genome.fa.s22.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  122  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38650154--38650196	11	3.8	11	87	6	59	69	2	0	27	1.00
38651426--38651466	19	2.2	19	95	4	75	60	0	17	21	1.35
38664586--38664618	17	2.0	17	88	5	50	39	0	0	60	0.97
38669749--38669777	2	14.5	2	100	0	58	51	0	0	48	1.00
38671669--38671750	43	1.9	43	89	0	128	31	14	20	32	1.93
38672231--38672256	13	2.0	13	100	0	52	0	15	0	84	0.62
38681486--38681588	54	1.9	54	82	4	127	28	30	27	14	1.95
38684704--38684744	20	2.0	21	86	13	59	26	9	0	63	1.25
38690119--38690160	21	2.0	21	85	0	57	66	9	0	23	1.21
38690172--38690216	13	3.3	13	87	6	63	82	0	17	0	0.68
38691450--38691629	44	4.1	44	71	9	132	32	18	22	26	1.97
38691798--38692426	45	13.7	44	75	10	370	32	18	20	28	1.96
38691795--38692376	94	6.4	90	72	12	278	32	18	20	28	1.96
38691795--38692427	320	2.0	317	84	5	821	32	18	20	28	1.96
38692780--38692820	21	1.9	22	90	5	66	41	36	14	7	1.74
38693931--38693977	22	2.1	22	84	7	60	19	0	4	76	0.95
38693991--38694031	20	2.0	21	86	13	59	26	9	0	63	1.25
38696315--38696382	21	3.2	21	76	0	64	22	5	51	20	1.68
38696378--38696424	24	2.0	24	100	0	94	14	4	59	21	1.52
38701706--38701809	44	2.4	44	86	3	138	26	24	22	26	2.00
38702429--38702640	108	2.0	108	82	1	264	47	8	16	27	1.76
38710757--38711249	248	2.0	247	93	0	842	19	23	12	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38715338--38715381	5	8.6	5	80	5	52	77	2	4	15	1.04
38725365--38725429	29	2.2	30	94	2	114	1	12	15	70	1.23
38725365--38725429	9	6.8	9	75	10	58	1	12	15	70	1.23
38725365--38725429	20	3.4	18	75	12	58	1	12	15	70	1.23
38728482--38728559	41	1.9	41	91	0	129	39	19	14	26	1.89
38729481--38729530	15	3.2	14	77	22	55	0	28	0	72	0.86
38731163--38731216	28	1.9	28	81	7	65	35	12	12	38	1.82
38733951--38734091	73	1.9	73	85	2	194	26	16	23	33	1.96
38734194--38734455	69	3.8	68	81	3	240	35	13	21	29	1.92
38740833--38740903	37	1.9	37	94	0	124	40	21	21	16	1.91
38741554--38741607	20	2.7	20	85	5	74	59	11	5	24	1.53
38741828--38741903	20	3.8	19	77	17	66	50	5	18	26	1.68
38741957--38742014	20	2.8	21	79	10	66	51	10	17	20	1.74
38741962--38742125	39	4.2	39	75	8	154	53	7	17	21	1.69
38741982--38742126	20	7.3	20	74	9	102	53	6	17	22	1.67
38742274--38742315	18	2.4	18	80	15	52	33	0	0	66	0.92
38742482--38742673	20	9.6	20	75	14	121	56	7	15	21	1.63
38742561--38742592	11	2.9	11	90	0	55	78	0	3	18	0.89
38742492--38742752	20	13.0	21	69	18	103	58	6	15	19	1.59
38742684--38742731	22	2.2	22	85	7	62	66	4	12	16	1.39
38742676--38742731	22	2.7	19	75	17	58	64	5	14	16	1.46
38743197--38743274	20	3.8	20	76	15	79	52	8	19	19	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38743223--38743294	20	3.7	20	81	5	76	48	9	23	18	1.77
38750789--38750833	18	2.6	17	86	13	58	48	33	2	15	1.57
38751224--38751264	19	2.2	19	100	0	82	51	9	9	29	1.67
38751318--38751392	20	3.8	20	77	11	68	62	2	9	25	1.38
38751317--38751415	20	5.0	20	70	18	55	60	2	13	24	1.43
38751775--38751827	3	18.3	3	78	7	56	73	1	24	0	0.93
38752023--38752057	3	11.7	3	100	0	70	31	0	0	68	0.90
38752544--38752615	26	2.7	26	82	8	92	43	9	0	47	1.36
38752664--38752764	27	3.7	27	82	5	116	26	27	27	17	1.98
38752986--38753020	3	11.7	3	100	0	70	0	0	31	68	0.90
38753772--38753816	18	2.5	18	74	0	54	31	8	46	13	1.74
38758000--38758827	160	5.2	161	70	13	718	29	12	8	50	1.68
38757913--38759021	320	3.5	320	96	0	1997	29	12	8	49	1.69
38758949--38759555	303	2.0	303	98	0	1169	30	14	12	42	1.84
38760158--38760234	21	3.6	21	72	19	61	0	28	0	71	0.86
38760184--38760313	4	32.0	4	72	21	85	0	30	0	70	0.88
38760160--38760309	39	3.7	42	76	21	153	0	30	0	70	0.88
38760177--38760314	18	7.3	18	70	21	88	0	31	0	68	0.90
38760357--38760423	27	2.5	27	95	0	116	14	26	29	28	1.96
38760474--38760498	13	1.9	13	100	0	50	0	0	12	88	0.53
38769875--38770003	43	3.0	42	76	17	138	31	28	17	22	1.97
38777194--38777236	18	2.4	18	80	7	52	34	6	4	53	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38777466--38777505	14	2.9	14	88	0	62	32	5	17	45	1.70
38777474--38777540	34	1.9	35	87	3	100	34	7	10	47	1.66
38785798--38785871	35	2.1	35	94	0	130	18	13	27	40	1.88
38789966--38790029	17	3.8	17	81	8	76	17	3	7	71	1.22
38791422--38791463	16	2.5	17	84	7	59	2	16	2	78	0.96
38805658--38805690	16	2.1	16	94	0	57	54	0	33	12	1.37
38805783--38805812	14	2.1	14	100	0	60	40	6	13	40	1.71
38805946--38806002	29	2.1	28	81	15	66	43	8	14	33	1.76
38806178--38806316	28	5.1	28	70	17	105	35	0	20	43	1.53
38806178--38806323	79	1.9	78	88	1	220	34	0	21	43	1.53
38816178--38816214	12	3.0	12	88	4	56	51	0	27	21	1.48
38816840--38816894	14	4.2	14	75	17	64	40	5	5	49	1.49
38816859--38816911	24	2.2	24	86	6	72	39	5	7	47	1.56
38818449--38818545	52	1.9	52	93	4	171	35	13	10	41	1.78
38820947--38820981	14	2.5	14	95	0	61	34	20	5	40	1.76
38821622--38821663	6	7.0	6	84	10	59	35	35	28	0	1.58
38822235--38822527	62	4.7	62	91	2	421	49	9	5	35	1.60
38824111--38824297	101	1.8	102	87	3	279	22	16	28	32	1.96
38824108--38824297	51	3.7	51	83	2	231	22	16	28	32	1.95
38824304--38824392	45	2.0	45	91	4	144	26	17	22	32	1.97
38824492--38824547	21	2.7	21	80	0	67	26	10	35	26	1.89
38836149--38836382	62	3.7	62	91	2	342	35	7	8	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38837559--38837586	14	2.0	14	100	0	56	35	7	21	35	1.81
38838901--38838930	2	15.5	2	93	6	53	53	0	0	46	1.00
38840752--38840824	34	2.1	34	80	14	80	46	0	5	47	1.25
38857217--38857254	12	3.2	12	92	0	58	44	10	5	39	1.61
38857644--38857760	35	3.3	35	70	13	89	31	17	22	29	1.96
38857644--38857798	70	2.2	70	82	8	174	30	19	21	27	1.98
38858739--38858844	53	2.0	53	98	1	205	50	16	7	24	1.71
38868139--38868168	14	2.1	15	93	6	53	53	0	13	33	1.40
38870370--38870610	128	1.9	128	86	0	338	25	25	19	29	1.99
38870602--38871229	88	7.2	87	87	2	755	22	26	23	27	2.00
38870731--38870869	44	3.2	43	62	11	102	22	25	27	24	2.00
38872323--38872417	42	2.3	42	84	0	127	29	28	10	31	1.90
38873387--38873427	15	2.7	15	84	0	55	2	24	0	73	0.96
38873384--38873426	22	2.0	22	86	4	61	2	25	0	72	0.97
38873384--38873432	21	2.3	21	82	6	55	4	26	0	69	1.06
38873411--38873490	40	2.0	40	82	0	97	8	12	8	70	1.35
38873462--38873504	6	7.0	6	84	5	50	6	0	13	79	0.93
38874208--38874232	12	2.1	12	100	0	50	60	8	16	16	1.58
38878170--38878199	14	2.1	15	93	6	53	53	0	13	33	1.40
38885806--38885854	25	2.0	25	87	0	71	32	18	14	34	1.91
38891716--38891749	16	2.1	16	88	0	50	11	11	8	67	1.42
38898838--38898953	37	3.3	37	68	23	90	38	2	5	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38901545--38901592	3	16.0	3	95	0	87	64	0	0	35	0.94
38904361--38904420	21	2.9	21	80	2	68	41	26	1	30	1.65
38904591--38904624	18	1.9	18	88	5	52	50	0	0	50	1.00
38909258--38909392	67	2.0	67	100	0	270	23	16	22	37	1.93
38915070--38915117	24	2.0	24	100	0	96	54	0	33	12	1.38
38915971--38916015	19	2.5	18	82	7	56	48	0	0	51	1.00
38920631--38920688	24	2.4	24	85	0	80	50	5	13	31	1.64
38922597--38922832	39	6.0	40	83	6	288	31	16	22	30	1.96
38922604--38922832	79	2.9	77	85	6	307	31	16	21	30	1.95
38922601--38922828	118	1.9	118	89	1	350	31	16	21	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161