genome.fa.s22.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  46  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13912492--13912542	20	2.5	20	100	0	102	64	0	35	0	0.94
13912492--13912551	10	6.0	10	72	20	54	61	0	38	0	0.96
13912590--13912653	33	1.9	34	83	3	85	70	0	25	4	1.06
13912866--13913007	76	1.9	76	88	2	214	30	5	12	51	1.63
13918701--13919557	158	5.4	158	91	4	1325	28	8	8	54	1.59
13918702--13919557	314	2.7	317	91	4	1374	28	8	8	54	1.59
13919754--13919792	20	2.0	19	90	5	60	74	2	0	23	0.94
13919833--13919923	3	30.0	3	84	6	121	0	35	0	64	0.94
13924835--13924894	19	3.1	19	74	11	59	46	11	8	33	1.70
13947163--13947224	29	2.1	29	79	8	72	24	14	17	43	1.86
13948472--13948541	25	2.8	25	84	0	86	17	30	18	34	1.94
13948490--13948631	75	1.9	75	80	2	169	20	24	21	33	1.97
13952659--13952743	27	2.9	30	80	16	106	15	23	28	32	1.95
13952660--13952947	103	2.8	103	89	2	427	18	21	29	30	1.97
13958588--13958658	25	2.8	25	89	0	97	19	30	16	32	1.95
13968665--13968705	17	2.3	18	91	8	66	7	26	4	60	1.43
13969647--13969687	21	2.0	21	100	0	82	19	4	21	53	1.63
13970814--13970847	16	2.1	16	100	0	68	23	0	0	76	0.79
13975210--13975314	49	2.1	50	89	1	158	31	5	10	52	1.59
13976556--13976625	19	3.8	18	69	16	63	41	2	8	47	1.49
13976688--13976730	21	2.0	21	86	8	61	34	0	6	58	1.25
13976759--13976794	17	2.1	17	100	0	72	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13976920--13977103	59	3.1	59	71	12	185	40	1	5	52	1.34
13976943--13977130	61	3.1	61	71	11	197	42	1	5	51	1.34
13976947--13977131	56	3.1	59	70	20	184	41	1	5	51	1.34
13977374--13977419	16	2.9	16	90	0	74	26	30	6	36	1.82
13978900--13978955	19	2.7	20	76	21	53	41	1	16	41	1.58
13981062--13981101	20	2.0	20	85	0	53	47	20	2	30	1.63
13986412--13986465	19	2.8	19	100	0	108	9	31	37	22	1.86
13988390--13988439	26	2.0	25	84	4	64	56	2	10	32	1.44
13988401--13988457	22	2.6	22	77	0	69	52	1	7	38	1.39
13989574--13989611	13	2.9	13	88	0	58	39	26	10	23	1.87
13991176--13991225	26	2.0	25	84	4	64	56	2	10	32	1.44
13991179--13991242	22	2.8	23	76	9	69	51	1	9	37	1.44
13991939--13991966	14	2.0	14	100	0	56	14	42	7	35	1.73
13992125--13992163	21	1.9	21	89	5	62	74	0	17	7	1.05
13992947--13993143	88	2.2	88	92	0	331	24	22	20	31	1.98
13993035--13994775	132	13.2	132	95	0	3077	25	24	19	30	1.98
13992871--13993275	220	1.8	220	93	1	704	25	23	19	31	1.98
13993111--13994507	44	31.8	44	65	11	306	25	24	19	30	1.98
13996191--13996224	14	2.3	15	95	5	61	11	5	0	82	0.83
13997014--13997047	17	1.9	18	94	5	61	0	23	0	76	0.79
14002201--14002250	26	2.0	25	84	4	64	56	2	10	32	1.44
14002212--14002268	22	2.6	22	77	0	69	52	1	7	38	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14006865--14006963	41	2.4	41	77	3	101	36	26	18	19	1.94
14009035--14009094	30	2.0	31	90	3	95	38	0	41	20	1.52
14009304--14009340	9	4.1	9	92	0	65	29	10	13	45	1.77
14013384--14013524	50	2.8	49	82	3	174	30	28	18	22	1.97
14017425--14017576	25	6.2	25	71	17	113	36	21	23	18	1.95
14017449--14017563	50	2.3	50	82	11	148	36	20	23	19	1.95
14028425--14028462	18	2.1	18	100	0	76	21	34	10	34	1.87
14032785--14032835	3	17.0	3	100	0	102	33	0	0	66	0.92
14035846--14035923	29	2.7	28	75	16	79	65	1	3	29	1.18
14036847--14036872	12	2.2	12	100	0	52	57	0	7	34	1.27
14042361--14042473	25	4.5	25	82	6	113	23	22	20	33	1.97
14043838--14043940	52	2.0	52	80	0	116	23	15	28	33	1.95
14050443--14050513	29	2.4	29	86	9	92	29	15	23	30	1.95
14050466--14050554	29	3.0	29	81	3	79	25	12	25	35	1.91
14052092--14052165	33	2.2	33	85	4	96	16	27	14	41	1.87
14052115--14052180	33	2.0	33	84	0	87	16	25	15	42	1.87
14064081--14064126	23	2.0	22	83	4	56	43	2	13	41	1.55
14066507--14066705	43	4.7	43	76	10	178	32	24	18	25	1.97
14066506--14066700	85	2.3	84	86	3	257	33	24	18	24	1.97
14071281--14071314	16	2.2	16	89	5	52	26	5	11	55	1.58
14075676--14075760	24	3.6	24	71	25	90	43	8	10	37	1.69
14082861--14082981	48	2.5	49	86	2	154	51	3	3	42	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14083247--14083289	20	2.2	20	86	0	59	11	16	25	46	1.80
14087033--14087066	16	2.1	16	88	0	50	17	5	2	73	1.16
14087374--14087461	42	2.1	42	82	14	103	30	2	7	59	1.39
14094709--14094735	14	1.9	14	100	0	54	22	29	18	29	1.97
14095873--14096023	44	3.3	44	82	12	194	30	24	13	31	1.94
14095869--14096029	51	3.3	50	84	9	217	29	24	13	32	1.93
14104191--14104224	4	8.0	4	90	9	50	50	0	0	50	1.00
14104191--14104224	17	2.0	17	88	11	52	50	0	0	50	1.00
14107767--14107832	14	4.8	13	76	9	60	65	0	0	34	0.93
14113319--14113590	96	2.9	96	81	5	302	39	2	15	41	1.63
14113630--14114040	126	3.3	125	89	1	635	31	17	22	28	1.96
14115573--14115616	18	2.4	18	84	0	52	45	9	25	20	1.80
14115666--14115739	30	2.5	30	77	0	76	8	12	45	33	1.71
14116249--14116280	7	4.6	7	92	0	55	56	18	0	25	1.42
14116276--14116301	7	3.7	7	100	0	52	57	15	0	26	1.38
14116255--14116301	14	3.4	14	88	11	62	57	17	0	25	1.40
14117475--14117542	11	6.2	11	78	11	68	41	1	35	22	1.63
14117475--14117538	33	1.9	33	84	12	87	40	1	34	23	1.64
14122622--14122673	3	17.7	3	77	18	56	0	30	0	69	0.89
14123753--14124021	132	2.0	132	98	0	520	36	15	18	30	1.92
14125582--14125611	14	2.2	14	94	5	53	10	13	6	70	1.34
14129119--14129162	22	2.0	22	86	0	61	29	4	22	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14131627--14133219	792	2.0	793	96	0	2927	22	13	29	34	1.92
14135382--14135423	2	21.0	2	100	0	84	0	50	0	50	1.00
14142945--14143154	74	2.8	75	90	1	323	33	25	19	21	1.96
14143101--14143381	27	8.5	33	67	25	116	32	28	19	19	1.96
14143055--14143395	102	3.4	102	96	0	603	32	27	19	21	1.97
14150629--14151073	102	4.4	102	93	0	674	32	27	18	21	1.97
14150779--14151032	33	7.5	33	66	25	111	34	27	18	20	1.96
14150878--14150959	27	2.7	30	80	10	89	32	29	20	17	1.95
14150980--14151061	27	2.7	30	80	10	89	32	29	20	17	1.95
14151085--14151199	58	2.0	58	96	0	212	26	29	10	33	1.89
14162259--14162519	88	3.0	88	84	0	378	31	19	26	22	1.98
14162262--14162508	132	1.9	132	90	0	395	31	19	25	23	1.98
14162259--14162519	44	5.9	44	85	0	342	31	19	26	22	1.98
14162276--14162563	132	2.2	132	83	0	351	30	19	25	23	1.98
14162259--14162563	88	3.5	87	81	2	324	31	19	25	23	1.98
14164043--14164082	18	2.2	18	90	0	62	7	2	7	82	0.92
14175542--14175780	41	5.8	41	80	3	266	35	15	27	21	1.94
14175542--14175778	123	1.9	122	83	5	307	35	15	27	21	1.94
14179751--14179998	50	4.8	50	83	3	271	28	20	28	22	1.99
14180247--14180285	12	3.2	12	85	0	51	51	5	23	20	1.67
14184638--14184703	29	2.3	29	89	0	96	37	13	25	22	1.91
14187928--14188083	45	3.5	45	83	1	161	40	13	22	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14188306--14188407	41	2.5	40	82	4	114	18	17	23	40	1.91
14197563--14197678	45	2.6	45	74	0	106	46	18	17	17	1.84
14197649--14197773	46	2.8	45	79	4	153	32	20	20	25	1.97
14198025--14198164	41	3.4	41	82	5	167	17	16	28	37	1.91
14198530--14198571	22	1.9	22	100	0	84	16	14	16	52	1.75
14202944--14202968	7	3.6	7	100	0	50	60	12	0	28	1.32
14204184--14204257	22	3.4	22	85	9	98	43	0	32	24	1.55
14204097--14204212	51	2.3	51	95	0	205	46	0	25	28	1.53
14204200--14204256	10	5.2	11	74	21	57	43	0	35	21	1.52
14205567--14205604	5	7.6	5	100	0	76	21	0	0	78	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161