genome.fa.s22.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  106  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33536287--33536361	19	3.8	19	91	6	114	36	18	10	34	1.86
33536529--33536735	102	2.0	102	100	0	414	40	14	11	32	1.83
33537745--33538412	334	2.0	334	100	0	1336	29	13	28	28	1.94
33539115--33539161	24	1.9	24	86	4	67	36	0	38	25	1.56
33539846--33540245	27	14.9	27	82	0	426	42	21	17	18	1.89
33539843--33540243	81	5.0	81	83	1	475	42	21	16	18	1.89
33540438--33540492	26	2.1	26	89	0	83	21	21	23	32	1.98
33540597--33540715	28	4.3	28	88	1	168	24	23	21	30	1.99
33553179--33553232	27	2.0	28	85	3	74	46	1	11	40	1.50
33557212--33557398	51	3.7	50	80	6	191	23	16	28	31	1.96
33557212--33557398	102	1.8	101	88	5	288	23	16	28	31	1.96
33557622--33557653	16	2.0	16	93	0	55	59	0	15	25	1.36
33560624--33560811	50	3.7	50	86	0	268	26	22	29	21	1.99
33560629--33560810	100	1.8	101	91	1	303	26	21	30	21	1.98
33569806--33570361	278	2.0	281	95	1	1010	35	8	19	35	1.84
33574381--33574411	15	2.1	15	93	0	53	35	6	35	22	1.80
33578732--33578762	15	2.1	15	100	0	62	38	6	32	22	1.80
33579351--33579379	10	3.0	10	95	5	51	82	6	0	10	0.83
33580439--33581226	114	6.9	114	85	1	884	33	17	23	25	1.97
33580439--33581229	342	2.3	342	85	1	1032	32	17	23	25	1.97
33581290--33581401	49	2.3	47	77	13	118	19	1	26	51	1.57
33581553--33581594	7	6.0	7	85	0	57	11	0	42	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33581553--33581592	21	1.9	21	94	0	71	12	0	40	47	1.41
33582935--33582966	6	5.3	6	96	0	55	15	46	15	21	1.83
33584001--33584067	35	1.9	35	90	0	107	44	2	14	37	1.61
33584752--33585077	9	37.3	9	71	16	231	44	20	1	33	1.60
33584743--33585050	88	3.5	88	83	7	360	44	20	1	33	1.61
33589579--33589647	21	3.3	21	91	0	111	37	18	39	4	1.71
33590052--33590301	42	5.9	42	84	5	238	25	19	22	32	1.97
33590095--33590303	42	5.0	42	88	4	264	24	19	21	34	1.96
33590095--33590290	85	2.3	85	87	6	274	25	19	21	33	1.97
33594404--33594634	50	4.7	49	80	7	272	31	21	25	22	1.98
33594406--33594634	99	2.3	99	100	0	458	30	21	25	22	1.99
33600819--33600877	30	2.0	30	83	6	75	40	5	25	28	1.77
33608371--33608544	50	3.5	50	84	0	240	28	21	29	21	1.98
33608323--33608565	100	2.4	104	79	6	271	27	20	28	23	1.99
33608379--33608613	50	4.7	49	80	2	195	28	20	27	23	1.99
33613145--33613441	50	5.8	50	79	7	260	28	20	27	22	1.99
33618421--33618465	14	3.2	14	87	0	63	4	28	2	64	1.25
33628362--33628403	22	1.9	22	85	0	57	7	26	0	66	1.17
33633221--33633251	16	1.9	16	93	0	53	29	25	16	29	1.96
33635127--33635162	18	1.9	19	88	5	56	47	2	8	41	1.48
33635303--33635395	24	3.9	24	80	8	100	56	3	6	33	1.41
33637112--33637386	131	2.1	132	87	2	401	25	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33639956--33640084	51	2.5	51	83	2	152	23	18	27	30	1.98
33645614--33645797	51	3.7	49	76	6	172	23	19	27	29	1.98
33646526--33646557	14	2.3	14	100	0	64	43	12	6	37	1.68
33658981--33659073	24	3.9	24	78	2	80	54	6	6	32	1.51
33661936--33661961	2	13.0	2	100	0	52	0	50	0	50	1.00
33661744--33662191	193	2.3	193	86	6	597	24	17	16	41	1.89
33668558--33668614	3	19.0	3	85	0	69	33	1	36	28	1.68
33677013--33677088	31	2.4	31	91	2	116	53	3	1	40	1.27
33677113--33677139	5	5.4	5	100	0	54	59	0	0	40	0.98
33677108--33677163	27	2.1	27	83	6	69	57	3	0	39	1.16
33677467--33677507	19	2.2	19	86	0	55	26	19	14	39	1.90
33681853--33682037	43	4.3	43	80	3	203	30	17	23	28	1.97
33681853--33682037	86	2.2	85	84	2	237	30	17	23	28	1.97
33682305--33682438	66	2.0	66	82	5	164	14	24	17	43	1.86
33687755--33687810	24	2.3	25	81	3	69	39	5	10	44	1.62
33699072--33699382	156	2.0	156	98	0	595	29	17	20	32	1.95
33706991--33707034	23	2.0	22	82	13	54	43	0	2	54	1.12
33707058--33707123	12	5.1	12	77	13	60	31	4	0	63	1.14
33707058--33707133	26	2.8	28	78	11	86	31	3	1	63	1.21
33711088--33711129	22	1.9	22	85	0	57	28	14	33	23	1.94
33711394--33711418	10	2.5	10	100	0	50	56	16	12	16	1.68
33727716--33727788	34	2.2	32	78	9	76	45	8	1	45	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33727737--33727791	20	2.7	19	81	13	56	45	7	1	45	1.41
33729983--33730097	54	2.1	54	81	0	131	20	17	29	32	1.96
33734963--33735003	15	2.9	14	85	14	57	41	0	7	51	1.30
33735261--33735300	15	2.6	17	77	22	52	45	2	0	52	1.14
33742146--33742236	33	2.8	33	77	12	105	37	8	8	45	1.67
33743140--33743193	17	3.2	17	69	27	51	59	11	5	24	1.53
33745007--33745046	19	2.1	19	86	9	55	60	0	35	5	1.19
33747403--33747473	8	8.9	8	76	17	58	54	29	0	15	1.41
33747403--33747473	17	4.4	17	74	12	69	54	29	0	15	1.41
33747389--33747467	39	2.0	41	82	5	99	54	27	0	17	1.43
33747416--33747492	31	2.5	32	85	4	104	55	24	0	19	1.43
33758368--33758413	21	2.2	21	96	0	83	39	13	30	17	1.87
33758715--33758745	2	15.5	2	93	0	53	54	0	45	0	0.99
33765597--33765630	14	2.4	14	90	0	50	44	32	2	20	1.67
33766271--33766417	40	3.7	38	81	6	161	34	16	4	44	1.69
33766271--33766418	80	1.9	80	87	5	219	34	16	4	44	1.68
33766506--33766575	25	2.8	25	77	0	77	30	21	21	27	1.98
33769596--33769781	46	4.0	46	80	2	167	30	16	22	30	1.96
33769596--33769781	92	2.0	92	82	6	225	30	16	22	30	1.96
33773652--33773916	40	6.7	40	90	2	374	24	22	27	25	2.00
33773652--33773949	119	2.5	119	84	4	352	25	21	27	24	1.99
33781684--33781868	79	2.3	81	84	7	236	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33781685--33781868	40	4.6	40	83	9	216	24	22	27	25	2.00
33781685--33781901	79	2.7	79	81	7	201	25	22	27	24	2.00
33785918--33785948	8	3.9	8	95	0	53	9	25	41	22	1.84
33793305--33793348	23	1.9	22	82	17	54	36	25	0	38	1.56
33793393--33793480	44	2.0	45	90	2	142	32	25	18	23	1.97
33793499--33793677	51	3.5	50	78	7	209	30	28	16	24	1.97
33793489--33793673	101	1.8	101	89	5	293	30	27	17	24	1.97
33796590--33796736	74	2.0	73	95	1	267	36	29	8	25	1.85
33798634--33798730	20	4.8	20	68	20	67	42	2	4	51	1.32
33798698--33798734	11	3.5	11	78	14	51	45	0	2	51	1.15
33803352--33803407	29	1.9	29	82	7	69	17	28	30	23	1.97
33805324--33805384	20	3.1	19	79	13	70	49	6	1	42	1.38
33826032--33826210	45	4.0	45	89	4	265	21	16	26	35	1.95
33828652--33828855	41	5.0	41	87	3	295	19	29	18	32	1.95
33834710--33834813	41	2.5	41	93	0	172	24	29	19	26	1.98
33857681--33857841	80	2.0	80	93	0	277	42	13	13	31	1.82
33864863--33864982	40	3.0	40	82	10	122	18	32	27	21	1.97
33867378--33867428	25	2.0	25	100	0	102	45	15	15	23	1.85
33883506--33883534	12	2.3	13	94	5	51	20	6	6	65	1.40
33910578--33910620	22	2.1	19	87	12	59	46	2	0	51	1.13
33910968--33911020	19	2.8	19	88	0	79	30	39	20	9	1.84
33913468--33913500	11	3.1	11	91	8	59	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33913469--33913502	10	3.3	10	95	4	59	79	0	20	0	0.73
33916087--33916125	17	2.2	18	86	4	53	71	0	15	12	1.14
33921086--33921124	19	2.1	19	100	0	78	33	25	15	25	1.95
33921158--33921232	29	2.6	29	78	16	75	0	18	8	73	1.07
33921794--33921893	30	3.4	29	78	10	87	41	5	21	33	1.74
33921885--33921918	16	2.1	17	94	5	61	23	2	5	67	1.26
33929630--33929674	24	1.9	24	90	4	74	40	6	44	8	1.62
33936989--33937045	27	2.1	27	87	9	80	19	12	12	56	1.67
33937359--33937388	15	2.0	15	100	0	60	40	33	6	20	1.78
33940722--33941010	129	2.2	129	88	1	427	29	30	18	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161