genome.fa.s22.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  34  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10526407--10526476	31	2.3	31	90	4	108	32	28	20	18	1.96
10527840--10528038	43	4.3	45	68	21	135	55	1	7	36	1.36
10527839--10528024	95	1.9	95	82	7	234	54	1	7	36	1.39
10527944--10527978	12	2.9	12	91	0	61	45	0	11	42	1.40
10527956--10528043	39	2.3	39	83	13	103	54	1	5	38	1.32
10528017--10528059	22	2.0	22	85	0	59	58	2	2	37	1.24
10527968--10528063	47	2.0	46	80	11	106	53	2	6	38	1.38
10531849--10532089	90	2.7	90	81	2	277	27	24	14	33	1.94
10535817--10535854	15	2.4	16	95	4	69	65	10	5	18	1.41
10536672--10536707	17	2.1	17	94	0	63	44	5	8	41	1.58
10540176--10540219	14	3.3	14	84	12	65	40	6	0	52	1.28
10540178--10540223	12	3.7	12	88	11	74	39	6	0	54	1.26
10540164--10540235	26	2.6	28	81	16	105	38	8	0	52	1.32
10540176--10540227	14	3.8	13	80	14	61	40	5	0	53	1.25
10551661--10551709	25	1.9	26	87	4	73	14	14	10	61	1.57
10552618--10552901	44	6.5	43	74	7	225	30	17	20	30	1.96
10552620--10552855	129	1.8	129	81	8	293	30	18	20	30	1.96
10552569--10552996	173	2.5	173	83	4	524	30	17	23	28	1.97
10552920--10553035	45	2.6	45	84	2	144	30	20	24	25	1.99
10554717--10554757	20	2.0	21	86	13	59	34	7	0	58	1.26
10565757--10565800	19	2.5	17	81	7	52	63	6	6	22	1.43
10567665--10567770	41	2.6	41	82	7	126	14	36	27	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10567665--10567762	42	2.4	41	86	5	117	13	37	28	20	1.90
10573701--10573741	13	3.1	13	89	10	57	82	0	17	0	0.66
10573699--10573744	19	2.4	19	89	7	67	82	0	17	0	0.67
10575082--10575227	51	2.9	51	72	2	132	30	21	21	26	1.98
10575241--10575338	51	1.9	51	89	0	151	31	16	22	29	1.96
10575316--10575355	21	1.9	21	85	10	55	42	5	30	22	1.75
10575470--10576077	44	13.5	44	73	12	389	30	19	21	28	1.97
10575452--10576144	227	3.1	227	91	0	1073	31	19	20	28	1.97
10575425--10576033	183	3.4	181	77	9	505	30	19	21	28	1.98
10579686--10579722	14	2.6	14	91	0	65	45	10	5	37	1.62
10580780--10580828	25	2.0	25	88	8	73	51	2	0	46	1.12
10581503--10581786	145	2.0	144	91	0	451	27	24	13	34	1.92
10586634--10586687	21	2.6	21	73	2	56	51	12	1	33	1.51
10586721--10586748	13	2.2	13	100	0	56	46	21	7	25	1.76
10586934--10587064	41	3.2	41	85	4	140	29	23	19	28	1.98
10593530--10593594	32	2.1	32	97	2	123	30	9	12	47	1.72
10593890--10593921	3	10.7	3	100	0	64	31	0	0	68	0.90
10598128--10598193	32	2.1	32	94	2	116	31	9	10	48	1.69
10598485--10598510	3	8.7	3	100	0	52	30	0	0	69	0.89
10599823--10599955	69	1.9	68	90	1	212	24	32	18	25	1.97
10602789--10602951	42	3.9	42	84	2	177	25	20	20	34	1.96
10602784--10602961	84	2.1	83	83	5	216	25	21	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10603183--10603229	21	2.2	21	84	0	58	46	0	12	40	1.42
10604827--10604877	26	2.0	26	88	0	75	43	17	11	27	1.84
10606715--10606813	47	2.1	48	83	5	121	41	1	11	46	1.46
10606808--10606860	10	5.2	10	80	8	54	16	1	0	81	0.79
10606808--10606851	21	2.1	21	87	4	63	13	2	0	84	0.73
10606808--10606861	16	3.4	16	82	12	67	18	1	0	79	0.82
10606818--10606861	22	2.0	22	86	0	61	20	0	0	79	0.73
10606808--10606869	31	2.0	32	83	3	81	19	3	0	77	0.90
10606983--10607296	81	3.7	81	76	15	290	44	24	1	28	1.64
10607340--10607382	14	3.2	14	87	6	54	39	41	0	18	1.51
10607359--10607389	14	2.2	14	94	0	53	41	35	0	22	1.54
10607412--10607443	14	2.3	14	94	0	55	37	31	0	31	1.58
10607547--10607578	15	2.0	17	88	11	50	50	3	0	46	1.17
10607956--10609608	148	11.2	147	89	6	2401	25	15	14	44	1.85
10608455--10609608	146	8.0	146	90	5	1724	25	15	14	44	1.85
10608455--10610193	146	12.0	138	83	8	1367	25	16	13	44	1.85
10609450--10609772	164	2.0	164	96	1	594	24	16	13	45	1.84
10609626--10610193	141	3.9	144	95	1	941	26	16	13	43	1.85
10611983--10612042	7	8.7	7	81	3	59	41	40	1	16	1.58
10613931--10614126	53	3.7	53	98	0	374	33	6	7	52	1.55
10614629--10614688	7	8.7	7	81	3	59	41	40	1	16	1.58
10615784--10615938	41	3.8	41	90	1	231	29	25	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10615989--10616113	40	3.2	39	80	5	146	20	19	21	38	1.94
10619666--10619734	33	2.1	33	86	5	95	36	21	14	27	1.93
10633082--10633110	14	2.0	15	93	6	51	27	0	20	51	1.47
10633597--10633643	12	4.0	12	83	2	51	40	2	8	48	1.45
10634209--10634351	41	3.5	41	87	2	198	29	17	27	25	1.97
10644887--10645341	114	4.0	114	98	0	865	41	2	13	41	1.59
10645421--10645559	41	3.4	41	88	3	208	28	19	28	23	1.98
10647272--10647391	43	2.8	42	84	1	150	28	15	26	29	1.96
10647984--10648138	47	3.3	47	80	7	163	22	12	20	44	1.85
10648006--10648081	25	3.2	25	62	11	59	21	10	18	50	1.76
10649993--10650047	19	2.8	20	81	13	60	29	20	5	45	1.73
10660622--10660665	22	1.9	22	81	9	52	54	2	6	36	1.40
10660674--10660720	20	2.3	20	85	0	67	55	0	8	36	1.31
10660674--10660736	18	3.4	19	80	8	67	52	1	9	36	1.44
10660586--10660749	54	3.1	52	68	19	124	51	3	10	35	1.52
10660566--10660767	102	1.9	105	90	4	320	52	3	8	34	1.49
10661288--10661321	15	2.2	16	89	5	52	73	5	8	11	1.24
10661497--10661541	23	2.0	22	91	4	72	40	17	4	37	1.70
10661497--10661574	21	3.7	21	84	10	90	41	15	6	37	1.73
10661955--10662727	44	17.6	43	80	7	793	30	24	15	29	1.95
10661955--10662727	132	5.8	132	92	0	1208	30	24	15	29	1.95
10663952--10663985	6	6.0	6	93	6	54	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10663952--10663988	16	2.3	17	90	9	60	0	16	0	83	0.64
10668178--10668211	17	1.9	17	88	5	50	61	0	0	38	0.96
10668243--10668406	58	3.2	48	69	21	134	51	3	9	34	1.52
10668296--10668354	24	2.6	22	76	10	55	52	1	6	38	1.38
10668296--10668454	48	3.2	48	70	22	137	54	2	7	35	1.43
10668348--10668397	20	2.5	20	86	0	73	54	0	10	36	1.34
10668384--10668426	16	2.9	15	83	13	61	51	2	9	37	1.47
10668260--10668423	50	3.1	51	67	22	115	51	3	10	34	1.51
10668240--10668454	106	2.1	103	88	3	315	53	3	8	34	1.49
10669000--10669106	19	5.2	21	79	10	73	42	15	5	35	1.71
10669000--10669057	22	2.6	22	84	7	73	43	17	3	36	1.66
10669013--10669110	19	4.8	19	81	9	106	40	16	6	36	1.73
10669047--10669109	21	3.1	21	86	9	94	41	14	6	38	1.71
10673106--10673133	14	2.0	14	100	0	56	50	0	7	42	1.30
10678627--10678668	21	2.0	21	95	0	75	40	16	0	42	1.48
10681143--10681199	16	3.6	16	73	17	64	49	1	26	22	1.60
10681144--10681218	32	2.3	32	97	0	141	48	2	26	22	1.64
10681160--10681215	16	3.5	16	75	18	62	48	3	28	19	1.66
10681237--10681342	39	2.7	39	100	0	212	35	14	18	31	1.91
10686656--10686797	13	10.8	13	81	3	151	34	4	7	52	1.52
10686661--10686788	40	3.2	40	87	3	170	33	4	8	53	1.52
10686664--10686797	53	2.5	54	79	7	82	35	5	8	51	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10686706--10686845	53	2.7	52	83	3	156	37	5	8	48	1.58
10687283--10687317	17	2.0	18	88	5	54	22	5	5	65	1.36
10688082--10688125	21	2.0	23	82	8	56	43	4	0	52	1.22
10695997--10696053	26	2.2	26	96	0	105	40	5	29	24	1.77
10698118--10698174	26	2.2	27	84	6	73	36	1	1	59	1.18
10700023--10700047	2	12.5	2	100	0	50	48	0	0	52	1.00
10702889--10703154	6	44.3	6	100	0	532	33	0	16	50	1.46
10709001--10709096	19	5.2	19	81	5	124	48	0	13	37	1.43
10709001--10709096	37	2.6	37	98	0	183	48	0	13	37	1.43
10709735--10709795	27	2.3	28	88	11	101	54	0	4	40	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161