genome.fa.s22.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  124  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39297735--39298809	535	2.0	535	95	0	1920	25	24	20	28	1.99
39299626--39299655	16	1.9	15	93	6	51	56	36	0	6	1.26
39301530--39301588	15	3.9	15	77	4	64	33	11	1	52	1.48
39301524--39301586	30	2.1	31	84	3	83	31	12	3	52	1.55
39301547--39301587	16	2.6	16	92	3	66	26	14	2	56	1.51
39302380--39302425	24	1.9	24	86	0	65	45	0	2	52	1.13
39302620--39302685	13	5.1	13	76	7	71	36	22	6	34	1.79
39304881--39305079	102	2.0	102	95	0	362	30	12	22	34	1.91
39311890--39312016	43	3.0	42	79	14	161	33	24	18	23	1.96
39311890--39312005	41	2.8	41	83	11	155	33	25	18	21	1.97
39312028--39312319	51	5.8	51	73	10	267	30	27	17	24	1.97
39312026--39312311	101	2.8	101	90	1	448	30	27	18	24	1.98
39315575--39315981	36	10.9	36	71	12	248	22	18	14	44	1.86
39315576--39315942	75	4.9	76	79	7	333	22	19	14	43	1.87
39315576--39315883	147	2.1	148	84	3	397	21	17	16	44	1.87
39315941--39316111	75	2.3	75	83	0	198	25	20	9	43	1.82
39315905--39316111	36	5.6	36	74	10	168	25	20	10	43	1.83
39315965--39316128	75	2.2	75	82	0	184	25	21	9	43	1.83
39316504--39316609	56	1.9	56	86	0	149	21	29	28	20	1.98
39328825--39328890	5	13.6	5	79	17	77	60	0	0	39	0.97
39328824--39328890	29	2.3	30	82	14	79	59	0	0	40	0.97
39328831--39328891	24	2.6	24	78	16	74	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39329135--39329241	50	2.1	50	84	3	144	20	30	22	26	1.98
39332369--39332433	25	2.6	25	97	0	121	32	15	27	24	1.95
39334027--39334529	36	13.5	36	70	11	273	21	19	14	45	1.85
39334178--39334279	35	2.9	35	78	10	102	24	16	11	47	1.80
39333987--39334322	147	2.3	147	89	1	487	20	19	13	45	1.84
39334756--39335008	89	2.8	88	82	5	294	34	18	12	34	1.88
39335525--39335567	9	4.8	9	76	0	50	39	2	0	58	1.11
39335961--39335998	12	3.5	11	86	13	60	34	0	0	65	0.93
39335959--39336005	10	4.6	10	85	12	60	34	0	0	65	0.93
39336547--39336597	25	2.0	25	81	7	59	9	35	0	54	1.33
39342634--39342775	29	4.8	29	74	9	126	39	13	24	22	1.90
39342643--39342779	59	2.3	59	83	5	161	39	12	25	22	1.89
39342674--39342818	59	2.5	59	90	0	227	36	13	26	24	1.92
39349652--39349736	40	2.1	40	86	0	116	35	17	20	27	1.95
39349752--39349853	40	2.5	40	85	0	123	27	25	22	24	2.00
39350176--39350291	51	2.3	51	95	0	214	27	2	25	43	1.67
39350263--39350348	28	2.9	30	76	10	79	19	1	39	39	1.60
39352255--39352562	43	7.2	43	80	2	316	25	16	29	28	1.97
39352255--39352562	85	3.6	86	82	2	334	25	16	29	28	1.97
39352255--39352534	128	2.2	128	83	1	337	23	16	30	29	1.97
39356576--39356618	21	2.0	21	86	8	61	44	11	6	37	1.68
39356961--39356994	16	2.1	16	88	0	50	35	17	0	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39359712--39359820	34	3.3	32	81	10	121	55	1	1	41	1.21
39359736--39359795	17	3.8	16	73	18	54	56	1	1	40	1.19
39359768--39359873	38	2.9	39	81	10	100	53	1	0	44	1.11
39359806--39359881	37	2.1	38	85	5	102	51	1	1	46	1.17
39366141--39366172	17	1.9	16	93	6	55	53	0	3	43	1.16
39372107--39372142	16	2.2	16	100	0	72	25	0	36	38	1.56
39372123--39372213	45	2.0	45	85	2	121	27	6	28	37	1.82
39372378--39372412	18	2.0	17	88	5	52	54	0	0	45	0.99
39380662--39380689	3	9.3	3	100	0	56	67	0	0	32	0.91
39383609--39383643	3	11.7	3	100	0	70	65	0	0	34	0.93
39388334--39388365	3	10.7	3	100	0	64	65	0	0	34	0.93
39388789--39388893	51	2.1	51	88	0	156	48	5	12	33	1.64
39388858--39388882	13	1.9	13	100	0	50	56	8	16	20	1.65
39389320--39389345	6	4.3	6	100	0	52	50	0	0	50	1.00
39392660--39392867	91	2.3	91	92	0	335	45	3	4	46	1.39
39392782--39392842	28	2.2	28	85	5	81	45	0	3	50	1.17
39392700--39392842	44	3.2	43	69	20	121	46	2	3	48	1.31
39392894--39393202	59	5.2	58	66	20	188	41	2	4	50	1.37
39392883--39393295	120	3.4	120	96	0	747	42	2	5	50	1.37
39392956--39393263	61	5.1	61	68	17	248	42	1	6	49	1.38
39392991--39393038	18	2.8	18	74	22	50	43	0	0	56	0.99
39393008--39393059	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39393128--39393179	15	3.6	15	80	12	56	44	0	1	53	1.11
39393257--39393298	15	2.7	16	82	14	52	45	0	2	52	1.13
39393248--39393289	15	2.9	15	82	10	52	47	0	0	52	1.00
39398798--39398843	23	2.1	23	84	8	60	58	2	2	36	1.22
39398808--39398862	21	2.5	21	79	8	56	61	1	1	34	1.17
39398941--39398979	17	2.1	19	86	13	55	17	5	0	76	0.96
39399114--39399452	169	2.0	169	92	0	570	20	28	21	28	1.98
39408498--39408526	14	2.0	15	93	6	51	0	44	0	55	0.99
39415584--39415627	18	2.4	18	80	0	52	6	31	36	25	1.82
39416248--39416275	14	2.0	14	100	0	56	35	7	21	35	1.81
39417737--39417808	27	2.7	27	95	0	126	33	26	8	31	1.86
39417870--39417991	16	7.4	16	65	18	63	63	10	2	22	1.38
39417863--39417991	49	2.6	49	92	1	213	62	11	3	23	1.43
39418267--39418324	30	2.0	30	86	10	84	37	25	0	36	1.57
39418935--39418990	22	2.8	21	76	13	64	60	0	0	39	0.97
39418955--39419000	22	2.1	22	84	8	58	65	2	0	32	1.05
39419723--39419775	26	2.0	26	92	0	88	35	0	1	62	1.06
39429624--39429772	68	2.2	68	82	2	174	25	21	18	34	1.96
39436048--39436082	16	2.2	16	100	0	70	51	0	37	11	1.38
39442650--39442765	34	3.6	31	79	7	108	34	3	16	45	1.64
39442692--39442767	30	2.5	30	80	4	91	35	2	15	46	1.60
39442653--39442798	65	2.3	63	81	11	156	33	3	15	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39443026--39443082	18	3.2	18	70	9	53	28	7	24	40	1.81
39461144--39461171	9	3.1	9	100	0	56	14	10	10	64	1.50
39463701--39463778	26	3.2	25	76	7	79	38	20	23	17	1.93
39468278--39468344	32	2.1	31	83	8	82	32	1	4	61	1.25
39469522--39469587	15	4.8	14	67	22	50	66	1	0	31	1.01
39471416--39471452	18	2.1	18	100	0	74	27	27	24	21	1.99
39472954--39472994	21	1.9	22	90	5	66	21	21	4	51	1.67
39474756--39474833	3	25.3	3	70	14	52	60	2	7	29	1.38
39476029--39476193	89	1.9	89	81	7	201	27	25	19	27	1.99
39476346--39476776	132	3.3	132	88	1	616	25	23	20	30	1.98
39476763--39477012	89	2.8	89	87	1	340	24	21	24	30	1.99
39476962--39477244	45	6.3	45	85	0	368	29	23	16	30	1.96
39479500--39479544	17	2.6	18	89	6	67	6	17	0	75	1.01
39484667--39484702	9	4.0	9	88	0	54	61	0	0	38	0.96
39488551--39488768	107	2.0	107	94	0	382	25	19	18	36	1.94
39496665--39496983	43	7.3	43	81	2	325	29	31	17	21	1.96
39496665--39496958	129	2.2	129	86	4	392	29	31	17	21	1.96
39497226--39497256	15	2.1	15	93	0	53	19	32	0	48	1.49
39502352--39502494	74	1.9	76	92	2	245	46	25	0	27	1.53
39502537--39502568	7	4.6	7	100	0	64	31	53	0	15	1.43
39502668--39502704	14	2.6	14	91	0	56	48	27	0	24	1.51
39502962--39503157	41	4.8	41	84	5	213	31	25	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39503222--39503328	40	2.7	40	89	4	164	18	22	23	35	1.96
39506476--39506515	17	2.4	16	91	4	62	42	2	10	45	1.51
39508417--39508599	94	1.9	94	100	0	366	37	24	14	24	1.92
39509735--39509772	20	1.9	20	88	0	58	23	0	5	71	1.07
39512291--39512474	40	4.5	40	77	6	156	33	28	15	23	1.95
39515660--39515725	26	2.5	28	85	9	86	22	0	6	71	1.08
39516251--39516483	116	2.0	116	93	0	394	19	27	12	39	1.88
39517757--39517785	14	2.0	15	93	6	51	34	0	10	55	1.34
39517961--39518109	71	2.1	71	94	0	262	33	19	18	28	1.95
39520634--39520819	40	4.7	40	86	5	225	24	20	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161