genome.fa.s22.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  125  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39520687--39520852	80	2.1	79	85	5	219	25	19	27	27	1.99
39528747--39528879	40	3.3	40	89	2	205	24	18	28	28	1.98
39528748--39528902	80	1.9	79	85	6	215	25	18	27	28	1.98
39532179--39532208	7	4.1	7	95	4	51	13	13	26	46	1.80
39532921--39532950	11	2.7	11	89	0	51	26	13	16	43	1.85
39539668--39539717	25	2.0	25	84	3	66	46	24	2	28	1.64
39542713--39542756	18	2.4	18	80	3	52	47	11	15	25	1.79
39546597--39546633	17	2.2	17	90	0	56	45	13	8	32	1.73
39550423--39550506	40	2.1	40	82	4	98	32	10	13	44	1.78
39550450--39550506	20	2.8	20	72	0	60	33	10	12	43	1.76
39551630--39551886	86	3.0	86	92	1	399	37	18	7	35	1.80
39557602--39557730	67	1.9	67	95	0	231	42	13	24	19	1.87
39559808--39559841	6	5.8	6	93	6	61	85	0	14	0	0.60
39559808--39559841	17	1.9	17	94	5	59	85	0	14	0	0.60
39561045--39561551	44	11.6	44	77	5	458	28	15	25	30	1.96
39561045--39561459	220	1.9	217	93	1	713	27	16	26	30	1.96
39561061--39561543	220	2.2	218	89	2	700	28	15	26	30	1.96
39561124--39561540	132	3.2	133	87	1	572	29	15	25	29	1.96
39561672--39561877	44	4.7	44	80	5	238	25	17	28	29	1.97
39562184--39562299	44	2.7	44	78	9	121	30	20	21	27	1.98
39562721--39562793	19	3.7	19	89	7	110	36	8	15	39	1.77
39563108--39563152	21	2.1	21	84	8	56	22	6	0	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39564353--39564406	22	2.4	23	84	9	76	12	27	18	40	1.87
39567536--39568201	301	2.2	304	80	9	724	39	9	13	37	1.77
39570564--39570763	50	3.9	50	88	4	247	21	29	22	27	1.99
39570516--39570710	100	2.0	100	83	0	246	22	28	21	27	1.99
39572050--39572096	12	4.3	11	82	12	53	23	2	4	70	1.16
39590380--39590438	23	2.6	22	82	10	75	44	20	3	32	1.68
39595187--39595245	23	2.6	22	82	10	75	44	20	3	32	1.68
39603317--39603439	63	2.0	63	86	0	174	31	21	26	20	1.98
39609534--39609907	44	8.4	44	73	5	250	31	20	23	25	1.98
39609534--39610064	89	5.9	89	78	6	446	31	19	22	27	1.98
39609942--39610104	85	1.9	85	80	7	188	29	20	20	30	1.97
39610643--39610783	71	2.0	71	95	0	255	36	9	24	29	1.86
39618173--39618211	17	2.3	17	95	0	69	41	5	7	46	1.55
39624173--39624472	39	7.6	39	92	4	464	23	28	23	25	2.00
39626281--39626354	36	2.1	36	89	5	114	24	14	16	44	1.85
39639020--39639222	56	3.6	54	73	18	155	41	2	2	53	1.29
39639018--39639164	11	13.4	11	67	21	69	41	2	1	55	1.20
39639078--39639116	20	2.0	20	94	0	69	46	0	0	53	1.00
39639077--39639165	31	2.8	31	73	18	92	41	2	0	56	1.12
39639083--39639143	17	3.4	17	82	13	61	39	3	0	57	1.15
39646121--39646225	53	2.0	53	96	0	192	42	12	10	34	1.77
39656174--39656234	30	2.0	30	96	0	113	44	14	13	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39658815--39658852	20	1.9	19	94	5	67	44	21	26	7	1.79
39663078--39663125	16	3.2	16	70	24	50	50	10	6	33	1.62
39663229--39663254	13	2.0	13	100	0	52	46	15	15	23	1.83
39666514--39666693	90	2.0	90	82	2	218	26	16	13	42	1.86
39671625--39671761	68	2.0	68	95	0	247	39	12	14	33	1.84
39672184--39672289	25	4.4	24	77	7	90	19	28	20	31	1.97
39679526--39679569	5	8.6	5	85	5	61	40	0	18	40	1.50
39680198--39680278	25	3.2	25	89	3	110	18	24	22	34	1.96
39694253--39694299	24	2.0	24	86	0	67	44	17	25	12	1.84
39702494--39703044	44	12.6	43	71	13	245	28	19	24	28	1.99
39702409--39703180	217	3.5	217	92	1	1179	28	19	23	28	1.98
39703340--39703572	117	2.0	117	98	0	448	40	27	14	17	1.88
39703732--39704018	142	2.0	142	95	0	520	39	18	12	29	1.88
39706291--39706360	36	1.9	36	88	0	104	52	11	5	30	1.60
39713515--39713558	6	7.2	6	81	2	52	0	56	2	40	1.11
39713515--39713558	18	2.4	18	92	3	70	0	56	2	40	1.11
39713891--39713916	11	2.4	11	100	0	52	23	0	15	61	1.33
39716292--39716330	20	2.0	20	94	0	69	48	0	2	48	1.15
39716417--39716482	35	1.9	34	93	6	116	46	12	7	33	1.69
39717163--39717220	31	1.9	30	86	10	82	46	8	1	43	1.44
39718132--39718232	51	2.0	51	98	0	193	43	8	24	22	1.82
39724551--39724585	2	17.5	2	87	0	52	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39726055--39726121	15	4.6	15	73	12	50	28	1	1	68	1.07
39729659--39729694	18	2.0	18	100	0	72	27	11	16	44	1.82
39730958--39731008	15	3.4	15	80	20	54	37	1	7	52	1.42
39731355--39731456	51	2.0	51	98	0	195	20	10	21	47	1.80
39737222--39737345	50	2.5	50	84	2	160	34	14	28	22	1.93
39737222--39737323	25	4.1	25	90	0	159	32	13	30	23	1.93
39737222--39737345	25	5.0	25	83	5	108	34	14	28	22	1.93
39738158--39738184	4	6.8	4	100	0	54	0	22	0	77	0.76
39742957--39742992	16	2.3	15	90	4	54	50	5	2	41	1.40
39744398--39744426	15	1.9	15	100	0	58	6	6	24	62	1.45
39745512--39745583	29	2.5	29	90	2	119	29	11	22	37	1.88
39746066--39746090	13	1.9	13	100	0	50	60	8	16	16	1.58
39749471--39749512	15	2.7	16	82	14	52	45	0	2	52	1.13
39749462--39749503	15	2.9	15	82	10	52	47	0	0	52	1.00
39749726--39749758	16	2.1	16	100	0	66	21	36	6	36	1.78
39750076--39750105	15	2.0	15	100	0	60	46	6	6	40	1.56
39755513--39755581	18	3.9	18	84	1	77	31	28	21	17	1.96
39755537--39755590	17	3.1	17	89	2	72	33	24	24	18	1.97
39761027--39761149	57	2.1	58	84	3	167	48	6	17	27	1.71
39761087--39761174	45	1.9	46	84	6	117	43	6	18	31	1.76
39764217--39764321	51	2.1	51	88	0	156	31	11	12	44	1.77
39768796--39768858	26	2.4	26	86	0	90	34	12	12	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39769566--39769633	34	2.0	34	85	5	93	25	23	20	30	1.98
39770856--39771029	92	1.9	92	86	0	249	25	20	10	44	1.83
39778605--39778686	28	2.8	28	68	5	65	47	12	18	21	1.81
39785480--39785528	22	2.2	22	85	0	62	46	2	2	48	1.25
39785567--39785668	49	2.1	49	96	0	186	29	1	24	44	1.65
39787409--39787435	8	3.4	8	100	0	54	14	0	0	85	0.61
39787637--39787683	20	2.3	20	89	7	69	31	6	2	59	1.34
39787630--39787683	20	3.0	18	86	10	67	31	7	1	59	1.36
39787637--39787692	20	2.9	19	82	10	60	30	8	1	58	1.39
39788531--39788806	137	2.0	137	97	0	516	30	22	14	32	1.94
39791926--39791962	6	5.7	7	90	9	53	75	13	0	10	1.04
39791927--39791994	19	3.6	19	76	7	66	73	11	5	8	1.24
39791946--39792030	26	3.1	27	78	15	77	70	9	10	9	1.34
39791940--39792017	32	2.5	30	85	8	95	70	11	8	8	1.34
39793659--39794853	131	9.2	131	90	1	1860	30	22	23	23	1.99
39793659--39794972	652	2.0	650	86	3	1849	30	21	24	23	1.99
39794779--39795223	129	3.4	129	88	1	638	30	20	24	24	1.98
39794779--39795294	259	2.0	258	82	3	631	30	20	23	25	1.98
39795226--39795431	85	2.4	86	80	7	213	28	18	23	29	1.98
39795226--39795608	44	8.8	44	71	10	171	29	18	23	28	1.98
39795312--39795608	88	3.4	88	74	7	314	28	18	24	27	1.98
39795889--39795925	11	3.5	11	85	14	51	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39795889--39795929	20	2.0	21	90	4	66	75	0	0	24	0.80
39813213--39813238	6	4.3	6	100	0	52	15	0	0	84	0.62
39816487--39816516	15	1.9	16	93	6	53	36	6	10	46	1.64
39819494--39819529	17	2.1	17	89	0	54	33	8	8	50	1.63
39823662--39823718	16	3.6	16	95	0	87	29	0	36	33	1.58
39823964--39823998	18	2.0	17	88	5	52	54	0	0	45	0.99
39823923--39824166	79	3.1	79	65	17	220	47	3	2	46	1.33
39824098--39824139	15	2.7	16	82	14	52	52	2	0	45	1.13
39823851--39824164	154	2.0	156	96	1	578	44	3	5	47	1.41
39824107--39824148	15	2.9	15	82	10	52	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161