genome.fa.s22.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  44  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13353236--13353386	41	3.7	41	80	7	121	31	13	31	23	1.94
13367843--13367875	17	2.0	17	88	5	50	66	9	6	18	1.40
13373468--13373533	6	10.7	6	74	18	55	13	4	4	77	1.08
13374484--13374518	7	4.9	7	96	3	61	85	0	14	0	0.59
13387776--13387821	22	2.1	22	100	0	92	39	0	21	39	1.54
13389124--13389190	20	3.4	20	81	6	75	55	0	25	19	1.43
13411226--13411254	13	2.1	14	93	6	51	10	6	13	68	1.37
13423788--13423914	65	2.0	65	98	0	245	34	25	12	27	1.92
13429346--13429397	20	2.7	19	75	3	59	44	7	7	40	1.62
13431638--13431927	27	10.7	27	83	1	330	19	16	21	42	1.89
13431639--13431927	108	2.7	108	86	4	388	19	16	21	42	1.89
13436419--13436457	21	1.9	21	89	5	62	15	35	25	23	1.94
13442973--13443140	27	6.3	27	78	12	150	24	12	19	43	1.86
13442983--13443150	54	3.1	53	82	9	198	23	11	19	45	1.83
13442973--13443140	81	2.1	80	84	5	214	24	12	19	43	1.86
13444063--13444111	25	2.0	25	88	8	73	30	38	2	28	1.68
13444064--13444110	12	3.6	13	80	8	51	31	36	2	29	1.70
13445112--13445160	25	2.0	25	88	8	73	30	38	2	28	1.68
13445113--13445159	12	3.6	13	80	8	51	31	36	2	29	1.70
13445727--13445780	25	2.2	25	86	0	72	16	44	12	25	1.84
13448445--13448486	18	2.3	19	87	4	59	35	2	7	54	1.41
13450462--13450492	12	2.6	12	94	0	53	58	12	0	29	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13452521--13452565	23	2.0	22	87	12	65	77	0	2	20	0.87
13452527--13452564	15	2.7	14	84	11	51	81	0	0	18	0.69
13452521--13452563	22	2.0	23	90	9	72	79	0	2	18	0.85
13453940--13453982	21	2.0	21	95	0	77	25	20	4	48	1.69
13467480--13467526	15	2.9	16	78	12	51	40	10	2	46	1.50
13467682--13467760	24	3.2	24	73	8	77	30	8	0	60	1.27
13471203--13471249	15	2.9	16	78	12	51	40	10	2	46	1.50
13471405--13471483	24	3.2	24	73	8	77	30	8	0	60	1.27
13479608--13479658	24	2.1	24	88	0	75	45	3	25	25	1.71
13480379--13480740	181	2.0	181	94	1	636	32	10	14	42	1.80
13491621--13492218	50	12.0	50	73	4	427	33	24	19	22	1.97
13491627--13492208	100	5.8	99	81	3	675	33	24	19	22	1.97
13493911--13494020	51	2.1	50	80	14	127	26	4	3	65	1.28
13504890--13504914	13	1.9	13	100	0	50	68	24	0	8	1.16
13510665--13510770	41	2.6	41	92	0	176	31	25	21	21	1.98
13511066--13511310	122	2.0	122	99	0	481	47	20	2	28	1.63
13512701--13512725	13	1.9	13	100	0	50	68	24	0	8	1.16
13515096--13515692	50	12.0	50	72	5	420	32	22	20	23	1.98
13515102--13515701	100	6.0	99	83	6	701	32	22	21	23	1.98
13518965--13519007	22	2.0	22	86	4	61	41	0	9	48	1.35
13519684--13519755	24	2.9	24	75	4	72	61	0	8	30	1.26
13519918--13519964	18	2.8	17	78	12	53	46	2	10	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13524733--13524804	24	2.9	24	75	4	72	61	0	8	30	1.26
13537285--13537344	5	12.0	5	76	13	61	18	3	0	78	0.89
13537285--13537335	19	2.8	18	85	14	70	19	1	0	78	0.85
13537285--13537344	22	2.7	23	82	10	70	18	3	0	78	0.89
13538862--13538954	41	2.3	40	78	9	98	24	17	26	31	1.97
13538967--13539091	40	3.1	40	83	5	153	27	20	20	32	1.97
13539580--13539694	60	1.9	62	87	7	173	32	0	20	46	1.51
13539688--13539737	21	2.3	21	82	3	64	24	0	40	36	1.55
13539832--13539874	7	6.1	7	83	0	50	25	0	46	27	1.53
13542062--13542215	43	3.6	43	85	6	181	21	17	29	31	1.96
13543918--13543960	19	2.3	18	81	18	52	37	18	11	32	1.87
13544553--13544594	18	2.3	19	87	4	59	54	7	2	35	1.41
13549240--13549402	45	3.6	45	81	4	159	17	19	18	44	1.87
13549368--13549541	45	3.9	45	86	1	251	28	21	16	33	1.95
13549370--13549539	90	1.9	90	93	2	297	28	21	16	34	1.95
13549375--13549560	45	4.1	43	78	10	146	27	21	16	34	1.94
13549371--13549582	90	2.4	90	80	4	266	26	20	16	35	1.94
13549529--13549635	46	2.4	45	85	3	151	20	18	16	43	1.88
13555553--13555595	21	2.1	20	82	4	50	39	0	18	41	1.51
13558889--13559052	57	2.9	57	84	6	163	43	2	2	51	1.28
13558917--13559002	27	3.1	25	70	20	64	46	1	3	48	1.26
13558956--13559065	26	4.0	26	71	14	78	47	2	1	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13558921--13559052	58	2.3	57	86	3	176	45	2	2	50	1.27
13559222--13559267	16	2.9	16	90	0	65	32	17	0	50	1.47
13559195--13559367	90	1.9	89	97	1	328	39	16	3	40	1.66
13559312--13559356	16	2.9	16	83	6	56	33	15	0	51	1.44
13564816--13564899	40	2.1	40	100	0	168	36	15	9	38	1.80
13568985--13569039	24	2.3	24	84	6	67	38	29	3	29	1.74
13572307--13572365	24	2.4	24	83	8	66	35	28	5	30	1.79
13576917--13576962	6	7.7	6	92	0	65	17	39	0	43	1.49
13576917--13576962	12	3.8	12	94	0	74	17	39	0	43	1.49
13576917--13576962	18	2.6	18	92	0	74	17	39	0	43	1.49
13578066--13578128	31	2.0	31	84	0	81	47	4	7	39	1.54
13583282--13583462	36	5.0	37	93	2	271	37	14	20	26	1.92
13585342--13585416	39	1.9	39	97	0	141	38	14	18	28	1.90
13588495--13588540	23	2.0	23	83	8	58	17	4	17	60	1.51
13588650--13588737	44	2.0	46	90	4	144	21	5	28	44	1.75
13589973--13590005	17	1.9	17	100	0	66	36	6	6	51	1.51
13590245--13590343	29	3.2	32	80	11	91	53	12	1	33	1.45
13590274--13590343	20	3.5	21	77	11	67	55	12	0	31	1.38
13590255--13590353	29	3.3	28	81	14	101	55	12	1	31	1.43
13590365--13590638	9	30.2	9	76	7	250	50	16	2	30	1.60
13590387--13590638	91	2.8	90	84	5	312	49	17	2	30	1.60
13595385--13595453	21	3.3	21	87	0	93	36	20	42	1	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13595438--13595477	12	3.3	12	89	0	62	45	17	35	2	1.62
13595746--13595779	15	2.3	15	89	0	50	14	2	23	58	1.50
13595835--13595993	42	3.8	42	89	2	239	23	20	23	33	1.97
13596064--13596107	22	2.0	22	91	4	72	45	27	15	11	1.81
13604617--13604716	48	2.1	48	92	3	166	41	20	4	35	1.71
13605790--13605970	20	9.1	20	61	9	64	34	19	28	17	1.95
13605768--13605970	80	2.5	80	86	0	280	33	18	28	19	1.95
13605741--13605970	40	5.8	40	84	0	244	34	17	28	19	1.94
13612449--13612493	22	2.0	22	95	0	81	31	20	8	40	1.83
13615346--13615409	31	2.1	31	90	0	101	46	7	12	32	1.70
13615490--13615767	46	6.0	46	90	5	445	41	9	20	28	1.84
13615490--13615767	93	3.0	93	93	2	472	41	9	20	28	1.84
13617063--13617097	7	4.9	7	93	6	61	71	0	2	25	1.00
13620689--13620722	13	2.6	13	95	0	59	73	0	2	23	0.97
13622524--13622631	44	2.5	44	82	0	144	22	13	24	39	1.90
13624904--13625006	51	2.0	51	100	0	206	43	11	7	36	1.70
13626293--13626322	5	6.0	5	96	0	51	0	20	3	76	0.92
13626988--13627166	42	4.3	42	83	5	227	39	21	17	21	1.93
13626993--13627166	84	2.1	84	87	2	260	39	22	17	20	1.93
13627643--13627699	23	2.4	23	94	2	96	42	5	21	31	1.75
13630883--13630915	17	1.9	17	93	0	57	48	21	15	15	1.81
13636494--13636527	16	2.1	15	89	10	50	64	5	8	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13640300--13640428	33	3.9	33	71	7	109	29	17	27	25	1.98
13643750--13643801	24	2.2	24	92	0	86	40	7	23	28	1.82
13644268--13644294	14	1.9	14	100	0	54	25	0	0	74	0.83
13644871--13644913	15	2.9	15	79	6	52	39	18	6	34	1.78
13652771--13652862	43	2.1	43	87	0	130	27	11	28	32	1.92
13658861--13658886	6	4.3	6	100	0	52	15	53	0	30	1.42
13663344--13663376	2	16.5	2	100	0	66	48	0	0	51	1.00
13673914--13674089	91	1.9	91	83	2	228	26	23	17	32	1.97
13680914--13680955	15	2.7	16	82	14	52	45	0	2	52	1.13
13680905--13680946	15	2.9	15	82	10	52	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161