genome.fa.s22.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  13  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4274938--4274980	21	2.1	20	86	4	59	37	0	4	58	1.19
4276421--4276452	16	2.0	16	93	0	55	21	0	12	65	1.25
4277583--4277711	10	13.3	9	74	12	80	63	2	1	32	1.16
4277584--4277693	57	1.9	57	92	0	184	65	2	1	30	1.17
4277583--4277707	9	13.1	10	70	16	70	63	2	1	32	1.17
4277720--4277753	16	2.1	16	94	0	59	52	20	5	20	1.67
4279069--4279130	26	2.4	25	75	2	61	37	11	12	38	1.80
4279912--4279975	22	3.0	21	80	12	78	42	15	6	35	1.72
4279922--4279975	23	2.6	21	83	13	67	38	14	7	38	1.75
4281235--4281288	27	2.0	27	100	0	108	14	14	14	55	1.70
4282423--4282460	19	2.0	19	85	10	51	39	21	10	28	1.86
4285884--4285924	21	1.9	22	85	14	59	26	34	7	31	1.84
4293003--4293040	6	6.3	6	91	8	60	52	15	0	31	1.43
4296673--4296722	16	3.1	16	77	11	57	42	12	6	40	1.67
4296655--4296758	55	1.9	55	89	0	163	41	12	6	39	1.69
4296728--4296758	16	1.9	16	100	0	62	38	12	6	41	1.69
4311545--4311611	20	3.5	19	75	17	59	37	1	4	56	1.29
4336786--4336843	20	3.0	20	79	18	61	50	0	1	48	1.11
4336855--4336894	19	2.1	19	90	9	64	60	0	0	40	0.97
4336927--4336983	15	3.5	15	71	17	51	47	1	1	49	1.22
4340659--4341030	48	7.7	48	78	2	361	29	16	27	25	1.97
4340648--4341027	96	3.9	96	85	1	467	29	17	27	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4348374--4348749	48	7.8	48	77	1	342	27	18	28	24	1.98
4348366--4348743	96	3.9	96	86	2	483	28	18	28	25	1.98
4348376--4348749	144	2.6	144	79	2	392	28	18	28	24	1.98
4360248--4360317	28	2.5	28	88	9	99	27	12	28	31	1.93
4360573--4360597	12	2.1	12	100	0	50	52	16	0	32	1.44
4362289--4362396	52	2.1	52	96	0	198	48	17	7	26	1.74
4375669--4375793	40	3.2	40	82	5	155	23	22	27	27	1.99
4377347--4377497	43	3.6	42	82	8	148	33	24	14	27	1.94
4378983--4379028	24	1.9	24	82	8	58	30	30	15	23	1.95
4388635--4388793	27	5.9	26	76	10	140	21	22	19	36	1.95
4388635--4388801	54	3.1	54	81	4	203	20	22	20	36	1.95
4393539--4393660	49	2.5	51	81	5	151	27	14	28	28	1.95
4397813--4397870	27	2.1	27	96	0	107	39	25	20	13	1.90
4400346--4400489	75	1.9	75	95	0	261	45	9	13	32	1.74
4401870--4401894	13	1.9	13	100	0	50	44	16	8	32	1.76
4402926--4402981	28	2.0	28	96	0	103	42	12	25	19	1.86
4407195--4407256	31	2.0	31	100	0	124	38	19	19	22	1.93
4433246--4433430	79	2.3	81	84	7	236	25	27	22	24	2.00
4433246--4433430	40	4.7	40	83	7	234	25	27	22	24	2.00
4441226--4441370	40	3.7	40	91	2	213	26	25	22	25	2.00
4442731--4442756	13	2.0	13	100	0	52	61	7	0	30	1.24
4449578--4449652	37	2.0	37	92	0	123	48	12	16	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4453057--4453254	50	3.9	50	78	2	189	27	16	25	31	1.96
4461868--4461928	27	2.3	27	88	2	97	19	22	36	21	1.95
4461966--4462354	53	7.3	52	78	10	333	37	21	10	30	1.87
4461987--4462354	80	4.6	79	80	7	370	36	20	10	31	1.87
4462027--4462289	105	2.5	104	82	7	307	37	19	11	31	1.87
4461966--4462354	27	14.6	27	78	8	368	37	21	10	30	1.87
4462346--4462453	27	4.0	27	85	0	135	33	19	24	23	1.97
4462346--4462449	54	1.9	53	88	1	154	33	18	25	23	1.96
4462869--4462933	22	3.0	22	77	8	69	20	21	23	35	1.96
4463092--4463199	27	4.0	26	85	5	126	19	22	21	37	1.95
4463317--4463404	6	14.3	6	72	17	65	20	19	12	47	1.81
4463320--4463383	25	2.6	25	89	0	92	20	20	14	45	1.85
4470209--4471044	6	139.3	6	100	0	1672	50	16	0	33	1.46
4476112--4476157	19	2.4	19	96	0	83	8	32	23	34	1.86
4478354--4478486	69	1.9	70	87	1	196	33	15	15	36	1.89
4479873--4480277	47	8.6	47	95	0	675	32	9	29	28	1.88
4488135--4488312	27	6.6	27	84	3	205	29	28	15	26	1.96
4488156--4488311	82	1.9	81	88	3	233	29	28	15	26	1.96
4488422--4488549	65	2.0	65	98	0	247	35	20	4	39	1.73
4490958--4491009	27	2.0	26	84	3	68	34	21	26	17	1.95
4493728--4493765	20	1.9	20	94	0	67	39	23	26	10	1.87
4493690--4493811	60	2.0	60	82	6	149	36	21	28	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4493795--4493844	20	2.5	20	80	6	57	44	20	18	18	1.88
4500021--4500085	32	2.0	32	93	0	112	32	29	12	26	1.92
4503167--4503199	12	2.8	12	95	0	57	18	33	36	12	1.88
4509177--4509236	25	2.4	25	80	0	66	23	21	23	31	1.98
4509202--4509254	24	2.2	25	82	3	63	22	22	26	28	1.99
4511920--4511967	18	2.6	18	83	6	60	50	2	4	43	1.33
4511982--4512029	22	2.3	21	85	7	62	27	4	8	60	1.44
4513364--4513551	50	3.7	50	83	4	236	28	13	26	32	1.93
4513364--4513551	101	1.9	101	84	4	254	28	13	26	32	1.93
4521624--4521923	33	8.4	33	64	23	108	34	26	17	22	1.95
4521613--4521822	75	2.8	75	87	2	287	32	26	18	22	1.97
4521726--4521955	102	2.3	102	88	0	334	32	26	17	23	1.97
4524488--4524552	34	1.9	34	96	0	121	26	20	9	44	1.81
4525657--4525776	60	2.0	60	91	0	195	32	22	18	26	1.97
4535557--4535603	24	1.9	25	83	12	62	31	8	19	40	1.81
4535700--4535747	18	2.6	18	83	6	60	50	2	4	43	1.33
4536359--4536388	14	2.1	14	93	0	51	16	43	0	40	1.48
4540894--4541041	50	3.0	50	82	7	167	33	12	11	42	1.79
4545589--4545736	50	3.0	50	82	7	167	33	12	11	42	1.79
4554720--4554765	23	2.0	24	91	4	76	41	10	6	41	1.66
4566853--4566964	25	4.5	25	81	0	143	31	25	21	21	1.98
4566945--4567009	25	2.6	25	82	2	87	40	13	21	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4572253--4572287	17	2.1	17	100	0	70	22	22	22	31	1.98
4581732--4581909	27	6.6	27	83	3	205	26	15	28	29	1.96
4581733--4581888	82	1.9	81	88	3	233	26	15	28	29	1.96
4581729--4581909	82	2.2	81	83	2	229	27	15	27	29	1.96
4586935--4587018	41	2.0	41	100	0	168	40	11	16	30	1.85
4590456--4590633	27	6.6	27	84	3	205	29	28	15	26	1.96
4590477--4590632	82	1.9	81	88	3	233	29	28	15	26	1.96
4600722--4600995	137	2.0	137	97	0	512	27	21	9	41	1.84
4601200--4601250	23	2.2	23	89	0	75	29	9	19	41	1.84
4602802--4603066	50	5.3	50	84	2	286	22	30	21	25	1.98
4602996--4603088	48	1.9	48	82	4	116	24	27	21	25	1.99
4605770--4605847	39	2.0	39	100	0	156	28	7	15	48	1.72
4606144--4606192	23	2.1	23	88	0	71	36	8	16	38	1.78
4610130--4610307	27	6.6	27	84	3	205	29	28	15	26	1.96
4610151--4610306	82	1.9	81	88	3	233	29	28	15	26	1.96
4618192--4618369	27	6.6	27	84	3	205	29	28	15	26	1.96
4618213--4618368	82	1.9	81	88	3	233	29	28	15	26	1.96
4623417--4623469	26	2.3	23	76	20	56	16	5	1	75	1.08
4624931--4624970	18	2.3	18	82	4	55	10	17	2	70	1.27
4629290--4629314	10	2.5	10	100	0	50	8	12	24	56	1.62
4632014--4632071	29	2.0	30	82	3	73	39	1	3	55	1.27
4632064--4632128	15	4.2	15	73	17	53	47	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4638566--4638606	16	2.5	16	84	4	55	65	2	0	31	1.05
4640868--4641071	88	2.3	88	80	5	241	36	7	7	48	1.61
4641053--4641206	72	2.1	74	88	8	235	33	11	11	44	1.75
4643062--4643086	3	8.3	3	100	0	50	0	0	68	32	0.90
4650717--4650763	20	2.4	19	86	10	60	38	10	0	51	1.37
4653447--4653624	27	6.6	27	77	6	137	30	28	15	25	1.96
4653447--4653624	54	3.3	54	78	7	164	30	28	15	25	1.96
4657765--4657896	61	2.2	57	81	5	147	42	5	3	48	1.43
4660372--4660477	24	4.2	24	67	17	81	34	0	2	62	1.10
4660349--4660493	76	1.9	73	94	4	254	37	0	2	58	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161