genome.fa.s22.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  160  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49933143--49933268	66	1.9	66	98	0	243	41	6	13	38	1.70
49945614--49946066	225	2.0	223	97	0	852	30	9	25	35	1.87
49947410--49947455	23	2.0	23	95	0	83	36	21	6	34	1.80
49955025--49955081	21	2.8	21	82	15	66	61	0	8	29	1.26
49955037--49955091	21	2.5	22	80	13	69	61	0	9	29	1.26
49956713--49956770	27	2.1	27	81	15	66	20	5	32	41	1.75
49959660--49959705	23	2.0	23	100	0	92	34	26	26	13	1.92
49962512--49962557	23	2.0	23	100	0	92	34	26	26	13	1.92
49964691--49964739	20	2.5	20	86	6	64	57	6	0	36	1.24
49964691--49964750	21	2.8	21	80	10	68	56	8	0	35	1.29
49965226--49965310	42	2.0	42	100	0	170	21	21	16	41	1.90
49965246--49965313	20	3.3	20	72	8	73	25	19	16	39	1.91
49965344--49965483	39	3.6	39	94	0	235	13	26	22	37	1.92
49981545--49981603	31	1.9	31	89	6	93	37	11	8	42	1.72
49986949--49986982	3	11.3	3	100	0	68	67	0	0	32	0.91
49987202--49987248	15	3.2	14	85	8	58	59	0	2	38	1.09
49987597--49987629	5	6.6	5	100	0	66	60	0	0	39	0.97
49995727--49995781	21	2.5	21	85	5	74	25	7	16	50	1.70
49999410--49999439	14	2.1	14	93	0	51	16	0	36	46	1.47
50003119--50003163	23	2.0	23	82	8	56	62	4	0	33	1.15
50004406--50004461	25	2.3	24	81	3	58	10	12	3	73	1.22
50009155--50009184	14	2.1	14	93	0	51	16	0	36	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50010872--50010915	17	2.6	17	96	0	79	75	0	25	0	0.81
50011330--50011444	51	2.3	51	89	0	167	20	18	19	42	1.89
50011370--50011510	57	2.4	59	85	4	180	19	17	18	44	1.87
50011643--50011677	18	1.9	18	94	0	61	34	14	17	34	1.90
50011645--50011691	18	2.6	18	86	0	58	34	14	14	36	1.88
50015123--50015189	6	11.2	6	77	6	55	44	1	34	19	1.60
50018942--50018981	20	2.0	20	95	0	71	47	10	22	20	1.79
50022013--50022044	5	6.6	5	92	7	57	81	0	0	18	0.70
50022014--50022044	9	3.3	9	95	4	53	80	0	0	19	0.71
50030626--50030680	21	2.6	22	77	5	60	38	0	3	58	1.16
50030815--50030844	9	3.4	9	95	4	53	36	0	0	63	0.95
50031052--50031082	3	10.3	3	100	0	62	32	0	0	67	0.91
50031198--50031266	28	2.4	29	80	4	86	47	0	1	50	1.09
50046205--50046348	72	2.0	72	91	0	234	30	28	20	20	1.98
50055081--50055112	12	2.8	12	90	9	50	78	0	21	0	0.76
50061618--50061683	13	5.1	13	78	5	71	46	9	0	43	1.35
50064592--50064707	56	2.1	56	98	0	223	21	6	23	48	1.74
50068655--50068729	30	2.5	30	78	8	73	46	6	4	42	1.48
50072250--50072400	60	2.5	60	91	1	239	50	13	13	21	1.76
50072375--50072452	31	2.5	31	87	2	104	48	11	12	26	1.75
50074995--50075037	12	3.6	12	83	0	50	32	11	0	55	1.36
50075108--50075175	29	2.3	29	78	14	77	35	1	11	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50076997--50077026	12	2.4	13	94	5	53	30	0	0	70	0.88
50077752--50077799	13	3.7	13	85	0	69	29	8	25	37	1.85
50081003--50081067	20	3.4	19	83	12	80	58	7	0	33	1.27
50081001--50081072	18	3.9	18	82	12	60	58	6	0	34	1.25
50082634--50082711	17	4.9	16	72	17	65	8	10	2	78	1.06
50082639--50082717	30	2.7	29	88	7	115	10	10	1	78	1.02
50082738--50082808	9	7.9	9	76	10	65	12	4	2	80	0.97
50082754--50082799	24	1.9	24	86	8	67	10	4	4	80	0.99
50082730--50082808	34	2.4	32	81	10	88	13	5	2	78	1.02
50082812--50082932	28	4.4	27	68	21	74	38	2	6	52	1.41
50083911--50083971	28	2.2	28	100	0	122	52	4	0	42	1.23
50083994--50084027	10	3.5	10	88	8	52	44	0	0	55	0.99
50083587--50084381	397	2.0	397	98	0	1545	47	7	6	38	1.57
50084308--50084368	28	2.2	28	96	0	113	54	4	0	40	1.22
50084396--50084456	17	3.5	17	78	8	61	78	3	6	11	1.05
50084471--50084546	23	3.1	22	72	20	55	77	1	9	11	1.05
50084484--50084540	17	3.8	17	65	29	56	77	1	8	12	1.07
50084477--50084547	27	2.5	28	88	6	108	77	1	9	11	1.06
50085953--50086021	20	3.6	18	78	7	57	53	8	2	34	1.47
50088577--50088668	34	2.7	33	75	16	82	51	0	1	47	1.07
50097813--50097839	12	2.2	12	100	0	54	51	0	29	18	1.46
50103393--50103423	9	3.3	9	91	8	53	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50103712--50103741	6	5.0	6	95	0	51	66	13	0	20	1.24
50108255--50108370	24	4.7	25	69	12	71	18	24	18	39	1.92
50108349--50108398	25	2.0	25	88	7	75	26	18	20	36	1.95
50108357--50108408	25	2.0	25	82	10	61	25	19	19	36	1.95
50110749--50110787	18	2.2	18	95	4	71	56	20	0	23	1.42
50111446--50111478	7	4.9	7	85	7	50	87	3	9	0	0.63
50111842--50111905	31	2.1	31	91	2	103	59	14	3	23	1.49
50117562--50117623	30	2.1	30	93	0	106	27	1	12	58	1.44
50117926--50118145	73	3.0	73	99	0	431	26	15	16	41	1.87
50118930--50119023	47	2.0	47	100	0	188	46	14	4	34	1.64
50119550--50119609	31	1.9	31	83	6	77	41	10	16	31	1.81
50123155--50123381	46	4.9	46	93	1	339	40	13	24	21	1.90
50123667--50123699	17	2.0	17	94	5	59	48	0	15	36	1.45
50126028--50126088	30	2.0	30	83	0	77	31	22	8	37	1.84
50127510--50127549	4	9.5	4	84	10	53	22	2	0	75	0.93
50127510--50127546	13	2.8	13	95	0	65	21	2	0	75	0.92
50127510--50127549	17	2.3	18	87	8	57	22	2	0	75	0.93
50127565--50127638	37	2.1	33	82	12	85	39	0	4	56	1.18
50127570--50127656	21	3.9	23	79	19	80	40	0	2	57	1.11
50127570--50127645	22	3.2	25	78	19	83	40	0	2	56	1.13
50127616--50127695	36	2.2	38	82	8	94	42	2	0	55	1.13
50127609--50127703	22	4.3	21	71	17	77	40	2	0	57	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50127984--50128042	22	2.7	23	75	19	72	62	3	0	33	1.12
50128131--50128198	31	2.1	33	84	10	88	61	1	0	36	1.05
50128157--50128198	19	2.1	21	91	8	70	59	0	0	40	0.97
50128158--50128220	23	2.9	23	84	9	62	53	4	0	41	1.22
50128228--50128269	21	2.0	21	85	4	57	76	4	0	19	0.96
50128469--50128521	22	2.4	23	76	17	60	60	3	0	35	1.15
50128561--50128615	22	2.5	22	85	8	69	60	1	1	36	1.18
50128664--50128692	14	2.0	15	93	6	51	75	0	0	24	0.80
50129783--50129817	6	5.8	6	100	0	70	0	68	0	31	0.90
50132241--50132429	59	3.2	57	68	20	145	41	3	4	51	1.37
50132268--50132475	66	3.3	63	67	20	184	41	2	6	49	1.43
50132230--50132522	120	2.4	120	95	2	518	42	2	4	50	1.36
50132355--50132406	15	3.6	15	80	12	56	44	0	1	53	1.11
50132303--50132490	61	3.1	61	69	17	201	43	1	6	48	1.38
50132484--50132525	15	2.7	16	82	14	52	45	0	2	52	1.13
50132475--50132516	15	2.9	15	82	10	52	47	0	0	52	1.00
50132459--50132764	157	1.9	157	95	1	551	48	5	2	43	1.40
50132827--50132917	45	2.0	45	85	2	121	37	28	6	27	1.82
50132898--50132966	16	4.2	16	96	3	129	37	37	0	24	1.56
50132898--50132966	33	2.1	32	97	2	129	37	37	0	24	1.56
50136146--50136213	16	4.2	16	90	7	102	27	0	33	38	1.57
50136146--50136213	32	2.1	32	94	0	118	27	0	33	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50136343--50136652	157	2.0	157	93	0	530	44	3	4	47	1.41
50137532--50137561	13	2.3	13	100	0	60	60	13	6	20	1.55
50141006--50141034	6	4.8	6	100	0	58	31	0	68	0	0.89
50144732--50144775	22	2.0	22	91	8	72	38	0	0	61	0.96
50147017--50147080	31	2.1	31	88	2	94	34	14	10	40	1.80
50155250--50155405	60	2.5	60	81	7	179	17	14	19	48	1.81
50165240--50165410	85	2.0	85	81	2	200	28	13	18	39	1.89
50167754--50167799	19	2.3	20	82	14	60	47	8	6	36	1.60
50170352--50170539	64	3.0	63	82	3	243	44	6	6	42	1.56
50172592--50172629	16	2.3	17	90	4	60	57	2	0	39	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161