	42	0.98
3833438--3833491	28	1.9	28	96	0	99	0	57	0	42	0.98
3836727--3836752	9	2.9	9	100	0	52	23	0	23	53	1.46
3842432--3842547	27	4.3	26	87	4	169	43	19	18	18	1.88
3842432--3842547	53	2.2	54	89	4	182	43	19	18	18	1.88
3844871--3844914	21	2.1	21	87	8	63	29	18	15	36	1.92
3848129--3848220	40	2.3	40	88	1	132	22	20	29	27	1.99
3851390--3851439	20	2.5	20	90	0	73	50	2	12	36	1.51
3855448--3855474	12	2.2	12	100	0	54	29	14	22	33	1.94
3857135--3857399	40	6.5	41	90	2	428	23	27	20	28	1.99
3857135--3857399	81	3.3	81	94	0	476	23	27	20	28	1.99
3865138--3865402	40	6.5	41	93	2	464	23	28	20	27	1.99
3865138--3865402	81	3.3	81	98	0	512	23	28	20	27	1.99
3872685--3872801	58	2.0	58	98	0	225	42	17	1	38	1.59
3872703--3872794	28	3.2	29	63	17	73	42	16	2	39	1.60
3873506--3873693	50	3.7	50	79	1	205	29	24	18	27	1.98
3873512--3873693	101	1.8	101	85	0	256	29	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3876879--3877031	73	2.1	73	100	0	306	37	14	16	31	1.89
3904176--3904215	21	1.9	21	85	10	55	37	7	0	55	1.29
3912446--3912476	16	1.9	16	93	0	53	45	22	22	9	1.81
3915349--3915409	22	2.9	21	85	4	86	24	18	26	31	1.97
3915765--3915796	13	2.4	14	85	15	50	31	0	0	68	0.90
3924791--3924816	11	2.4	11	100	0	52	38	7	0	53	1.30
3924783--3924905	40	3.1	40	87	5	187	34	2	0	62	1.14
3931248--3931397	55	2.8	54	80	4	149	26	15	29	28	1.96
3931220--3931397	27	6.6	27	77	6	146	25	15	28	30	1.96
3931221--3931376	82	1.9	81	81	6	190	25	16	28	30	1.96
3939282--3939459	27	6.6	27	83	3	205	26	15	28	29	1.96
3939283--3939438	82	1.9	81	88	3	233	26	15	28	29	1.96
3939279--3939459	82	2.2	81	83	2	229	27	15	27	29	1.96
3941482--3941556	37	2.0	37	100	0	150	46	16	8	29	1.75
3941844--3941879	18	1.9	19	88	5	56	47	16	11	25	1.79
3944467--3944739	136	2.0	136	87	2	397	23	25	16	34	1.95
3955395--3955453	29	1.9	30	83	10	75	30	5	13	50	1.63
3955392--3955453	32	2.0	30	84	12	81	30	4	12	51	1.61
3957396--3957579	79	2.3	81	82	11	222	25	27	22	25	2.00
3957396--3957579	40	4.6	41	83	12	199	25	27	22	25	2.00
3959860--3959904	20	2.2	20	84	7	56	51	11	6	31	1.63
3963062--3963130	26	2.7	26	81	4	77	20	23	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3965836--3965941	53	2.0	54	86	1	151	35	13	21	29	1.91
3967179--3967394	30	7.2	30	79	10	151	38	14	26	20	1.91
3967179--3967279	30	3.3	31	90	8	154	37	11	25	24	1.90
3967267--3967338	29	2.5	29	93	0	117	43	13	29	13	1.83
3968810--3968872	27	2.3	27	88	2	90	33	15	20	30	1.94
3969007--3969058	27	1.9	27	88	0	77	42	7	25	25	1.81
3973978--3974092	57	2.0	58	86	1	160	45	6	18	29	1.75
3976749--3976792	13	3.4	13	87	6	54	45	0	25	29	1.54
3976759--3976803	13	3.5	13	87	0	54	44	2	22	31	1.65
3976749--3976803	26	2.1	26	82	0	65	45	1	21	30	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161