genome.fa.s22.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  39  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11964231--11964257	12	2.2	12	100	0	54	14	22	18	44	1.86
11967363--11967437	32	2.3	32	82	8	82	37	6	5	50	1.51
11975904--11975936	3	11.0	3	100	0	66	66	0	0	33	0.92
11976304--11976413	23	5.0	23	82	11	142	36	23	20	20	1.95
11977625--11977657	15	2.2	15	89	10	50	69	3	0	27	1.03
11977800--11977848	25	2.0	24	84	11	64	46	2	0	51	1.12
11977804--11977863	20	3.0	20	71	23	56	48	1	0	50	1.11
11986464--11986560	49	2.0	49	93	0	167	24	19	28	26	1.99
11995725--11996129	27	15.0	27	81	7	358	43	20	18	16	1.88
11995740--11996129	54	7.2	54	82	7	418	43	21	19	16	1.88
11995718--11996128	81	5.1	81	90	2	533	43	20	18	16	1.88
11996342--11996402	30	2.0	31	93	3	106	26	26	22	24	2.00
11999668--11999741	8	9.4	8	73	19	66	51	1	1	45	1.18
11999668--11999742	27	2.7	26	75	24	82	52	1	1	45	1.17
12000046--12000081	18	2.0	18	100	0	72	5	22	38	33	1.77
12005054--12005105	24	2.1	24	82	3	59	57	5	3	32	1.40
12005065--12005114	24	2.1	23	81	7	55	54	10	2	34	1.45
12017984--12018133	72	2.1	72	83	2	185	22	22	24	30	1.99
12018749--12018790	22	1.9	22	90	0	66	19	2	45	33	1.63
12018941--12018988	20	2.4	21	86	6	64	14	0	33	52	1.42
12019120--12019194	14	5.5	13	80	10	71	21	2	30	45	1.66
12019120--12019194	21	3.6	19	78	16	78	21	2	30	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12019120--12019194	7	10.9	7	78	7	64	21	2	30	45	1.66
12019662--12019899	115	2.1	114	89	2	361	28	17	20	34	1.95
12019762--12020291	261	2.0	260	93	0	907	27	16	20	34	1.95
12022824--12023433	9	68.2	9	79	8	629	48	15	1	34	1.53
12029068--12029138	21	3.4	20	71	11	54	35	18	43	2	1.65
12029510--12029559	26	1.9	26	95	0	91	28	26	18	28	1.98
12029536--12029687	42	3.6	43	86	2	200	36	21	21	20	1.95
12030912--12030996	23	3.9	23	69	12	88	44	7	25	22	1.78
12030926--12031009	42	2.0	42	95	0	150	45	8	22	23	1.79
12031176--12031224	21	2.4	20	83	10	55	22	10	0	67	1.20
12031197--12031248	21	2.5	20	79	11	61	15	13	0	71	1.15
12031199--12031241	20	2.2	18	84	12	50	13	11	0	74	1.07
12035390--12035479	23	4.1	23	71	11	98	45	6	26	21	1.76
12035409--12035492	42	2.0	42	95	0	150	45	8	22	23	1.79
12045659--12045733	32	2.3	32	82	8	82	37	6	5	50	1.51
12048182--12048211	12	2.4	12	94	5	51	83	0	6	10	0.81
12066749--12066773	11	2.3	11	100	0	50	48	16	20	16	1.82
12072470--12072731	39	6.7	40	88	7	337	24	27	22	25	2.00
12080260--12080298	20	2.0	20	94	0	69	35	20	23	20	1.96
12089828--12089871	22	2.0	22	86	0	61	36	6	29	27	1.83
12098421--12098621	102	2.0	102	90	0	321	32	27	20	19	1.97
12128166--12128570	203	2.0	203	91	0	657	30	20	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12133596--12133668	3	24.3	3	100	0	146	34	0	0	65	0.93
12137486--12137572	41	2.1	41	91	0	138	22	26	20	29	1.99
12137797--12137833	19	1.9	19	94	0	65	45	18	0	35	1.50
12141252--12141341	6	14.7	6	81	4	54	71	7	10	11	1.32
12142654--12143235	50	11.6	50	71	8	414	32	23	18	25	1.97
12142628--12143293	100	6.7	100	88	2	944	31	23	19	25	1.98
12142628--12143897	200	6.4	199	85	4	1541	32	23	19	24	1.97
12142628--12143286	50	13.2	50	69	4	398	32	23	19	25	1.98
12143206--12143378	85	2.0	85	85	2	231	30	26	17	24	1.97
12143291--12143821	50	10.6	50	69	4	329	33	25	18	22	1.96
12143291--12143897	100	6.1	100	92	0	892	34	24	18	23	1.96
12143495--12143870	50	7.5	49	67	10	215	33	24	19	22	1.97
12147789--12147815	2	13.5	2	100	0	54	51	0	0	48	1.00
12147853--12147877	8	3.1	8	100	0	50	60	0	0	40	0.97
12148885--12148915	16	1.9	16	93	0	53	0	16	0	83	0.64
12153951--12153983	9	3.8	9	88	4	50	24	21	9	45	1.80
12157467--12157951	143	3.4	143	90	0	745	31	20	21	26	1.98
12160053--12160118	33	2.0	33	100	0	132	21	21	21	36	1.95
12161514--12161572	25	2.4	25	100	0	118	35	0	0	64	0.94
12161557--12161596	11	3.5	11	83	12	53	37	2	0	60	1.11
12186078--12186111	17	2.0	17	88	0	50	55	2	0	41	1.15
12186087--12186186	17	5.5	18	69	21	57	50	4	4	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12190438--12190475	15	2.4	16	83	16	53	78	0	5	15	0.91
12202309--12202369	32	1.9	32	83	12	81	44	4	1	49	1.33
12205597--12205625	10	3.0	10	95	5	51	20	6	0	72	1.07
12209122--12209189	35	1.9	35	87	0	100	39	11	4	44	1.61
12210140--12210190	22	2.3	22	82	3	57	25	0	15	58	1.37
12210230--12210282	21	2.5	21	84	3	70	24	0	9	66	1.21
12213435--12213470	3	11.7	3	94	5	63	30	0	2	66	1.06
12216524--12216561	17	2.2	17	90	9	60	34	0	0	65	0.93
12225249--12225433	46	4.0	46	87	6	277	36	8	25	29	1.86
12227021--12227183	77	2.1	75	84	4	202	53	12	8	25	1.67
12229458--12229503	24	2.0	24	87	8	69	54	0	2	43	1.12
12238427--12238477	26	2.0	26	96	0	93	17	11	23	47	1.81
12240739--12240773	18	2.0	17	88	5	52	45	0	0	54	0.99
12240648--12241150	120	4.2	120	96	0	916	43	2	5	48	1.40
12240979--12241013	18	2.0	17	88	5	52	45	0	0	54	0.99
12241369--12241437	16	4.2	16	88	3	102	37	34	1	26	1.65
12241369--12241437	33	2.1	32	89	2	102	37	34	1	26	1.65
12241510--12241559	25	2.0	26	88	11	77	46	4	10	40	1.56
12241552--12241593	17	2.7	16	82	13	52	52	2	4	40	1.35
12243301--12243365	26	2.5	26	80	2	78	18	23	21	36	1.95
12245405--12245429	13	1.9	13	100	0	50	32	4	24	40	1.73
12246704--12246980	75	3.6	75	77	5	220	32	3	18	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12248420--12248469	24	2.1	24	96	0	91	54	16	6	24	1.64
12248614--12248649	16	2.2	16	90	0	54	50	2	8	38	1.47
12248895--12248961	21	3.3	20	75	14	66	64	1	5	28	1.26
12248895--12248946	3	18.0	3	80	4	54	67	1	3	26	1.18
12250339--12250443	44	2.4	44	86	0	138	29	22	20	27	1.98
12250343--12250459	44	2.7	44	82	2	137	29	19	20	30	1.97
12250469--12250621	44	3.5	45	76	9	154	28	24	17	30	1.97
12250743--12251056	46	6.8	46	91	0	457	29	27	16	25	1.97
12260737--12260875	75	1.9	75	85	0	197	31	2	18	46	1.64
12260753--12260896	75	1.9	75	82	0	180	35	2	18	44	1.61
12261638--12261680	22	2.0	22	81	9	52	11	6	6	74	1.21
12264709--12264752	19	2.3	20	84	7	56	27	20	11	40	1.86
12266802--12266867	9	7.7	9	86	13	95	78	10	0	10	0.96
12266803--12266872	8	8.5	8	87	12	90	78	10	0	11	0.96
12266802--12266872	17	4.2	17	87	12	103	78	9	0	11	0.95
12266823--12266879	8	7.6	7	84	13	53	75	10	1	12	1.12
12266883--12266932	17	2.9	17	78	3	55	74	0	26	0	0.83
12267981--12268183	41	4.8	41	68	12	124	29	17	22	31	1.96
12267933--12268093	44	3.7	44	73	9	143	31	18	20	30	1.96
12268022--12268120	44	2.2	44	78	3	110	32	17	19	31	1.94
12267933--12268179	129	1.9	129	89	1	379	30	17	21	30	1.96
12268148--12268237	46	2.0	46	90	0	144	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12268396--12268703	44	7.1	44	68	12	163	31	17	21	29	1.96
12268387--12268793	129	3.2	129	90	0	598	30	17	21	29	1.96
12278250--12278313	25	2.6	25	87	0	92	14	21	18	45	1.85
12278506--12278592	24	3.6	24	78	7	95	16	26	20	36	1.93
12278577--12278643	25	2.7	25	80	0	80	28	29	13	28	1.94
12278989--12279075	24	3.6	24	78	7	95	16	26	20	36	1.93
12279060--12279126	25	2.7	25	80	0	80	28	29	13	28	1.94
12278454--12279421	483	2.0	483	99	0	1900	28	19	18	34	1.95
12282089--12282258	51	3.3	49	75	12	137	24	14	28	32	1.94
12282179--12282259	26	3.2	26	62	28	64	22	13	29	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161