genome.fa.s22.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  146  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45565637--45565683	21	2.2	22	92	3	78	21	19	38	21	1.94
45568847--45568893	21	2.2	22	92	3	78	21	19	38	21	1.94
45572057--45572103	21	2.2	22	92	3	78	21	19	38	21	1.94
45574490--45574646	42	3.7	42	84	5	210	29	28	16	25	1.97
45574780--45575030	63	4.0	63	99	0	493	56	6	8	28	1.53
45579462--45579496	18	1.9	18	88	0	52	40	0	2	57	1.14
45579617--45579764	71	2.1	71	97	1	278	29	11	13	45	1.79
45580077--45580125	7	7.0	7	85	0	62	28	48	2	20	1.60
45580239--45580413	81	2.1	82	86	9	248	42	31	1	24	1.62
45580438--45580480	14	3.1	14	83	3	52	32	41	0	25	1.56
45580900--45581432	41	13.0	41	84	2	622	31	27	19	21	1.97
45587786--45587818	16	2.1	16	94	0	57	24	36	3	36	1.71
45587880--45587917	16	2.4	16	100	0	76	36	39	0	23	1.55
45592875--45592957	31	2.7	31	90	0	112	45	12	10	31	1.76
45599780--45600061	50	5.5	50	80	3	253	22	28	22	27	1.99
45603509--45603552	4	11.0	4	100	0	88	50	25	0	25	1.50
45604228--45604280	25	2.2	24	86	3	70	37	15	0	47	1.45
45605141--45605217	28	2.7	28	76	7	84	28	5	7	58	1.48
45605141--45605211	29	2.5	28	76	17	74	28	5	7	59	1.47
45626357--45626417	23	2.7	23	100	0	122	39	9	13	37	1.77
45627031--45627077	23	2.0	25	87	8	71	31	8	4	55	1.49
45627732--45628024	98	3.0	98	97	1	543	29	10	23	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45630949--45630973	3	8.3	3	100	0	50	64	0	0	36	0.94
45630972--45630996	3	8.3	3	100	0	50	36	0	0	64	0.94
45633602--45633656	17	3.3	16	78	16	58	18	5	7	69	1.32
45635106--45635185	42	1.9	42	89	0	124	18	38	22	20	1.93
45636663--45636697	9	3.9	9	84	0	52	48	14	8	28	1.73
45636961--45636996	16	2.2	16	95	0	63	44	2	22	30	1.67
45637205--45637230	5	5.2	5	100	0	52	19	19	19	42	1.90
45637522--45637584	20	3.3	19	74	19	60	58	1	1	38	1.17
45652483--45652509	9	3.0	9	100	0	54	44	0	11	44	1.39
45652579--45652620	3	14.0	3	100	0	84	66	0	0	33	0.92
45652946--45652997	25	2.1	25	96	0	95	55	7	13	23	1.63
45655835--45655906	28	2.6	28	88	0	99	33	12	25	29	1.92
45656560--45656819	23	11.1	23	77	5	243	26	14	17	42	1.87
45656560--45656878	141	2.3	142	91	2	509	26	13	17	42	1.86
45656560--45656891	71	4.7	71	85	2	445	27	13	18	40	1.88
45666274--45666476	46	4.3	48	87	7	256	35	13	21	28	1.92
45666208--45666476	98	2.7	98	92	0	448	34	14	22	28	1.93
45666440--45666545	37	2.9	37	90	2	171	36	16	21	24	1.94
45669292--45669359	34	2.0	34	100	0	136	23	23	17	35	1.95
45671853--45671949	48	2.0	48	97	0	185	35	19	18	26	1.95
45672220--45672246	9	3.0	9	100	0	54	44	0	11	44	1.39
45676722--45676755	17	2.0	17	94	0	59	32	0	32	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45677063--45677106	21	2.0	22	83	12	56	47	9	13	29	1.74
45686594--45686769	89	2.0	89	96	0	325	34	8	23	32	1.85
45700985--45701021	16	2.3	16	90	0	56	18	27	0	54	1.44
45707564--45707729	42	4.0	42	82	7	196	31	24	16	27	1.97
45707564--45707729	84	2.0	84	84	4	219	31	24	16	27	1.97
45717220--45717305	40	2.2	40	93	0	145	32	3	0	63	1.11
45717270--45717321	10	4.9	11	81	13	65	44	1	0	53	1.11
45717261--45717321	31	2.0	31	90	6	97	40	1	0	57	1.08
45720180--45720219	19	2.2	18	91	8	64	42	0	2	55	1.13
45720296--45720374	33	2.3	33	89	8	115	41	5	2	50	1.38
45720777--45720814	19	2.0	19	89	0	58	34	28	7	28	1.85
45722496--45722577	37	2.2	37	76	8	87	14	17	31	36	1.90
45724867--45724906	19	2.1	19	86	9	55	27	0	2	70	1.01
45724896--45724932	18	2.1	18	89	0	56	40	0	2	56	1.13
45724943--45724980	19	2.0	20	85	10	53	39	2	5	52	1.38
45725740--45725782	18	2.4	18	80	0	50	23	60	6	9	1.51
45725776--45725839	24	2.6	25	78	7	60	25	60	4	9	1.46
45725793--45725887	24	4.0	24	77	8	86	24	62	4	9	1.44
45725812--45725900	18	4.4	20	72	19	69	24	61	4	8	1.44
45725856--45725918	18	3.5	18	84	4	56	25	61	7	4	1.43
45725921--45725977	24	2.4	24	87	0	78	21	61	3	14	1.47
45727228--45727540	115	2.9	107	84	7	439	35	18	15	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45727425--45727449	8	3.1	8	100	0	50	52	0	0	48	1.00
45727766--45727858	17	5.4	16	74	22	66	75	1	3	20	1.01
45727773--45727859	12	6.3	14	69	20	58	74	1	3	20	1.03
45727773--45727858	15	6.1	14	70	25	58	75	1	3	19	1.01
45728517--45728547	12	2.6	12	100	0	62	0	22	48	29	1.51
45729687--45730015	132	2.5	132	89	0	496	27	23	17	31	1.97
45730050--45730274	45	5.0	45	70	10	183	23	24	23	28	1.99
45730040--45730262	44	5.0	44	69	13	170	22	23	24	29	1.99
45730038--45730274	89	2.7	89	89	1	368	22	23	24	29	1.99
45730293--45730975	50	13.7	49	69	5	350	22	22	22	31	1.99
45730278--45730984	100	7.1	100	89	1	974	23	22	22	31	1.98
45737541--45737606	33	2.0	33	87	0	96	34	4	30	30	1.78
45739058--45739091	17	1.9	18	88	5	52	58	0	2	38	1.13
45739510--45739584	25	3.2	25	78	18	106	45	16	8	30	1.75
45739523--45739590	20	3.0	21	76	19	75	45	14	5	33	1.69
45739510--45739597	45	2.0	43	95	4	158	44	15	6	32	1.73
45739947--45740055	41	2.7	41	83	0	128	30	22	19	27	1.98
45742842--45743334	107	4.5	107	93	4	842	30	15	18	35	1.92
45743034--45743058	8	3.1	8	100	0	50	48	0	0	52	1.00
45742842--45743345	222	2.3	214	93	3	857	29	16	18	35	1.93
45760182--45760217	18	1.9	18	88	5	54	47	5	25	22	1.73
45772266--45772310	17	2.6	17	79	10	56	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45772269--45772308	18	2.2	18	86	8	55	70	0	0	30	0.88
45772316--45772378	31	2.0	31	90	0	99	44	1	22	31	1.62
45779591--45779629	16	2.4	16	91	4	60	71	0	12	15	1.14
45779637--45779726	4	22.8	4	70	15	53	67	1	8	22	1.25
45781239--45781357	44	2.7	44	86	0	139	29	22	16	31	1.96
45781307--45781691	51	8.0	51	73	11	335	31	17	17	33	1.93
45781265--45781736	95	5.0	95	85	0	604	31	18	17	33	1.94
45781262--45781777	44	11.1	44	68	15	218	31	18	17	32	1.94
45786274--45786303	7	4.3	7	91	0	51	30	30	0	40	1.57
45787408--45787445	19	1.9	19	89	5	58	68	7	10	13	1.39
45794506--45794532	5	5.4	5	100	0	54	55	0	0	44	0.99
45794717--45794744	3	9.3	3	100	0	56	67	0	0	32	0.91
45795552--45795582	3	10.0	3	93	6	53	0	32	3	64	1.09
45803899--45803936	12	3.1	12	82	17	51	18	2	0	78	0.86
45803899--45803942	16	2.7	16	83	13	54	18	4	0	77	0.94
45807589--45807628	21	1.9	21	89	0	62	27	0	25	47	1.52
45809675--45809714	3	13.3	3	100	0	80	35	0	0	65	0.93
45824041--45824251	115	1.8	111	85	8	289	42	9	8	40	1.67
45824145--45824399	139	1.8	137	85	5	352	43	9	10	36	1.72
45831701--45831787	33	2.7	33	79	12	99	44	18	9	27	1.80
45831762--45831838	14	5.0	15	71	20	52	42	15	9	32	1.78
45831778--45831817	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45831766--45831832	34	1.9	35	90	3	109	46	13	8	31	1.74
45839856--45839881	5	5.2	5	100	0	52	42	19	19	19	1.90
45841578--45841647	31	2.3	31	87	0	104	51	14	7	27	1.68
45844767--45844802	3	12.0	3	100	0	72	33	33	0	33	1.58
45846439--45846500	28	2.3	26	78	13	65	48	3	1	46	1.28
45846489--45846533	17	2.8	16	83	12	56	53	6	2	37	1.40
45847799--45847842	20	2.2	20	100	0	88	43	4	18	34	1.70
45848379--45848427	24	2.2	21	89	10	71	69	0	2	28	1.00
45848796--45848892	3	33.7	3	77	10	87	67	1	27	4	1.16
45848804--45848895	8	11.5	8	75	13	57	68	1	27	3	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161