genome.fa.s22.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  51  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15712499--15712675	84	2.1	86	96	3	340	51	12	7	28	1.67
15713938--15713999	32	1.9	33	86	3	90	59	4	0	35	1.19
15716560--15716658	41	2.4	41	83	11	132	21	29	15	34	1.94
15716587--15716645	20	3.0	20	65	9	57	13	32	16	37	1.88
15716596--15716681	41	2.1	40	80	6	93	20	32	13	32	1.92
15717900--15718102	94	2.1	95	80	3	221	29	12	16	40	1.86
15718059--15718334	94	2.9	94	84	0	354	27	17	18	37	1.92
15719654--15719696	8	5.4	8	82	0	50	51	11	0	37	1.39
15721669--15721699	11	2.8	11	90	0	53	32	0	0	67	0.91
15721821--15721883	30	2.1	30	90	0	99	58	15	3	22	1.51
15721916--15721980	33	2.0	33	81	0	76	67	10	7	13	1.41
15723688--15723778	38	2.4	38	88	0	128	18	23	24	34	1.96
15727283--15727420	19	6.8	19	70	23	95	37	7	16	37	1.78
15727261--15727386	63	2.0	61	95	3	225	38	9	16	34	1.81
15727376--15727420	23	2.0	23	91	4	74	37	4	17	40	1.70
15727335--15727404	17	4.0	17	75	14	70	35	8	18	37	1.82
15727386--15727430	23	2.0	23	86	4	65	33	4	15	46	1.66
15732924--15733123	44	4.5	45	80	8	223	26	17	25	31	1.97
15733137--15734156	132	7.7	132	93	1	1645	32	19	23	24	1.98
15733146--15734099	44	21.7	44	63	14	234	31	19	23	24	1.98
15734597--15734641	23	2.0	23	91	4	74	37	4	17	40	1.70
15734556--15734625	17	4.0	17	75	14	70	35	7	18	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15734607--15734651	23	2.0	23	86	4	65	33	4	15	46	1.66
15738144--15738187	2	22.5	2	90	4	72	0	47	0	52	1.00
15738562--15738608	24	2.0	24	83	8	60	65	10	4	19	1.39
15739270--15739313	17	2.8	16	83	16	56	27	0	4	68	1.09
15739986--15740027	21	2.0	22	85	4	59	61	0	7	30	1.22
15742208--15742264	27	2.1	27	93	0	96	21	14	35	29	1.92
15742208--15742276	27	2.6	27	88	4	86	23	14	34	27	1.94
15742260--15742328	27	2.6	27	79	4	68	28	13	31	26	1.93
15743912--15743997	45	1.9	45	82	0	109	47	11	16	24	1.79
15752066--15752094	13	2.2	13	100	0	58	58	24	0	17	1.38
15753249--15753397	49	3.0	49	77	11	167	34	23	16	25	1.95
15760853--15760943	25	3.6	25	80	5	94	29	18	25	26	1.98
15761839--15761881	23	1.9	23	86	13	63	39	23	0	37	1.55
15766533--15766567	16	2.2	16	94	0	61	22	20	11	45	1.82
15770004--15770043	18	2.2	18	86	0	53	15	12	12	60	1.60
15771817--15771903	31	2.9	31	68	16	85	40	9	9	41	1.69
15774688--15774800	51	2.2	51	93	0	190	34	15	21	29	1.93
15777231--15777295	20	3.2	20	76	10	69	53	0	1	44	1.09
15783802--15783978	93	1.9	93	88	2	266	36	21	15	25	1.93
15786596--15786636	21	2.0	20	85	4	55	60	7	0	31	1.24
15786608--15786669	28	2.2	28	83	11	74	56	3	3	37	1.32
15786777--15786824	19	2.4	21	83	13	66	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15792445--15792479	15	2.4	15	95	4	63	54	0	0	45	0.99
15796661--15796706	23	2.0	23	95	0	83	36	8	26	28	1.86
15796662--15796713	23	2.3	23	89	0	77	36	9	28	25	1.87
15798626--15798687	25	2.5	25	86	0	79	30	22	24	22	1.99
15809588--15809629	10	3.8	11	81	9	50	7	9	0	83	0.81
15809587--15809627	16	2.6	16	81	14	57	9	7	0	82	0.83
15810179--15810225	25	2.0	25	91	8	80	29	4	0	65	1.11
15810452--15810483	16	2.1	16	94	5	57	59	12	0	28	1.34
15813005--15813046	18	2.3	18	92	8	68	54	4	11	28	1.57
15813000--15813038	8	4.8	8	85	14	53	61	2	10	25	1.41
15835382--15835411	15	1.9	16	93	6	53	63	6	10	20	1.47
15848429--15848507	25	3.2	25	72	21	76	29	21	26	22	1.99
15848439--15848508	24	2.8	25	79	12	90	25	22	27	24	2.00
15850837--15850967	45	2.9	45	79	4	122	41	15	22	21	1.90
15851272--15851328	27	2.1	27	90	0	87	29	14	29	26	1.95
15853389--15853413	12	2.1	12	100	0	50	32	20	16	32	1.94
15856792--15856863	26	2.8	25	74	12	65	18	26	22	33	1.96
15856828--15856982	73	2.1	73	84	4	197	19	24	21	34	1.96
15856925--15857042	24	4.8	25	68	9	82	22	27	19	31	1.98
15858047--15858111	34	1.9	34	90	6	105	15	27	32	24	1.95
15868620--15868682	24	2.7	23	76	11	65	66	6	0	26	1.15
15868626--15868681	24	2.3	24	81	3	67	66	7	0	26	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15880548--15880600	25	2.1	25	92	0	88	32	30	15	22	1.94
15880778--15880808	9	3.3	9	95	4	53	41	0	0	58	0.98
15891494--15891536	20	2.2	19	92	8	77	32	37	4	23	1.75
15901867--15901896	15	2.0	15	100	0	60	40	13	20	26	1.89
15902572--15902611	20	2.0	20	85	0	53	12	27	20	40	1.88
15907440--15907497	4	14.5	4	92	0	98	29	0	20	50	1.49
15909201--15909359	50	3.2	50	73	7	169	23	21	25	30	1.99
15909249--15909486	123	1.9	123	83	1	307	22	23	22	31	1.98
15909608--15910160	44	12.8	44	73	9	343	27	21	19	31	1.97
15909516--15910194	211	3.2	212	91	1	1063	27	20	18	33	1.96
15909516--15910204	219	3.2	211	89	3	967	27	20	19	33	1.96
15910186--15910565	128	3.0	128	89	1	582	26	25	17	30	1.97
15912722--15912771	13	3.8	13	86	5	66	8	8	2	82	0.93
15917151--15917968	4	204.5	4	99	0	1618	25	0	24	50	1.50
15938853--15939117	42	6.2	42	85	2	332	32	21	21	24	1.98
15938853--15939117	85	3.1	85	82	2	343	32	21	21	24	1.98
15938853--15939116	127	2.1	128	87	4	372	32	21	21	24	1.98
15939608--15939664	21	2.7	21	97	0	105	3	31	22	42	1.71
15942013--15942066	27	2.0	27	100	0	108	14	29	14	40	1.86
15945253--15945369	16	6.8	17	70	14	71	29	0	21	47	1.56
15945260--15945298	19	2.1	19	85	9	53	30	0	17	51	1.46
15945253--15945369	9	13.6	9	71	15	95	29	0	21	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15945280--15945385	25	4.2	24	75	10	88	30	1	20	47	1.61
15945253--15945369	52	2.3	50	83	7	137	29	0	21	47	1.56
15945373--15945416	19	2.3	19	92	0	70	36	0	18	45	1.49
15945488--15945528	13	2.8	15	85	14	59	34	0	19	46	1.50
15945279--15945564	16	17.4	16	68	21	123	33	1	17	46	1.59
15947166--15947211	22	2.1	21	84	11	58	17	4	0	78	0.91
15954197--15954229	17	1.9	17	93	0	57	60	0	0	39	0.97
15954210--15954256	9	5.4	9	77	10	53	55	2	0	42	1.12
15956080--15956170	34	2.7	34	88	6	96	36	8	9	45	1.69
15956101--15956170	34	2.1	34	100	0	140	35	8	8	47	1.65
15962137--15962254	43	2.7	42	78	7	121	28	16	24	29	1.97
15967910--15967934	13	1.9	13	100	0	50	36	24	8	32	1.84
15968847--15969087	38	6.3	38	86	0	347	37	28	17	16	1.92
15968942--15969044	16	5.7	16	67	24	62	33	30	20	16	1.95
15968955--15969066	22	5.7	20	68	25	78	35	29	19	15	1.92
15968852--15969087	76	3.1	76	91	0	382	37	28	17	16	1.92
15968847--15969087	114	2.1	114	91	0	383	37	28	17	16	1.92
15974515--15974552	20	1.9	20	84	10	51	15	0	7	76	1.01
15975470--15975503	6	5.7	6	85	0	50	38	0	0	61	0.96
15987701--15987768	16	4.2	16	98	0	127	26	0	35	38	1.57
15993918--15993963	23	2.0	23	100	0	92	13	4	26	56	1.55
15998347--15998391	22	2.2	20	88	8	63	37	4	2	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16003902--16003949	20	2.4	20	82	0	60	37	16	18	27	1.92
16019210--16019291	34	2.4	35	81	6	105	39	14	1	45	1.53
16022751--16022792	14	2.7	15	89	10	59	76	0	0	23	0.79
16022752--16022802	14	3.4	14	86	10	57	72	1	1	23	1.05
16022951--16023013	28	2.2	28	80	5	74	46	1	0	52	1.10
16025179--16025207	7	4.1	7	100	0	58	58	13	0	27	1.36
16033404--16033535	65	2.0	65	97	0	246	43	8	6	40	1.61
16044197--16044234	14	2.7	14	95	0	67	44	5	21	28	1.73
16048328--16048365	18	2.2	17	86	13	51	15	2	0	81	0.80
16048436--16048496	30	2.1	28	87	6	86	27	0	3	68	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161