genome.fa.s22.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  74  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23190803--23190947	72	2.0	72	97	0	272	33	28	15	22	1.94
23193088--23193119	15	2.1	15	94	0	55	15	31	3	50	1.60
23194529--23194570	22	2.1	19	86	13	57	45	2	0	52	1.13
23196164--23196201	3	12.7	3	88	0	58	65	2	31	0	1.06
23198161--23198212	10	5.0	10	79	9	50	34	1	3	59	1.27
23201326--23201360	17	2.1	16	89	5	52	42	11	25	20	1.85
23205010--23205264	54	4.7	53	78	7	271	20	16	18	43	1.88
23205010--23205265	81	3.2	80	80	9	286	20	16	18	44	1.87
23205053--23205262	109	1.9	109	85	1	287	20	17	19	43	1.88
23205010--23205261	27	9.3	26	79	7	243	20	17	19	43	1.88
23205972--23206029	29	2.0	28	93	3	98	48	25	13	10	1.74
23211343--23211468	30	4.2	30	75	8	121	24	28	11	35	1.90
23214286--23214313	6	4.7	6	100	0	56	17	28	0	53	1.44
23221004--23221046	18	2.4	18	88	0	59	41	44	2	11	1.53
23221151--23221201	9	5.7	9	80	0	57	29	9	15	45	1.79
23221144--23221201	18	3.2	18	73	4	55	31	10	15	43	1.80
23226558--23226730	26	6.7	26	81	6	172	39	19	13	27	1.89
23226558--23226730	52	3.3	51	83	7	208	39	19	13	27	1.89
23226558--23226730	78	2.2	78	86	0	229	39	19	13	27	1.89
23227137--23227215	33	2.6	28	80	9	77	21	24	25	29	1.99
23238139--23238176	13	3.0	13	84	3	51	81	2	15	0	0.80
23249014--23249074	31	2.0	30	84	9	79	36	14	6	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23249218--23249267	25	2.0	25	84	7	66	24	18	24	34	1.96
23249690--23249731	22	1.9	23	90	9	70	47	14	0	38	1.44
23271631--23271671	22	1.9	21	85	5	55	36	31	0	31	1.58
23272305--23272343	19	2.1	19	85	0	51	38	2	0	58	1.12
23277877--23278024	72	2.0	73	92	1	244	40	11	14	33	1.82
23279986--23280029	22	2.0	22	95	4	81	40	9	18	31	1.81
23293219--23293488	130	2.1	130	91	2	436	29	12	12	45	1.79
23301158--23301261	29	3.6	29	71	6	93	36	20	17	25	1.94
23304528--23304720	50	3.8	50	88	0	269	21	30	22	26	1.99
23313773--23313816	22	2.0	22	95	0	79	47	4	2	45	1.35
23316119--23316275	43	3.7	43	75	13	121	33	26	17	23	1.96
23323054--23323158	29	3.6	29	73	6	95	34	20	17	28	1.95
23327577--23327606	3	10.0	3	100	0	60	33	0	0	66	0.92
23333953--23333982	13	2.3	13	94	0	51	63	0	0	36	0.95
23333955--23333993	19	2.1	18	90	4	60	64	0	2	33	1.08
23338210--23338415	111	1.9	111	88	0	313	31	15	21	31	1.95
23339121--23339150	15	2.0	15	93	0	51	50	6	6	36	1.55
23340182--23340235	28	2.0	26	89	7	81	50	0	1	48	1.11
23340842--23340882	22	1.9	22	85	5	57	53	0	0	46	1.00
23347025--23347070	21	2.2	21	88	0	65	26	23	36	13	1.91
23352455--23352509	27	2.0	27	89	0	83	41	1	12	43	1.53
23354162--23354554	54	7.3	54	81	3	375	27	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23354164--23354545	161	2.4	162	82	3	457	27	21	14	36	1.93
23354162--23354552	108	3.6	108	80	6	443	27	21	15	36	1.93
23354176--23354584	215	1.9	215	81	3	500	27	21	15	36	1.93
23354590--23354742	23	6.6	22	65	14	76	37	19	9	32	1.85
23354593--23354715	47	2.6	47	88	0	183	40	18	8	32	1.80
23354703--23354749	22	2.1	22	92	0	76	34	23	10	31	1.89
23354732--23354841	24	4.6	24	77	4	96	37	17	10	34	1.85
23354678--23354851	72	2.5	69	78	4	179	36	18	9	35	1.84
23355230--23355256	14	1.9	14	100	0	54	55	7	0	37	1.28
23356389--23356427	19	2.1	19	95	4	71	43	10	17	28	1.82
23359819--23359872	22	2.5	21	93	3	90	50	7	0	42	1.30
23359819--23359879	21	2.8	20	83	9	68	52	6	0	40	1.27
23360082--23360116	3	11.7	3	100	0	70	31	0	0	68	0.90
23360443--23360616	93	1.9	94	85	3	244	44	8	16	31	1.77
23361344--23361389	19	2.3	20	77	3	58	58	13	0	28	1.35
23361333--23361389	19	3.1	19	73	11	57	63	10	0	26	1.27
23361474--23361510	14	2.6	14	86	0	56	48	0	10	40	1.38
23366981--23367047	18	3.5	18	68	11	53	52	0	2	44	1.16
23369443--23369499	3	19.0	3	100	0	114	66	0	0	33	0.92
23369964--23370127	17	9.8	15	67	23	64	45	11	12	31	1.77
23369996--23370156	17	9.2	19	71	16	109	45	10	11	31	1.75
23370099--23370178	17	4.5	17	69	14	54	41	12	15	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23370171--23370226	17	3.2	17	69	14	51	41	5	14	39	1.68
23370080--23370192	55	2.1	55	86	6	158	42	11	14	31	1.81
23370169--23370232	18	3.6	18	78	6	76	42	4	14	39	1.66
23370523--23370564	5	8.2	5	84	5	57	61	0	0	38	0.96
23370750--23370805	20	2.7	21	84	10	71	0	21	0	78	0.75
23370743--23370793	24	2.0	27	88	11	81	0	25	0	74	0.82
23370759--23370799	17	2.5	16	84	7	55	0	24	0	75	0.80
23370859--23370895	19	1.9	19	88	0	56	2	27	40	29	1.70
23371053--23371094	22	1.9	22	85	9	59	2	38	0	59	1.10
23371602--23371683	30	2.8	30	84	1	121	42	2	20	34	1.65
23371903--23372260	76	4.6	76	86	5	464	37	18	17	26	1.93
23373621--23373804	79	2.3	81	82	11	222	25	27	22	25	2.00
23373621--23373804	40	4.6	41	83	12	199	25	27	22	25	2.00
23375413--23375935	79	6.8	79	83	6	522	35	19	16	29	1.93
23375410--23375922	155	3.3	157	81	6	561	34	19	16	29	1.94
23376785--23376847	6	10.5	6	81	13	67	1	3	12	82	0.86
23376803--23376846	9	4.9	9	86	8	63	0	0	18	81	0.68
23378830--23379051	107	2.1	107	96	0	408	52	11	18	18	1.74
23389276--23389300	11	2.3	11	100	0	50	28	12	32	28	1.92
23390810--23391062	18	14.4	17	73	16	155	42	11	13	32	1.80
23390810--23391062	17	14.4	16	72	16	141	42	11	13	32	1.80
23390810--23391050	35	6.8	35	75	11	197	43	11	13	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23391566--23391625	11	5.6	11	68	7	52	0	20	0	80	0.72
23391681--23391717	19	1.9	19	88	0	56	0	27	40	32	1.57
23391856--23391917	7	9.0	7	78	3	63	0	24	0	75	0.80
23391856--23391918	14	4.6	14	84	4	74	0	25	0	74	0.82
23392025--23392057	9	3.8	9	88	4	50	0	21	0	78	0.75
23393064--23393237	72	2.5	69	81	10	194	45	1	3	49	1.29
23393209--23393265	21	2.8	20	80	12	64	47	0	1	50	1.11
23393217--23393269	18	2.8	18	82	8	61	50	0	0	49	1.00
23393224--23393290	31	2.2	30	84	7	91	43	0	1	55	1.09
23393223--23393269	11	4.7	10	77	17	53	46	0	0	53	1.00
23393342--23393375	17	1.9	18	88	5	52	55	0	5	38	1.24
23395246--23395299	27	2.0	27	96	0	99	24	20	11	44	1.83
23397397--23397544	42	3.5	42	85	0	152	16	19	18	45	1.85
23397447--23397546	21	4.8	21	75	2	76	15	22	19	44	1.87
23400548--23400588	21	2.0	21	95	0	73	41	0	9	48	1.36
23405976--23406145	92	1.8	92	82	5	218	24	17	24	33	1.96
23408673--23408710	17	2.3	16	83	16	51	78	5	13	2	1.02
23423241--23423284	5	8.8	5	94	0	61	40	6	18	34	1.77
23423870--23424002	66	2.0	66	88	4	198	47	18	24	9	1.78
23424514--23424569	28	2.0	28	96	0	103	44	3	23	28	1.70
23426544--23426666	65	1.9	65	91	3	203	45	17	26	11	1.81
23427194--23427232	5	7.8	5	100	0	78	41	0	17	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23430489--23430599	51	2.2	51	83	8	145	28	18	8	44	1.79
23431100--23431146	24	2.0	24	100	0	94	23	8	29	38	1.84
23435764--23435796	13	2.5	13	95	5	57	9	0	15	75	1.03
23446455--23446496	21	2.0	21	95	0	75	42	7	7	42	1.59
23457946--23458123	27	6.6	27	83	5	180	29	28	15	27	1.96
23457967--23458122	82	1.9	81	86	3	224	28	28	15	27	1.96
23462694--23462747	19	2.8	19	97	0	99	37	9	16	37	1.81
23462884--23462958	38	1.9	38	89	5	114	58	6	20	14	1.58
23467819--23467851	11	3.0	11	95	0	57	87	0	12	0	0.53
23467819--23467851	6	5.8	6	86	13	52	87	0	12	0	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161