genome.fa.s22.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  111  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35306193--35306300	51	2.1	53	83	10	134	42	10	4	42	1.59
35307144--35307565	42	10.1	43	84	3	508	36	22	18	22	1.95
35319157--35319227	33	2.2	33	100	0	142	23	28	19	28	1.99
35322062--35322180	59	2.0	59	91	0	193	29	23	15	31	1.95
35334015--35334049	14	2.5	14	90	0	52	22	20	25	31	1.98
35334175--35334212	4	9.5	4	94	0	67	52	21	0	26	1.47
35337069--35337093	11	2.3	11	100	0	50	84	0	8	8	0.79
35337857--35338151	50	5.9	50	77	1	313	24	20	23	32	1.98
35337867--35338177	100	3.1	100	89	0	442	24	21	23	31	1.98
35338362--35338495	44	3.0	45	77	2	162	29	24	17	28	1.97
35339777--35339827	7	7.3	7	83	16	70	15	15	0	68	1.21
35339777--35339835	14	4.1	15	83	16	72	15	16	0	67	1.23
35339777--35339835	21	2.7	22	82	12	77	15	16	0	67	1.23
35340693--35340730	14	2.6	15	83	8	51	5	18	0	76	0.97
35340697--35340735	14	2.8	14	84	0	51	7	12	0	79	0.93
35349941--35349970	15	2.0	15	93	0	51	23	26	13	36	1.92
35352494--35352527	15	2.2	16	94	5	61	61	8	0	29	1.26
35352493--35352530	15	2.4	16	86	13	60	60	7	0	31	1.25
35354739--35354804	20	3.2	20	79	16	71	48	1	0	50	1.10
35354733--35354807	21	3.5	21	70	20	57	48	1	0	50	1.09
35356643--35357188	276	2.0	272	94	1	966	32	9	32	24	1.87
35360624--35360691	23	3.2	23	64	23	67	29	7	13	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35360618--35360699	40	2.0	40	100	0	164	29	8	12	50	1.69
35365012--35365293	29	9.7	29	96	0	492	27	1	25	45	1.62
35367428--35367461	15	2.3	15	90	5	52	67	5	0	26	1.13
35367559--35367616	29	2.0	29	90	9	93	58	1	0	39	1.08
35367650--35367698	22	2.2	21	80	16	55	30	0	32	36	1.58
35367653--35367752	52	1.9	52	87	0	146	36	0	30	34	1.58
35367705--35367773	22	3.1	22	89	0	102	40	0	24	34	1.56
35369069--35369102	3	11.3	3	87	0	50	32	0	5	61	1.20
35369946--35369981	17	2.1	18	89	5	56	19	2	13	63	1.41
35373757--35373956	106	1.9	106	94	0	355	39	10	20	31	1.85
35374985--35375282	18	16.7	18	68	9	135	44	11	11	32	1.76
35374979--35375223	35	7.0	34	71	10	125	46	11	11	31	1.74
35374982--35375283	54	5.6	54	76	5	240	45	11	11	32	1.75
35375071--35375278	35	5.8	35	76	10	147	44	10	12	32	1.76
35374982--35375283	72	4.2	71	73	11	183	45	11	11	32	1.75
35375026--35375228	107	1.9	107	83	4	266	46	12	11	29	1.77
35375270--35375315	23	2.0	24	91	4	76	34	6	15	43	1.72
35375503--35375565	21	3.1	19	78	15	54	36	11	14	38	1.81
35375924--35375978	8	7.1	7	80	15	56	0	18	1	80	0.81
35375924--35375989	16	4.1	16	78	18	73	0	19	1	78	0.82
35375956--35376004	14	3.4	14	82	2	62	0	20	0	79	0.73
35375923--35376005	16	5.4	16	73	16	61	0	20	1	78	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35376104--35376161	20	2.8	20	82	14	66	0	10	17	72	1.11
35376110--35376165	21	2.7	21	88	5	69	0	10	16	73	1.10
35376234--35376316	7	11.7	7	81	10	89	0	26	2	71	0.99
35376244--35376318	4	18.8	4	76	15	75	0	25	2	72	0.98
35376420--35376456	17	2.1	18	90	5	58	0	21	2	75	0.92
35376797--35376892	30	3.2	30	80	1	113	41	3	17	37	1.66
35376797--35376891	29	3.2	29	77	4	91	42	3	17	36	1.66
35377377--35377487	56	2.0	55	92	1	186	38	7	11	42	1.69
35381056--35381094	18	2.2	18	90	9	62	56	2	0	41	1.13
35388778--35388902	33	3.8	33	78	3	126	24	24	18	32	1.97
35391987--35392016	15	1.9	16	93	6	53	70	13	0	16	1.18
35392607--35392740	31	4.4	31	74	9	105	24	15	11	47	1.79
35395303--35395345	12	3.6	12	87	0	59	25	4	2	67	1.22
35397549--35397624	28	2.9	24	75	19	62	39	0	3	56	1.18
35400944--35401254	22	13.3	23	73	14	187	43	17	13	25	1.85
35400964--35401278	25	13.4	24	70	17	164	44	17	13	24	1.84
35400944--35401278	47	7.1	47	89	2	388	44	17	13	25	1.85
35402265--35402334	27	2.6	27	88	6	97	28	27	12	31	1.93
35415806--35415851	23	2.0	23	95	0	83	17	50	8	23	1.74
35419486--35419535	22	2.1	24	85	10	68	26	0	4	70	1.05
35420083--35420147	31	2.1	31	94	0	112	44	12	10	32	1.76
35424707--35424767	23	2.5	24	78	5	70	52	0	4	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35435000--35435039	20	2.0	20	95	0	71	30	12	5	52	1.60
35438627--35438659	17	1.9	17	93	0	57	57	15	12	15	1.65
35468441--35468517	26	3.0	26	94	0	127	37	12	18	31	1.88
35469830--35469875	20	2.3	20	96	0	83	17	8	43	30	1.79
35470112--35470148	14	2.5	16	83	16	53	0	29	0	70	0.88
35470301--35470325	13	1.9	13	100	0	50	24	8	8	60	1.52
35470840--35471230	27	14.4	27	82	5	443	39	16	16	27	1.90
35474208--35474567	27	13.3	27	82	4	393	39	17	16	27	1.90
35474706--35474784	26	3.0	25	72	9	68	24	27	17	30	1.97
35477657--35477694	18	2.0	20	85	15	53	47	0	26	26	1.52
35482385--35482487	37	2.8	37	90	0	152	16	15	30	37	1.90
35492433--35492468	18	1.9	18	88	5	54	58	0	25	16	1.38
35493448--35494166	362	2.0	354	95	2	1303	40	5	19	34	1.74
35494516--35494555	20	2.0	20	85	9	55	20	25	15	40	1.90
35499616--35499762	20	7.3	20	71	3	89	14	31	17	36	1.90
35502844--35502883	17	2.4	17	86	0	53	30	5	17	47	1.69
35507826--35507877	24	2.2	24	92	0	86	36	3	7	51	1.49
35517262--35517796	104	5.2	103	79	4	558	30	21	18	28	1.97
35517254--35517797	207	2.6	208	84	3	704	30	21	18	28	1.97
35527931--35528012	43	1.9	43	94	0	146	48	2	25	23	1.63
35529564--35529607	19	2.3	19	96	0	79	13	20	9	56	1.64
35529951--35529994	20	2.2	20	88	4	63	4	22	9	63	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35529963--35530000	20	1.9	20	94	0	67	2	21	5	71	1.19
35530021--35530051	16	1.9	16	100	0	62	22	6	12	58	1.58
35530301--35530385	33	2.6	33	94	0	143	17	18	22	41	1.91
35533290--35533436	43	3.5	43	80	7	149	27	17	25	29	1.97
35534786--35534938	77	2.0	77	98	0	297	33	9	22	34	1.87
35535471--35535607	29	4.7	29	87	0	184	37	13	24	24	1.91
35541821--35541886	32	2.1	30	88	5	96	42	1	3	53	1.25
35541841--35541882	20	2.0	20	81	4	57	40	2	2	54	1.26
35541919--35541956	19	2.0	20	85	10	53	28	0	7	63	1.23
35546707--35546882	88	2.0	88	92	0	289	28	23	18	30	1.97
35549993--35550041	20	2.4	21	79	3	55	36	4	6	53	1.45
35553287--35553328	20	2.0	21	86	4	59	61	4	0	33	1.17
35554082--35554128	19	2.3	20	89	7	69	57	4	2	36	1.30
35554096--35554162	19	3.6	19	73	13	59	52	2	0	44	1.16
35554093--35554172	36	2.3	35	79	12	92	51	2	0	46	1.14
35554698--35554739	15	2.9	15	85	3	59	35	0	7	57	1.26
35554698--35554739	14	2.9	14	82	6	57	35	0	7	57	1.26
35556974--35557030	28	2.0	28	86	3	78	54	3	0	42	1.17
35556974--35557030	29	2.0	28	83	10	71	54	3	0	42	1.17
35562232--35562287	26	2.2	26	83	3	69	44	10	16	28	1.80
35571988--35572039	26	2.0	26	96	0	95	21	11	21	46	1.82
35582737--35582935	26	7.7	26	86	2	247	36	18	16	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35590390--35590530	26	5.4	26	85	4	167	34	19	17	28	1.94
35590872--35590969	28	3.3	28	72	18	90	24	25	22	27	2.00
35591736--35591768	10	3.0	11	87	12	50	33	0	3	63	1.10
35595185--35595231	20	2.4	20	80	16	62	14	25	4	55	1.58
35595437--35595614	50	3.6	49	79	6	157	23	29	20	26	1.99
35595437--35595564	49	2.6	49	82	6	152	22	28	21	28	1.99
35597018--35597089	5	14.8	5	74	21	64	38	1	4	55	1.28
35597047--35597089	19	2.3	19	92	8	70	41	2	0	55	1.12
35597099--35597132	17	2.0	17	94	0	59	79	0	17	2	0.86
35597099--35597132	9	3.9	9	84	7	52	79	0	17	2	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161