genome.fa.s22.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  134  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41714486--41714607	42	2.9	42	86	4	149	15	22	18	42	1.88
41714534--41714602	21	3.3	21	77	0	66	15	21	20	42	1.89
41714576--41714616	21	2.0	21	85	0	55	14	17	21	46	1.84
41718844--41718893	25	2.0	25	84	0	64	30	18	26	26	1.98
41718878--41719012	24	5.5	24	68	11	67	34	17	28	20	1.95
41719119--41719166	24	2.0	24	83	4	60	33	18	25	22	1.97
41728624--41728656	4	8.2	4	87	12	50	75	0	0	24	0.80
41728649--41728840	73	2.6	73	79	8	187	58	5	9	26	1.51
41731202--41731464	101	2.6	101	85	1	323	30	15	25	28	1.96
41740535--41740603	16	4.2	16	96	3	129	24	0	37	37	1.56
41740535--41740603	33	2.1	32	97	2	129	24	0	37	37	1.56
41740584--41740674	45	2.0	45	85	2	121	27	6	28	37	1.82
41740819--41740873	15	3.4	16	80	16	53	54	1	0	43	1.10
41740825--41740873	16	2.9	18	80	20	61	55	0	0	44	0.99
41747037--41747153	59	2.0	60	84	5	157	33	9	20	36	1.85
41767633--41767677	24	2.0	24	87	12	69	64	0	2	33	1.06
41770988--41771035	24	2.0	24	100	0	96	20	25	16	37	1.93
41770993--41771046	24	2.3	24	83	3	65	27	18	16	37	1.93
41773077--41773119	19	2.2	20	87	4	61	27	2	0	69	1.00
41773084--41773124	20	2.0	21	86	9	59	29	0	2	68	1.03
41773667--41773693	4	6.8	4	100	0	54	77	0	0	22	0.76
41776601--41776633	5	6.4	5	93	6	57	0	39	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41776597--41776633	16	2.3	16	95	0	65	0	40	0	59	0.97
41778734--41778987	126	2.0	126	99	0	499	26	18	24	29	1.98
41788570--41788614	21	2.1	22	84	12	58	6	20	0	73	1.05
41791105--41791136	16	2.0	16	93	0	55	28	15	12	43	1.83
41796478--41796507	15	2.0	15	93	0	51	63	0	3	33	1.11
41797809--41797847	21	1.9	20	84	5	51	58	2	5	33	1.33
41799606--41799645	19	2.1	19	90	4	62	67	0	32	0	0.91
41799681--41799719	20	2.0	20	85	10	53	64	2	30	2	1.21
41800086--41800134	25	2.0	25	83	0	62	38	0	16	44	1.48
41803026--41803119	49	1.9	49	88	0	143	42	8	25	23	1.82
41804004--41804084	23	3.5	23	89	0	108	25	24	16	33	1.96
41810251--41810412	68	2.4	69	81	5	177	17	20	22	39	1.92
41816019--41816133	43	2.7	43	80	8	117	26	30	20	22	1.98
41820065--41820129	31	2.1	30	83	8	78	32	7	1	58	1.36
41820775--41820837	25	2.5	25	82	10	83	22	12	17	47	1.81
41820973--41821033	30	2.0	30	100	0	122	19	19	16	44	1.87
41822124--41822282	80	2.0	80	93	0	273	39	20	6	33	1.79
41823132--41823204	38	1.9	37	86	8	103	31	19	1	47	1.58
41823305--41823626	45	7.2	45	86	0	414	34	25	16	23	1.95
41830564--41830628	32	2.0	32	100	0	130	33	3	29	33	1.73
41831260--41831333	34	2.1	35	82	2	87	21	24	24	29	1.99
41835409--41835460	21	2.5	21	82	14	63	30	1	1	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41837831--41837868	6	6.3	6	96	0	67	13	50	18	18	1.78
41846323--41846360	20	1.9	20	88	0	58	28	10	13	47	1.76
41849134--41849197	3	20.7	3	74	15	51	60	1	32	4	1.26
41849134--41849195	25	2.4	25	73	21	65	61	1	32	4	1.27
41850665--41850733	27	2.6	27	85	0	93	18	34	28	17	1.94
41850786--41850928	4	36.2	4	73	20	65	67	0	32	0	0.91
41850796--41850868	5	15.4	5	76	7	64	67	0	32	0	0.91
41850785--41850927	38	3.7	38	77	13	141	67	0	32	0	0.91
41850786--41850923	10	13.8	10	70	17	72	68	0	31	0	0.90
41851253--41851811	158	3.5	159	76	11	612	52	7	10	30	1.62
41851763--41851855	43	2.1	44	82	9	109	52	3	12	31	1.55
41853557--41853607	6	8.5	6	91	0	75	29	50	19	0	1.48
41857148--41857253	42	2.6	39	78	10	113	50	13	4	32	1.62
41863551--41863589	18	2.1	18	86	13	53	33	0	2	64	1.08
41864252--41864311	30	2.0	30	96	0	111	56	15	3	25	1.54
41864348--41864374	14	1.9	14	100	0	54	51	14	7	25	1.68
41870580--41870629	25	2.0	25	84	0	64	8	26	14	52	1.68
41870598--41870639	20	2.1	20	86	0	57	4	26	16	52	1.63
41876466--41876498	8	4.1	8	88	11	50	66	0	0	33	0.92
41876468--41876499	9	3.7	9	91	8	57	68	0	0	31	0.90
41881426--41881497	36	2.0	36	97	0	135	43	29	0	27	1.56
41882468--41882506	2	19.5	2	100	0	78	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41883039--41883076	3	12.7	3	100	0	76	68	0	0	31	0.90
41883650--41883685	3	12.0	3	100	0	72	33	0	0	66	0.92
41887805--41887908	39	2.7	39	77	5	104	26	6	24	42	1.79
41891625--41892006	69	5.5	69	78	1	343	20	21	24	32	1.97
41891624--41892119	138	3.6	139	78	3	459	20	21	24	33	1.97
41891622--41892123	69	7.3	68	75	3	322	20	21	24	33	1.97
41891695--41892072	207	1.8	207	80	1	452	20	21	25	33	1.97
41891681--41892123	207	2.1	207	77	1	449	20	21	24	33	1.97
41900373--41900423	26	2.0	26	100	0	102	35	17	11	35	1.87
41905816--41905890	39	1.9	38	86	10	107	54	1	4	40	1.27
41907074--41907099	6	4.3	6	100	0	52	61	38	0	0	0.96
41908988--41909085	31	3.3	31	70	21	91	51	19	11	18	1.76
41910245--41910311	30	2.2	30	82	10	75	35	26	4	32	1.77
41916077--41916206	61	2.1	62	94	2	228	23	9	15	51	1.72
41916805--41917182	195	1.9	196	88	2	573	39	8	15	35	1.79
41920037--41920092	24	2.2	24	87	6	76	58	1	0	39	1.08
41920029--41920092	25	2.6	26	85	7	80	59	1	0	39	1.07
41925105--41925139	16	2.2	16	90	10	54	25	28	5	40	1.78
41929769--41929800	7	4.6	7	96	0	55	15	9	59	15	1.60
41932712--41932803	34	2.7	34	83	3	105	40	10	10	38	1.75
41936914--41936951	16	2.4	17	82	13	53	68	0	28	2	1.03
41943823--41943850	6	4.7	6	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41943805--41943851	12	3.4	14	82	14	62	27	0	4	68	1.08
41948003--41948155	43	3.6	43	83	0	171	29	22	17	30	1.97
41948039--41948292	43	5.9	42	78	7	210	29	19	20	30	1.97
41951904--41951950	24	1.9	24	86	4	67	36	0	38	25	1.56
41952590--41952810	27	8.2	26	82	6	217	41	21	17	19	1.90
41952590--41952812	54	4.1	54	85	3	270	41	21	17	19	1.91
41952590--41952812	81	2.8	80	84	2	295	41	21	17	19	1.91
41961629--41961783	42	3.7	42	75	5	127	20	35	20	23	1.96
41961811--41961943	61	2.2	61	94	0	230	23	32	19	24	1.98
41961811--41961966	61	2.6	61	88	0	177	19	32	21	26	1.97
41966932--41967055	61	2.0	61	90	0	194	25	35	18	20	1.95
41980199--41980224	13	2.0	13	100	0	52	46	7	23	23	1.78
41986882--41986910	5	5.8	5	100	0	58	0	37	0	62	0.96
41996563--41996706	72	2.0	72	97	0	270	40	13	22	22	1.89
41996805--41996877	31	2.4	31	86	2	94	39	13	9	36	1.78
41996874--41996913	21	1.9	21	85	10	55	32	5	7	55	1.50
41999329--41999369	20	2.0	20	100	0	82	31	24	9	34	1.88
42005870--42005951	24	3.5	23	83	5	92	21	4	23	50	1.68
42006077--42006132	26	2.2	26	83	0	67	16	21	26	35	1.94
42006123--42006346	32	7.0	32	81	4	254	21	20	20	37	1.94
42006407--42006459	26	2.0	26	85	0	70	20	28	18	32	1.97
42011140--42011299	85	1.9	83	86	8	229	21	11	20	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42012010--42012124	43	2.7	43	76	12	128	22	19	29	28	1.98
42015477--42015510	17	1.9	18	88	5	52	35	23	0	41	1.55
42015988--42016046	3	20.7	3	77	16	54	57	1	0	40	1.09
42015988--42016047	8	7.1	8	74	22	52	56	1	0	41	1.09
42015978--42016047	13	5.3	13	77	19	65	54	1	1	42	1.18
42016018--42016043	5	5.2	5	100	0	52	61	0	0	38	0.96
42031406--42031437	12	2.6	13	85	14	50	50	0	15	34	1.45
42040261--42040617	178	2.0	178	98	0	696	38	4	15	41	1.67
42040903--42041106	41	5.0	40	79	12	209	28	20	26	24	1.99
42040918--42041106	82	2.3	82	93	0	324	28	20	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161