genome.fa.s22.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  22  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7098534--7098591	30	1.9	30	82	0	71	44	0	34	20	1.52
7098804--7098841	9	4.2	9	89	0	58	28	10	15	44	1.80
7106058--7106192	37	3.7	37	90	3	193	16	14	32	37	1.88
7111188--7111241	22	2.5	22	84	0	72	11	3	42	42	1.58
7111178--7111240	11	5.8	10	78	12	54	9	3	46	41	1.52
7124416--7124488	26	2.8	25	83	6	92	34	15	6	43	1.73
7136884--7137171	27	10.6	27	96	1	486	26	13	29	30	1.94
7145059--7145236	27	6.6	27	83	3	205	26	15	28	29	1.96
7145060--7145215	82	1.9	81	88	3	233	26	15	28	29	1.96
7145056--7145236	82	2.2	81	83	2	229	27	15	27	29	1.96
7152842--7152884	19	2.2	20	84	12	63	32	18	0	48	1.48
7158436--7158670	128	1.8	128	91	1	391	37	16	11	34	1.85
7161014--7161047	16	2.1	16	100	0	68	52	8	5	32	1.56
7170376--7170418	21	2.1	20	86	4	59	48	0	16	34	1.46
7170800--7170851	16	3.2	16	94	0	86	28	0	36	34	1.58
7170832--7170926	45	2.1	43	86	9	129	34	6	26	32	1.82
7171088--7171122	18	2.0	17	88	5	52	54	0	0	45	0.99
7171046--7171118	27	2.7	27	76	8	76	52	2	0	45	1.15
7171235--7171269	18	2.0	17	88	5	52	54	0	0	45	0.99
7171007--7171281	147	1.9	149	96	1	509	46	3	2	47	1.33
7175057--7175115	31	1.9	31	85	0	82	40	11	13	33	1.81
7179578--7179666	42	2.1	42	93	0	151	23	14	26	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7183850--7183988	50	2.8	50	84	0	179	21	30	21	25	1.98
7186304--7186339	17	2.1	17	100	0	72	58	0	5	36	1.22
7186938--7187035	45	2.2	45	81	7	110	42	9	19	28	1.82
7190633--7190670	13	2.8	13	88	11	51	60	10	0	28	1.30
7197147--7197186	18	2.2	18	86	0	53	42	2	20	35	1.65
7203322--7203366	18	2.5	18	77	0	54	35	2	20	42	1.64
7225065--7225134	34	2.1	34	88	0	104	32	32	15	18	1.93
7226720--7226786	32	2.1	32	94	0	116	53	14	0	31	1.42
7234073--7234105	13	2.3	15	85	15	52	75	3	0	21	0.93
7235860--7235885	8	3.2	8	100	0	52	23	0	0	76	0.78
7238830--7238863	17	2.0	17	88	0	50	73	5	0	20	1.04
7243663--7243705	9	4.7	9	97	2	77	11	0	23	65	1.25
7251396--7251480	42	2.0	41	86	2	116	24	16	25	32	1.96
7253089--7253152	33	1.9	34	87	9	96	43	0	18	37	1.51
7255955--7256006	18	2.9	18	79	0	59	11	21	30	36	1.89
7263759--7263894	71	1.9	71	90	0	218	29	7	27	36	1.84
7265935--7265992	20	3.1	20	69	19	61	41	18	6	32	1.78
7272900--7272944	14	3.5	13	79	14	58	68	0	0	31	0.89
7274622--7274784	87	1.9	87	85	1	229	36	20	13	28	1.91
7278441--7278492	22	2.4	21	74	6	50	21	19	28	30	1.97
7279937--7279961	12	2.1	12	100	0	50	48	0	32	20	1.50
7283400--7283591	94	2.0	94	98	0	375	29	14	28	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7297818--7298508	357	1.9	357	84	2	931	31	20	16	31	1.95
7303433--7303458	13	2.0	13	100	0	52	46	7	0	46	1.31
7305832--7305865	17	1.9	18	94	5	61	5	23	47	23	1.73
7306067--7306398	27	12.3	27	77	4	285	39	19	15	24	1.91
7306067--7306425	54	6.6	54	83	3	375	39	20	16	23	1.91
7306067--7306452	81	4.8	81	77	4	345	39	20	16	23	1.92
7306256--7306589	27	12.4	27	74	7	155	38	20	17	23	1.93
7306351--7306562	81	2.6	81	78	4	205	38	20	17	23	1.93
7306363--7306569	54	3.8	53	77	6	173	38	19	17	24	1.93
7306351--7306589	81	3.0	81	77	4	189	37	21	18	23	1.94
7306616--7306717	24	4.3	23	79	7	96	21	5	24	48	1.72
7306605--7306704	48	2.1	48	83	3	130	23	5	25	47	1.72
7306835--7306942	32	3.4	32	74	11	105	21	20	19	38	1.93
7325565--7325827	40	6.6	40	88	3	325	26	27	20	24	1.99
7327479--7327512	16	2.1	16	100	0	68	29	26	0	44	1.55
7343226--7343287	24	2.5	25	84	7	74	12	27	20	38	1.90
7347022--7347139	2	58.5	2	98	1	227	50	0	49	0	1.06
7347651--7347681	9	3.4	9	95	0	53	38	25	9	25	1.86
7347680--7347757	37	2.1	37	83	6	97	46	11	5	37	1.62
7349444--7349500	25	2.3	25	82	8	64	50	0	0	49	1.00
7349446--7349486	21	2.0	21	90	9	66	46	0	0	53	1.00
7349558--7349618	27	2.3	27	91	0	95	27	21	34	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7349747--7349781	3	12.3	3	88	11	56	65	0	34	0	0.93
7349737--7349785	8	6.2	8	86	9	66	65	0	34	0	0.93
7349950--7350001	16	3.2	16	94	0	86	28	0	36	34	1.58
7349982--7350091	45	2.6	43	80	9	129	33	5	29	31	1.80
7350218--7350259	15	2.7	16	82	14	52	52	2	0	45	1.13
7350227--7350268	15	2.9	15	82	10	52	52	0	0	47	1.00
7353382--7353420	19	2.1	19	95	0	69	43	10	46	0	1.37
7353602--7353829	61	3.8	61	98	1	442	30	0	13	56	1.38
7353684--7353785	34	3.2	34	62	18	92	32	0	11	55	1.36
7353805--7353887	21	4.0	21	93	6	150	28	0	13	57	1.36
7353744--7353955	102	2.1	102	83	7	261	30	0	13	56	1.38
7353805--7353953	41	3.6	41	74	16	155	30	0	13	56	1.38
7353905--7353966	11	5.6	12	70	16	53	33	0	9	56	1.32
7353855--7353949	33	3.0	33	80	13	121	33	0	13	52	1.41
7353855--7353966	33	3.5	33	79	12	85	33	0	12	54	1.38
7355150--7355240	30	3.0	30	90	1	137	19	45	2	32	1.63
7356050--7356442	196	2.0	196	100	0	786	27	13	20	38	1.90
7360157--7360198	20	2.0	22	90	9	70	0	21	2	76	0.90
7360624--7360662	16	2.5	15	87	4	51	79	7	12	0	0.93
7361515--7361687	37	4.5	36	66	26	95	28	7	2	60	1.38
7361497--7361758	122	2.1	122	96	1	481	28	8	3	60	1.41
7361497--7361803	122	2.5	122	88	6	365	29	7	3	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7363117--7363194	27	2.9	27	80	3	77	24	32	23	20	1.98
7363322--7363389	30	2.3	30	80	9	79	29	16	7	47	1.73
7365676--7365717	16	2.7	15	82	7	57	33	0	0	66	0.92
7369722--7369773	23	2.3	22	84	15	63	59	0	1	38	1.08
7370476--7370518	19	2.3	19	84	8	52	37	0	4	58	1.19
7371483--7371541	31	1.9	31	96	0	109	11	3	28	55	1.52
7375087--7375135	13	3.8	13	86	0	62	38	28	12	20	1.89
7378283--7378374	40	2.3	40	84	3	114	38	11	27	22	1.89
7379158--7379199	13	3.2	13	82	0	57	30	21	16	30	1.95
7381510--7381580	37	1.9	37	91	0	115	40	19	1	38	1.61
7386348--7386381	9	3.8	9	88	0	50	20	0	8	70	1.13
7389281--7389342	26	2.4	26	83	5	72	64	9	6	19	1.45
7391947--7391980	13	2.5	13	85	4	50	26	0	2	70	1.01
7398812--7398841	12	2.5	12	94	0	51	60	0	0	40	0.97
7415311--7415347	3	12.3	3	100	0	74	32	0	0	67	0.91
7415617--7415645	14	2.0	15	93	6	51	0	44	0	55	0.99
7418556--7418595	15	2.7	16	81	14	50	55	0	0	45	0.99
7424147--7424172	3	8.7	3	100	0	52	69	30	0	0	0.89
7424171--7424197	3	9.0	3	100	0	54	66	0	0	33	0.92
7424376--7424435	28	2.3	27	85	8	79	56	1	8	33	1.39
7424373--7424415	23	1.9	22	90	4	68	53	2	6	37	1.41
7424376--7424435	27	2.3	26	83	11	77	56	1	8	33	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7425103--7425160	22	2.6	22	81	7	64	41	17	5	36	1.72
7435566--7435618	19	2.8	20	80	8	65	32	30	18	18	1.96
7442684--7442738	28	1.9	29	85	3	76	69	1	0	29	0.99
7442701--7442762	13	4.7	13	84	8	63	70	0	0	29	0.87
7445442--7446145	137	5.2	138	79	3	663	24	18	26	31	1.98
7445514--7445713	68	2.9	67	68	15	165	24	17	26	32	1.97
7454587--7454679	36	2.5	36	77	10	89	32	23	15	29	1.95
7458115--7458313	43	4.7	43	81	1	213	39	14	18	28	1.89
7458101--7458287	86	2.2	86	84	4	252	37	14	18	28	1.91
7467178--7467204	5	5.4	5	100	0	54	59	0	0	40	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161