genome.fa.s22.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  137  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42649964--42650275	153	2.0	155	98	1	601	31	25	21	21	1.98
42650462--42650781	160	2.0	159	98	1	615	41	10	15	33	1.80
42651626--42651996	205	1.8	205	92	0	625	27	23	21	27	1.99
42651868--42652038	90	1.9	90	83	0	225	27	25	19	27	1.99
42651836--42652124	44	6.6	44	75	7	216	26	23	22	27	1.99
42651835--42652084	134	1.9	133	82	2	313	26	24	22	27	1.99
42666394--42666468	20	3.8	19	75	8	71	44	13	9	33	1.76
42669966--42670002	16	2.3	16	100	0	74	24	0	35	40	1.55
42670128--42670288	47	3.6	46	69	18	140	48	3	3	45	1.34
42672092--42672147	22	2.5	22	97	2	103	33	17	14	33	1.90
42696584--42697288	355	2.0	355	92	0	1169	34	14	23	28	1.93
42698525--42698557	17	1.9	17	100	0	66	42	6	24	27	1.78
42716350--42716394	22	2.0	24	91	8	76	53	0	22	24	1.46
42717505--42717653	75	2.0	74	93	0	244	24	24	23	26	1.99
42725858--42725889	16	2.0	17	88	11	50	31	3	0	65	1.08
42735816--42735861	4	11.5	4	100	0	92	50	26	0	23	1.50
42739722--42739794	25	2.9	24	76	15	76	21	21	20	35	1.96
42741820--42741874	24	2.3	24	93	0	92	29	16	5	49	1.68
42763053--42763079	3	9.0	3	100	0	54	33	33	0	33	1.58
42763878--42763906	15	1.9	15	100	0	58	55	0	20	24	1.44
42766938--42767033	50	1.9	50	86	0	138	36	14	20	28	1.92
42772029--42772072	18	2.3	19	84	7	63	50	0	6	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42773342--42773387	15	2.9	17	78	15	55	41	0	13	45	1.43
42783015--42783048	6	5.7	6	100	0	68	70	0	0	29	0.87
42787760--42787824	17	3.8	17	83	2	67	33	4	13	47	1.64
42787990--42788277	124	2.3	126	82	3	321	28	14	23	32	1.95
42792118--42792243	62	2.0	62	100	0	252	33	23	4	38	1.76
42792295--42792339	10	4.5	10	80	0	54	48	20	2	28	1.61
42801441--42801493	20	2.5	22	81	6	65	22	16	18	41	1.90
42802251--42802295	10	4.5	10	80	0	54	48	20	2	28	1.61
42802764--42802788	8	3.1	8	100	0	50	48	24	0	28	1.52
42807097--42807145	18	3.1	15	76	18	55	55	2	0	42	1.11
42807099--42807141	18	2.4	18	88	0	68	48	2	0	48	1.14
42807681--42807718	20	1.9	20	84	10	51	47	2	13	36	1.56
42816625--42816769	41	3.5	40	87	1	200	26	20	28	24	1.99
42817551--42817650	39	2.6	39	90	0	146	34	3	20	43	1.67
42817616--42817664	16	2.9	17	82	8	57	38	4	20	36	1.72
42819873--42819922	22	2.3	22	80	12	59	14	2	16	68	1.31
42823034--42823198	28	5.9	28	85	2	181	33	18	22	26	1.96
42824893--42824962	22	3.3	20	71	21	70	30	22	12	34	1.92
42824905--42824969	22	2.9	23	68	25	66	27	23	10	38	1.88
42832810--42832836	3	9.0	3	100	0	54	33	33	33	0	1.58
42836396--42836464	32	2.2	32	97	0	129	40	17	2	39	1.64
42847704--42847750	20	2.3	20	85	0	67	21	12	36	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42848892--42848999	51	2.1	53	89	3	166	38	13	14	32	1.86
42849983--42850069	37	2.4	37	84	3	113	39	17	22	20	1.92
42850278--42850329	22	2.3	23	83	3	70	57	13	0	28	1.36
42850300--42850379	37	2.2	37	81	2	90	51	10	1	37	1.44
42851774--42851899	58	2.2	58	88	2	182	53	3	0	43	1.16
42851761--42851927	58	2.9	56	82	8	169	53	2	1	41	1.23
42855836--42855931	47	2.0	47	93	0	165	46	8	5	39	1.56
42858033--42858083	25	2.0	25	100	0	102	49	19	7	23	1.74
42859160--42859203	21	2.1	21	95	0	79	34	9	11	45	1.72
42861145--42861182	18	2.2	18	90	9	62	71	0	5	23	1.07
42865465--42865502	20	1.9	20	89	10	60	63	10	15	10	1.52
42865846--42865875	3	10.0	3	100	0	60	66	0	0	33	0.92
42872724--42872787	17	3.6	17	72	15	58	26	14	14	45	1.82
42872716--42872786	36	2.0	36	94	0	124	25	14	15	45	1.84
42872716--42872769	17	3.0	18	71	17	58	24	14	16	44	1.85
42877338--42877362	13	1.9	13	100	0	50	8	0	24	68	1.16
42878338--42878670	114	2.9	114	92	1	551	40	3	13	41	1.62
42878821--42878851	15	2.1	15	100	0	62	32	6	25	35	1.82
42879169--42879277	41	2.7	40	91	5	173	27	17	30	24	1.97
42880611--42880681	36	2.0	36	91	0	115	26	14	14	45	1.82
42881634--42881704	37	1.9	37	82	5	90	42	14	1	42	1.54
42882138--42882187	24	2.0	25	84	7	66	44	24	0	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42884086--42884122	16	2.3	17	86	13	60	62	0	0	37	0.96
42891484--42891871	9	42.3	9	75	3	344	31	2	17	48	1.61
42891484--42891847	27	13.3	27	85	3	451	31	1	17	49	1.58
42891484--42891789	82	3.7	82	100	0	612	31	1	18	48	1.59
42892076--42892113	16	2.4	16	91	4	60	52	5	0	42	1.24
42892110--42892137	13	2.2	13	100	0	56	46	7	7	39	1.59
42892106--42892155	17	3.2	17	81	18	72	52	6	6	36	1.51
42893137--42893191	30	1.9	29	82	10	69	58	9	3	29	1.46
42895618--42895666	15	3.3	15	76	23	59	36	46	2	14	1.56
42895621--42895690	15	5.0	14	72	20	58	37	44	1	17	1.57
42895621--42895690	28	2.5	28	84	11	90	37	44	1	17	1.57
42895851--42895913	7	8.9	7	81	11	58	33	50	0	15	1.45
42895854--42895912	14	4.2	14	78	8	66	32	50	0	16	1.46
42895830--42895943	42	2.7	42	79	2	131	41	39	0	19	1.51
42896595--42896880	114	2.5	114	78	8	287	33	23	15	27	1.95
42897765--42898120	87	4.1	87	99	0	694	28	10	14	47	1.77
42900716--42900755	16	2.5	16	83	0	53	82	2	12	2	0.87
42900716--42900756	21	2.0	21	85	0	55	80	2	12	4	0.97
42901685--42901727	3	14.3	3	80	9	52	39	0	0	60	0.97
42901685--42901728	15	2.9	15	83	10	63	40	0	0	59	0.98
42901872--42901944	26	2.7	28	80	4	87	35	4	5	54	1.42
42903472--42904178	29	23.9	29	85	6	909	33	1	21	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42903931--42903955	5	5.0	5	100	0	50	60	0	0	40	0.97
42905341--42905379	7	5.6	7	100	0	78	58	12	0	28	1.34
42906337--42906369	15	2.3	15	89	5	50	66	6	0	27	1.15
42906468--42906523	29	2.0	29	89	10	89	58	1	0	39	1.08
42906556--42906608	22	2.4	21	87	9	79	32	0	32	35	1.58
42906561--42906660	52	1.9	52	89	0	155	37	0	32	31	1.58
42906613--42906668	22	2.5	22	97	2	103	41	0	30	28	1.57
42910537--42910589	16	3.2	17	71	10	56	52	1	0	45	1.11
42910513--42910595	32	2.4	35	86	11	109	48	2	1	48	1.22
42914190--42914313	41	3.0	40	90	4	169	25	20	30	23	1.98
42914203--42914328	41	3.1	41	89	0	180	28	19	29	22	1.98
42927021--42927092	35	2.1	35	100	0	144	26	20	25	27	1.99
42927449--42927489	21	1.9	22	90	5	66	65	14	7	12	1.45
42928274--42928389	58	2.0	58	98	0	223	33	10	6	50	1.61
42936404--42936437	7	4.9	7	100	0	68	44	0	41	14	1.45
42939429--42939458	15	2.0	15	93	0	51	33	30	3	33	1.74
42940869--42940973	49	2.1	49	92	0	174	32	6	9	51	1.60
42946554--42946621	24	2.8	24	81	0	73	50	0	32	17	1.47
42946806--42946887	39	2.1	40	93	2	139	47	8	20	23	1.77
42958748--42958787	20	2.1	19	85	4	53	55	0	2	42	1.13
42960212--42960241	15	2.0	15	100	0	60	60	6	0	33	1.23
42960383--42960418	14	2.6	14	100	0	72	72	5	0	22	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42961488--42962725	44	28.2	44	64	12	315	26	24	19	29	1.98
42961501--42962138	133	4.8	133	87	2	887	26	24	19	29	1.98
42962037--42962225	87	2.2	87	85	1	254	26	25	19	28	1.99
42962124--42962723	131	4.6	131	88	0	858	26	25	19	28	1.98
42961904--42962349	219	2.0	220	87	1	635	27	25	19	28	1.99
42963213--42963426	108	2.0	108	86	0	302	50	10	14	25	1.74
42967994--42968055	31	2.0	31	93	0	106	33	27	17	20	1.96
42973461--42973514	1	54.0	1	77	0	54	1	5	3	88	0.67
42973460--42973515	11	5.1	11	84	6	60	5	5	3	85	0.81
42978489--42978518	15	2.0	15	93	0	51	56	6	3	33	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161