genome.fa.s22.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  154  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47975629--47975788	80	2.0	80	98	0	311	31	11	13	43	1.79
47980815--47980872	13	4.5	13	74	6	55	51	10	5	32	1.58
47981399--47981452	26	2.1	26	86	6	74	25	22	20	31	1.98
47983355--47983400	15	3.4	14	77	19	53	58	13	0	28	1.35
47984313--47984689	125	3.0	123	87	2	531	37	21	10	30	1.87
47988649--47988679	15	2.1	15	100	0	62	51	6	22	19	1.69
47998220--47998291	25	2.9	25	70	4	65	30	18	27	23	1.97
47998257--47998348	25	3.8	24	73	5	69	30	22	27	19	1.98
48000664--48000904	41	5.9	41	84	4	292	30	22	25	21	1.99
48000664--48000904	123	2.0	121	85	6	326	30	22	25	21	1.99
48001062--48001139	14	5.9	14	70	15	58	29	1	21	47	1.59
48001425--48001476	21	2.5	21	90	6	79	17	0	38	44	1.49
48001425--48001484	7	8.6	7	77	14	61	18	1	36	43	1.60
48001425--48001484	21	2.9	21	85	5	68	18	1	36	43	1.60
48001440--48001494	28	2.0	28	85	0	74	21	1	32	43	1.63
48001446--48001492	21	2.2	21	84	0	58	21	2	29	46	1.63
48001850--48001998	81	1.9	81	92	1	255	36	14	23	24	1.93
48006319--48006655	183	1.8	183	96	0	629	27	16	13	41	1.87
48007061--48007118	9	6.1	9	76	11	62	48	22	0	29	1.51
48012655--48012696	21	2.0	21	85	0	57	30	19	50	0	1.48
48012993--48013094	43	2.4	43	86	0	150	33	18	18	29	1.95
48013078--48013313	43	5.4	43	83	7	294	19	19	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48018872--48019047	46	3.8	45	75	11	178	22	20	28	28	1.99
48018868--48019039	93	1.8	93	90	2	274	22	20	29	27	1.99
48023519--48023649	47	2.8	48	89	3	203	22	17	28	31	1.97
48023522--48023668	47	3.1	46	78	14	142	23	16	27	32	1.96
48024799--48024983	40	4.7	40	81	7	200	24	23	27	24	2.00
48024799--48024983	79	2.3	81	82	7	218	24	23	27	24	2.00
48024852--48025016	79	2.1	79	83	6	201	26	21	27	24	1.99
48026623--48026647	6	4.2	6	100	0	50	64	36	0	0	0.94
48032704--48032798	20	4.8	20	70	8	68	10	28	21	40	1.86
48032692--48032798	40	2.7	38	71	9	97	11	28	20	40	1.87
48034362--48034413	23	2.3	23	80	3	70	26	5	21	46	1.74
48037218--48037247	15	1.9	16	93	6	53	56	0	0	43	0.99
48045069--48045179	20	5.6	19	72	9	87	36	19	29	13	1.90
48045064--48045179	40	2.9	40	84	2	135	37	21	28	12	1.91
48048635--48048698	25	2.6	25	87	5	85	25	20	23	31	1.98
48051441--48051608	40	4.2	40	89	0	221	25	29	21	23	1.99
48051442--48051661	80	2.8	79	79	4	201	25	28	21	24	1.99
48054362--48054409	17	2.7	19	84	9	57	10	6	2	81	0.95
48057103--48057159	27	2.2	26	83	3	69	15	21	21	42	1.89
48059772--48059819	15	3.1	15	88	11	71	47	0	33	18	1.49
48059875--48060133	131	2.0	131	91	0	419	35	13	20	30	1.92
48061870--48062173	96	3.2	96	98	0	581	33	18	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48061870--48062182	32	9.8	32	87	0	437	34	19	22	24	1.96
48062178--48062243	26	2.5	26	82	0	78	34	24	21	19	1.96
48062233--48062290	27	2.1	27	84	12	75	34	18	24	22	1.96
48062369--48062448	24	3.3	24	92	0	124	51	23	2	22	1.60
48062524--48062858	27	12.4	27	83	1	339	25	21	18	34	1.96
48062767--48062941	81	2.2	81	83	2	217	24	17	18	40	1.91
48062809--48062961	81	1.9	81	88	0	234	21	13	22	43	1.87
48062797--48062961	27	6.1	27	81	2	188	22	13	20	43	1.87
48065620--48065731	57	2.0	57	90	0	179	44	11	20	23	1.84
48066007--48066158	51	3.0	51	82	4	200	25	13	28	32	1.94
48066022--48066153	50	2.6	50	86	3	176	25	13	28	33	1.93
48072076--48072311	41	5.8	41	90	0	366	20	27	16	35	1.94
48072076--48072309	82	2.9	82	96	0	416	20	26	16	35	1.94
48075798--48076357	138	4.1	138	89	2	824	41	8	5	45	1.57
48082024--48082065	21	2.0	21	90	0	66	7	47	4	40	1.52
48085147--48085185	18	2.2	18	100	0	78	58	5	10	25	1.51
48085444--48085476	5	6.6	5	86	13	50	81	0	15	3	0.80
48085632--48085672	3	13.7	3	100	0	82	34	0	31	34	1.58
48086117--48086626	42	12.2	42	84	3	535	37	22	17	22	1.94
48087608--48087652	20	2.2	21	84	11	58	6	13	6	73	1.24
48090328--48090355	14	2.0	14	100	0	56	21	21	14	42	1.88
48104567--48104733	42	4.0	41	79	11	180	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48107799--48107873	28	2.7	28	95	0	132	30	25	20	24	1.98
48108108--48108201	32	2.9	32	70	6	82	32	22	24	20	1.97
48108232--48108337	32	3.3	32	79	0	122	33	23	22	19	1.97
48108091--48108311	110	2.0	110	100	0	442	35	21	22	20	1.96
48108226--48108372	64	2.3	64	86	0	195	35	25	21	17	1.95
48108263--48108367	32	3.3	32	83	0	138	38	23	20	18	1.93
48108650--48108741	27	3.4	27	80	8	82	25	21	14	39	1.91
48108652--48108873	81	2.7	81	79	5	227	24	16	16	41	1.89
48108665--48108862	27	7.3	27	79	10	190	23	17	18	40	1.90
48111817--48111903	45	2.0	44	88	0	120	36	11	24	26	1.89
48117777--48117815	20	1.9	21	89	5	62	28	2	7	61	1.37
48120722--48120772	25	2.1	24	85	10	68	56	1	0	41	1.10
48121816--48121859	3	13.3	3	82	17	52	29	38	0	31	1.58
48121815--48121856	7	6.1	7	88	5	68	28	40	0	30	1.57
48125366--48125400	2	17.5	2	100	0	70	51	0	48	0	1.00
48126138--48126176	18	2.2	18	86	9	53	71	0	5	23	1.05
48131906--48132153	130	1.9	129	87	0	361	33	15	21	29	1.94
48132061--48132290	103	2.2	102	76	11	254	36	16	20	26	1.93
48136399--48136480	42	2.0	42	90	4	130	23	26	15	34	1.95
48160910--48160960	21	2.4	21	86	0	75	35	7	31	25	1.85
48160924--48160962	18	2.2	18	85	0	51	43	5	30	20	1.73
48161666--48161707	21	2.0	21	100	0	84	38	9	14	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48161678--48161743	23	3.0	23	80	12	77	37	7	15	39	1.75
48167287--48167325	6	6.5	6	82	11	53	82	0	17	0	0.68
48168645--48168942	44	6.8	44	88	3	431	27	17	24	30	1.97
48169020--48169633	268	2.3	267	91	0	978	26	20	26	25	1.99
48169458--48169766	100	3.1	100	88	0	447	31	21	22	25	1.98
48169450--48169716	50	5.3	50	67	0	183	29	21	24	23	1.99
48169774--48170151	44	8.7	43	71	10	191	29	19	22	29	1.98
48170764--48170821	19	2.8	19	80	16	71	37	6	17	37	1.76
48170777--48170821	23	2.0	23	95	4	83	40	4	17	37	1.70
48171295--48171325	3	10.3	3	100	0	62	35	0	0	64	0.94
48172415--48172595	91	2.0	91	91	2	292	30	20	17	31	1.96
48175529--48175571	19	2.5	16	82	14	50	44	0	0	55	0.99
48175536--48175573	17	2.3	16	83	16	51	42	0	0	57	0.98
48187191--48187359	89	1.9	89	80	2	196	30	18	23	26	1.98
48187534--48187648	44	2.6	44	82	9	135	35	13	21	28	1.92
48190374--48190425	27	1.9	27	84	0	68	46	5	0	48	1.26
48191322--48191456	64	2.1	64	97	1	254	31	13	13	42	1.82
48191447--48191491	3	15.0	3	100	0	90	33	0	0	66	0.92
48191900--48191931	3	10.7	3	93	0	55	3	0	65	31	1.08
48192766--48192820	18	2.9	18	75	22	51	32	1	0	65	1.03
48200363--48200539	51	3.5	51	82	4	216	22	16	29	31	1.96
48200541--48200635	45	2.1	45	92	0	163	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48202582--48202649	16	4.2	16	78	9	75	20	11	47	20	1.81
48204513--48204591	17	4.7	17	80	1	79	21	12	46	18	1.82
48204506--48204591	34	2.6	33	81	3	100	23	12	45	18	1.84
48204513--48204612	50	2.0	51	82	9	125	25	13	44	18	1.85
48205076--48205128	23	2.3	23	81	12	65	32	13	24	30	1.93
48205368--48205885	108	4.8	107	78	5	447	38	12	18	30	1.88
48205351--48205885	54	9.9	54	75	7	385	38	12	18	30	1.88
48206003--48206084	29	2.8	28	89	7	119	45	6	32	15	1.71
48207206--48207249	17	2.6	16	79	10	52	68	0	6	25	1.14
48207514--48207547	3	11.0	3	87	6	50	61	0	2	35	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161