genome.fa.s22.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  151  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47031236--47031330	9	10.6	9	73	17	81	46	17	1	34	1.56
47031211--47031285	22	3.6	21	76	23	79	45	17	1	36	1.57
47031236--47031330	16	5.3	18	75	14	81	46	17	1	34	1.56
47031210--47031329	38	3.0	38	84	10	125	47	17	0	34	1.54
47031409--47031448	16	2.5	16	91	0	71	50	22	0	27	1.50
47036991--47037036	18	2.6	18	89	0	74	28	41	26	4	1.74
47036998--47037032	9	3.9	9	92	0	61	31	42	25	0	1.55
47037280--47037676	43	9.2	42	86	6	442	16	20	33	29	1.95
47037280--47037676	129	3.1	128	86	4	521	16	20	33	29	1.95
47037774--47037816	22	2.0	22	90	0	68	41	25	20	11	1.86
47041014--47041278	102	2.6	102	100	0	530	31	16	10	41	1.83
47042068--47042168	48	2.1	48	90	0	157	55	8	26	8	1.60
47045280--47045314	16	2.2	16	90	5	54	57	17	5	20	1.60
47049807--47049836	16	1.9	16	93	6	53	40	20	13	26	1.89
47050242--47050328	45	1.9	45	97	0	165	55	8	25	11	1.63
47052367--47052405	20	2.0	20	94	0	69	48	2	7	41	1.45
47056251--47056350	3	32.3	3	78	9	94	61	4	30	5	1.36
47061679--47061727	18	2.8	18	79	14	66	34	8	0	57	1.29
47061663--47061727	35	1.9	35	84	12	91	35	7	0	56	1.28
47064659--47064724	33	2.0	33	96	0	123	27	19	33	19	1.96
47069633--47070019	87	4.5	87	91	0	598	31	20	23	24	1.98
47069649--47069786	43	3.2	42	65	11	109	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47069633--47070019	173	2.2	173	90	0	596	31	20	23	24	1.98
47070007--47070554	44	12.3	44	70	11	204	31	19	22	27	1.98
47070214--47070374	87	1.9	87	84	2	216	31	21	21	25	1.98
47070437--47070552	46	2.6	44	82	5	126	30	20	19	29	1.97
47070437--47070602	44	3.7	44	75	10	117	32	18	19	29	1.96
47072298--47072346	18	2.8	18	79	14	66	34	8	0	57	1.29
47072282--47072346	35	1.9	35	84	12	91	35	7	0	56	1.28
47074637--47074686	26	1.9	26	84	8	66	60	6	6	28	1.44
47077018--47077044	6	4.5	6	100	0	54	85	0	0	14	0.61
47084347--47084389	2	21.5	2	100	0	86	48	0	51	0	1.00
47084627--47084662	2	18.0	2	100	0	72	0	50	0	50	1.00
47084865--47084952	38	2.3	38	82	3	97	28	14	12	44	1.82
47085559--47085619	15	4.1	14	75	8	59	42	1	4	50	1.33
47088109--47088274	24	6.8	24	66	16	65	18	25	20	36	1.95
47094180--47094224	16	2.8	16	82	0	63	66	4	0	28	1.11
47096374--47096432	24	2.4	25	80	8	77	52	6	37	3	1.45
47096448--47096497	21	2.4	21	93	0	82	44	0	42	14	1.44
47099054--47099121	15	4.5	15	84	0	82	57	1	39	1	1.17
47099072--47099124	27	2.0	27	85	7	72	60	1	35	1	1.19
47110682--47110722	21	2.0	21	90	0	64	19	29	21	29	1.98
47118264--47118328	24	2.7	23	71	15	60	43	0	7	49	1.31
47121751--47121787	16	2.3	16	85	0	56	40	5	10	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47123621--47123715	44	2.1	46	84	3	122	36	6	20	36	1.78
47131217--47131362	73	2.0	73	95	0	265	44	8	16	30	1.78
47132697--47132890	101	1.9	102	94	2	345	14	22	16	45	1.84
47136091--47136125	18	2.0	17	88	5	52	54	0	0	45	0.99
47136211--47136245	18	2.0	17	88	5	52	54	0	0	45	0.99
47136074--47136295	120	1.9	120	97	0	417	48	6	1	43	1.38
47136106--47136298	61	3.2	60	68	14	171	48	6	2	43	1.41
47136109--47136292	59	3.1	59	67	17	162	48	7	1	42	1.40
47137831--47137860	3	9.7	3	92	7	51	33	0	0	66	0.92
47138236--47138271	11	3.4	10	92	7	54	44	0	0	55	0.99
47139267--47139422	81	1.9	79	97	2	294	28	14	17	39	1.89
47143531--47143567	16	2.3	16	85	0	56	40	5	10	43	1.63
47148936--47149009	30	2.5	30	84	0	103	27	43	6	22	1.78
47153575--47153650	36	2.1	36	82	4	91	56	9	5	28	1.52
47156942--47156997	16	3.7	15	76	9	53	26	0	17	55	1.43
47162503--47162537	16	2.1	17	89	5	54	20	0	17	62	1.32
47162607--47162648	21	1.9	22	85	9	59	42	0	9	47	1.36
47166230--47166262	4	8.5	4	93	6	59	75	0	0	24	0.80
47178713--47179093	192	2.0	192	95	1	683	39	16	15	28	1.89
47179738--47179852	59	1.9	59	94	0	203	40	19	13	27	1.88
47190515--47190791	27	10.3	27	88	0	376	24	21	19	34	1.96
47200092--47200128	3	12.3	3	100	0	74	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47208859--47208886	14	2.0	14	100	0	56	57	0	7	35	1.26
47220475--47220525	26	2.0	25	100	0	93	23	31	3	39	1.73
47224888--47226001	76	14.6	76	87	2	1475	27	18	20	33	1.96
47224887--47226044	227	5.1	228	84	4	1461	27	18	19	34	1.95
47226343--47226452	30	3.7	29	82	4	139	34	18	3	43	1.67
47226891--47226965	22	3.2	23	80	14	82	76	0	24	0	0.80
47226891--47226965	25	3.2	24	81	10	84	76	0	24	0	0.80
47227307--47227342	15	2.3	15	90	4	54	83	0	16	0	0.65
47227476--47227516	15	2.7	15	80	0	55	24	2	0	73	0.96
47229799--47230054	84	2.8	91	80	11	310	33	17	26	22	1.96
47229878--47230215	84	4.1	84	83	8	419	35	16	25	22	1.95
47229985--47230215	75	2.9	76	83	8	270	35	16	24	22	1.95
47231022--47231182	78	2.1	78	97	0	304	41	13	16	28	1.86
47231462--47231620	84	1.9	84	89	0	246	22	28	18	31	1.97
47233526--47233556	3	10.3	3	100	0	62	67	0	0	32	0.91
47235847--47236483	31	21.2	31	71	12	402	33	8	15	42	1.78
47235847--47236483	61	10.6	61	72	12	379	33	8	15	42	1.78
47235854--47236479	92	6.9	92	82	5	704	33	8	15	42	1.78
47236068--47236323	82	3.0	82	77	11	307	33	6	17	42	1.75
47235975--47236323	174	2.0	173	94	1	619	33	7	16	42	1.76
47236149--47236483	91	3.7	92	80	6	360	33	8	15	42	1.77
47236150--47236446	152	1.9	153	81	3	357	32	8	15	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47238132--47238186	3	18.3	3	96	0	101	65	0	1	32	1.03
47240177--47240309	30	4.5	30	83	6	164	36	18	0	44	1.56
47240177--47240309	60	2.2	60	87	1	196	36	18	0	44	1.56
47240781--47240824	19	2.2	20	80	4	54	68	0	31	0	0.90
47243003--47243143	75	1.9	75	88	2	212	38	21	11	28	1.88
47248675--47248754	29	2.8	29	98	0	151	28	10	10	51	1.68
47250846--47250902	25	2.3	25	81	6	71	71	0	21	7	1.08
47255240--47255400	23	7.0	22	75	8	144	42	36	4	16	1.70
47255240--47255396	48	3.4	45	79	13	160	43	35	5	15	1.69
47259466--47259510	18	2.5	18	82	7	56	40	17	4	37	1.70
47263419--47263496	22	3.4	22	77	15	70	39	20	24	15	1.91
47263419--47263522	25	4.4	24	80	13	110	39	21	24	15	1.91
47263419--47263508	47	2.0	44	85	10	119	38	21	24	15	1.92
47264384--47264417	17	2.1	16	88	5	50	0	26	0	73	0.83
47266198--47266252	21	2.6	21	82	0	65	29	29	30	10	1.91
47268007--47268145	46	3.0	45	90	2	197	28	23	10	36	1.89
47269630--47269684	22	2.5	21	85	11	67	27	21	18	32	1.96
47272141--47272200	21	2.8	21	83	14	70	25	23	31	20	1.98
47275660--47275714	28	1.9	29	85	3	76	34	3	1	60	1.25
47275925--47275959	13	2.7	13	100	0	70	60	0	0	40	0.97
47282032--47282123	43	2.1	43	88	4	141	39	11	33	15	1.84
47282122--47282746	312	2.0	312	100	0	1250	31	15	18	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47287496--47287565	16	4.4	16	96	0	104	31	0	35	32	1.58
47287544--47287653	45	2.6	45	80	9	133	34	5	28	31	1.80
47287799--47287833	18	2.0	17	88	5	52	54	0	0	45	0.99
47287961--47288017	28	2.0	28	96	0	105	28	24	40	7	1.81
47305611--47305659	2	24.5	2	100	0	98	0	51	0	48	1.00
47311712--47312318	155	3.9	153	93	3	963	28	9	8	53	1.63
47312316--47312962	304	2.1	303	90	4	993	52	7	10	28	1.64
47312316--47312963	151	4.3	152	88	4	932	52	8	10	28	1.65
47312898--47313034	67	2.1	65	86	4	193	50	8	16	24	1.73
47312753--47313183	220	2.0	220	87	3	636	51	8	11	28	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161