genome.fa.s22.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  30  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9418520--9418549	9	3.3	9	90	0	51	20	0	23	56	1.42
9418520--9418557	18	2.1	18	95	0	67	18	0	23	57	1.40
9418683--9419237	126	4.4	126	85	4	723	29	16	23	30	1.96
9419911--9420743	416	2.0	416	94	0	1470	29	20	24	25	1.99
9422827--9423557	43	17.1	42	73	12	442	27	1	24	45	1.62
9422830--9423214	64	6.1	62	80	10	336	27	1	25	45	1.60
9423169--9423230	29	2.1	29	82	5	72	27	1	22	48	1.60
9423163--9423265	51	2.0	50	92	1	170	27	0	22	49	1.56
9423184--9423243	29	2.1	29	84	6	77	26	1	20	51	1.56
9423213--9423540	64	5.2	65	81	7	361	28	2	23	45	1.64
9423438--9423467	15	2.0	15	93	0	51	20	0	30	50	1.49
9423370--9423532	81	2.0	80	86	3	229	26	1	25	46	1.60
9423527--9423673	38	3.7	38	75	12	152	25	0	23	49	1.55
9423055--9423873	43	19.1	43	73	11	481	27	1	24	46	1.62
9423486--9423731	81	3.0	81	83	3	298	28	0	23	47	1.57
9423599--9423676	30	2.6	30	75	15	72	28	0	24	47	1.52
9422840--9423844	64	15.8	64	72	16	307	27	1	24	46	1.61
9422827--9423844	21	48.0	21	71	11	535	27	1	24	46	1.61
9423896--9423924	8	3.8	8	95	4	51	51	0	0	48	1.00
9424416--9424458	18	2.4	18	84	0	59	46	9	27	16	1.77
9426251--9426350	51	2.0	50	84	7	130	44	3	27	26	1.69
9426169--9426548	190	2.0	190	100	0	760	41	7	19	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9426441--9426540	51	2.0	50	84	7	130	44	3	27	26	1.69
9426500--9426586	11	7.8	12	76	15	89	42	1	31	25	1.62
9426502--9426586	33	2.5	35	83	12	108	42	1	31	24	1.62
9426771--9426848	40	2.0	40	81	0	93	23	28	25	23	1.99
9427042--9427110	34	2.0	34	100	0	138	20	23	8	47	1.77
9435288--9435357	37	1.9	36	91	2	113	31	4	8	55	1.49
9435351--9435403	27	2.0	27	81	7	63	41	1	3	52	1.30
9435722--9435766	23	2.0	23	86	8	65	48	0	0	51	1.00
9439701--9439747	24	1.9	25	82	4	60	55	0	4	40	1.19
9443431--9443473	19	2.2	20	84	12	63	32	18	0	48	1.48
9443602--9443693	38	2.4	38	85	5	116	27	28	21	22	1.99
9444604--9444688	10	8.3	10	74	5	62	3	18	4	72	1.16
9444642--9444671	15	1.9	16	93	6	53	10	13	10	66	1.44
9444837--9444891	3	19.0	3	75	14	53	61	3	0	34	1.13
9445131--9445187	29	2.0	29	89	6	89	52	3	0	43	1.18
9445141--9445214	37	2.0	36	82	7	87	58	2	0	39	1.13
9448939--9449013	37	2.0	37	94	0	132	21	13	20	45	1.84
9450795--9450865	35	2.0	35	100	0	142	33	25	21	19	1.97
9454742--9454785	21	2.1	21	100	0	88	27	9	9	54	1.62
9458630--9458682	16	3.6	16	71	23	53	54	0	7	37	1.29
9459099--9459167	30	2.3	30	82	7	77	43	4	20	31	1.71
9460948--9460992	19	2.5	17	82	10	54	35	0	17	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9471186--9471224	18	2.2	18	86	9	53	15	0	10	74	1.07
9474273--9474322	22	2.3	22	83	12	68	52	0	0	48	1.00
9477121--9477198	23	3.2	24	74	5	77	20	30	19	29	1.97
9480749--9480789	20	2.0	20	100	0	82	51	9	24	14	1.72
9484913--9484973	30	2.0	30	100	0	122	26	6	13	54	1.63
9492509--9492559	25	2.0	25	96	0	93	25	5	37	31	1.80
9494047--9494084	20	1.9	20	84	10	51	60	10	13	15	1.59
9497586--9497621	19	1.9	18	88	5	54	30	19	11	38	1.86
9503567--9503653	43	2.0	43	90	0	138	16	10	34	39	1.82
9508012--9508064	24	2.2	24	93	0	88	35	35	7	20	1.81
9511372--9511425	22	2.4	22	73	14	56	29	1	20	48	1.60
9512759--9512921	69	2.4	69	84	2	211	33	17	26	22	1.96
9512759--9512958	69	2.9	69	81	4	199	32	19	27	21	1.97
9516843--9516905	30	2.1	30	96	0	117	28	4	11	55	1.55
9517029--9517062	12	2.8	12	90	0	50	67	0	0	32	0.91
9517345--9517396	21	2.5	21	100	0	104	25	13	9	51	1.71
9526980--9527030	3	17.0	3	95	0	93	66	0	1	31	1.03
9527306--9527339	17	2.0	17	88	0	50	17	0	5	76	0.98
9531888--9531928	17	2.4	17	83	0	55	34	0	2	63	1.08
9531908--9531976	29	2.3	30	82	7	86	47	0	1	50	1.09
9537024--9537072	24	2.0	25	84	8	64	71	8	2	18	1.21
9538586--9538633	24	2.0	23	84	8	60	41	0	8	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9544174--9544283	37	2.8	39	75	9	116	22	16	25	35	1.95
9545339--9545373	17	2.0	17	88	5	52	40	8	11	40	1.72
9553733--9553767	17	2.1	17	100	0	70	22	17	20	40	1.92
9553908--9554069	82	2.0	81	80	9	186	48	4	4	43	1.42
9558299--9558331	16	2.1	16	88	11	50	69	3	0	27	1.03
9558299--9558331	15	2.1	16	88	5	50	69	3	0	27	1.03
9558329--9558430	30	3.4	30	83	2	134	29	20	3	46	1.69
9558694--9558743	10	5.2	10	80	7	59	70	0	30	0	0.88
9558697--9558739	19	2.3	19	88	11	63	69	0	30	0	0.88
9558802--9558830	10	2.9	10	100	0	58	62	0	37	0	0.96
9571018--9571194	70	2.5	70	100	0	354	37	14	17	31	1.89
9571336--9571369	16	2.1	17	88	5	52	17	11	5	64	1.45
9571366--9571650	49	5.8	49	98	1	536	29	15	18	36	1.92
9571385--9571704	98	3.3	95	93	4	491	27	14	20	37	1.92
9571385--9571704	147	2.2	144	92	5	518	27	14	20	37	1.92
9571972--9572005	16	2.1	17	88	5	52	17	11	5	64	1.45
9571911--9572169	91	2.9	88	82	10	309	26	18	18	37	1.93
9572268--9572483	54	4.1	55	84	10	288	28	15	17	37	1.91
9572276--9572483	104	2.0	103	87	5	303	28	15	18	37	1.91
9572725--9572758	14	2.4	15	90	9	54	70	2	0	26	1.01
9572754--9572855	30	3.4	30	83	2	125	30	22	2	44	1.68
9573119--9573168	10	5.2	10	80	7	59	70	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9573122--9573164	19	2.3	19	88	11	63	69	0	30	0	0.88
9573234--9573268	3	11.3	3	93	6	61	68	0	31	0	0.90
9573385--9573511	34	3.6	33	71	10	94	74	17	3	3	1.12
9573449--9573478	14	2.2	13	94	5	51	90	10	0	0	0.47
9573385--9573515	69	1.9	65	85	9	154	73	17	5	3	1.17
9573504--9573544	15	2.7	15	82	17	57	68	17	14	0	1.22
9573658--9573770	15	7.6	15	74	20	87	78	0	21	0	0.75
9573658--9573769	7	15.1	7	77	15	93	79	0	20	0	0.73
9573656--9573765	8	14.0	8	79	9	102	79	0	20	0	0.74
9574316--9574356	21	2.0	21	86	9	59	51	17	4	26	1.65
9574347--9574514	17	9.6	18	76	11	152	29	11	10	49	1.71
9574352--9574514	35	4.7	34	79	8	159	30	11	10	48	1.72
9574475--9574603	36	3.4	38	71	16	106	35	9	12	42	1.75
9586284--9586731	53	7.5	53	64	21	167	26	14	21	37	1.92
9586206--9586732	122	4.3	122	100	0	1054	26	14	21	36	1.92
9586766--9598134	122	92.6	122	94	3	5351	26	13	21	37	1.91
9586206--9590793	924	5.0	913	90	6	5350	26	13	21	37	1.92
9587492--9593076	924	6.0	919	89	6	5507	26	13	21	37	1.92
9589828--9595412	924	6.0	919	89	6	5507	26	13	21	37	1.92
9592147--9596756	924	5.0	914	90	5	5479	26	13	21	37	1.91
9586206--9597068	924	11.8	919	89	6	5129	26	13	21	37	1.92
9597247--9597347	51	2.0	51	98	1	195	35	11	13	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9597893--9598098	54	3.5	54	67	17	151	28	14	20	36	1.92
9598118--9598152	17	2.0	18	88	5	54	17	11	5	65	1.43
9598057--9598468	191	2.2	185	83	10	504	27	16	17	38	1.92
9598057--9598316	92	2.9	87	79	13	284	26	17	17	37	1.92
9598241--9598430	106	1.8	105	88	3	292	26	15	16	40	1.89
9598412--9598688	55	5.1	54	86	9	311	31	15	16	37	1.90
9598432--9598635	55	3.7	55	92	5	319	32	15	17	34	1.91
9598960--9599075	30	3.9	30	84	3	128	30	23	3	43	1.70
9598957--9599089	30	4.5	29	74	16	94	33	21	3	42	1.68
9599428--9599479	3	16.0	3	88	11	68	65	0	34	0	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161