genome.fa.s22.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  99  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31234141--31234169	14	2.1	14	100	0	58	51	6	20	20	1.70
31238475--31238548	29	2.5	29	77	16	71	36	9	8	45	1.66
31240907--31241053	76	1.9	76	80	5	172	36	20	17	25	1.94
31241753--31241851	43	2.3	42	84	6	126	26	28	26	19	1.99
31242230--31242277	20	2.4	20	100	0	96	35	25	4	35	1.75
31248640--31248703	26	2.4	27	86	2	94	26	31	15	26	1.96
31257927--31257987	28	2.2	28	93	0	104	54	4	31	9	1.55
31261614--31261877	130	2.0	130	94	0	465	28	26	10	35	1.89
31273515--31273629	43	2.7	43	73	11	101	26	20	25	28	1.99
31281177--31281206	15	2.0	15	93	0	51	76	0	16	6	0.99
31285984--31286016	14	2.4	14	100	0	66	18	15	21	45	1.85
31289581--31289620	9	4.4	9	83	0	53	35	0	17	47	1.48
31290204--31290244	21	2.0	21	85	9	57	36	19	24	19	1.95
31290466--31290500	18	1.9	18	88	0	52	34	11	37	17	1.85
31293609--31293642	18	1.9	18	88	5	52	52	2	5	38	1.41
31297635--31297665	13	2.4	13	94	0	53	35	48	16	0	1.46
31298674--31298918	29	8.4	29	80	4	242	23	27	12	36	1.91
31298688--31298918	87	2.6	87	86	5	322	23	27	11	37	1.90
31301811--31301900	29	3.1	29	85	3	119	21	24	15	38	1.92
31301934--31302005	29	2.5	29	84	4	92	26	25	9	38	1.86
31306995--31307024	14	2.2	13	94	5	51	40	6	10	43	1.64
31309195--31309248	28	2.0	27	85	3	72	44	11	1	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31309151--31309445	145	2.1	143	85	2	396	38	10	10	39	1.75
31309320--31309382	32	2.0	32	84	6	83	42	7	6	42	1.59
31309620--31309807	43	4.4	43	82	0	214	38	25	10	25	1.88
31309585--31309807	86	2.6	86	84	4	254	37	25	11	25	1.89
31311149--31311345	98	2.0	98	93	0	340	37	23	10	28	1.88
31312677--31312749	19	3.8	19	87	0	110	36	12	9	41	1.75
31312670--31312749	38	2.2	37	90	4	126	37	11	8	42	1.72
31315355--31315403	19	2.5	19	90	3	71	16	4	6	73	1.19
31315795--31315871	7	10.9	7	73	8	57	40	40	0	19	1.52
31315797--31315840	22	2.1	21	87	8	63	38	38	0	22	1.55
31315818--31315871	28	1.9	28	85	7	74	40	42	0	16	1.48
31315795--31315905	7	15.6	7	73	7	53	41	35	0	23	1.55
31316030--31316146	7	16.6	7	71	11	60	43	35	0	21	1.53
31316030--31316146	14	8.3	14	71	12	71	43	35	0	21	1.53
31321447--31321566	64	1.9	64	91	0	195	35	25	20	18	1.95
31324057--31324295	51	4.7	51	80	4	252	29	26	17	26	1.98
31324056--31324298	101	2.4	102	86	1	337	30	26	17	26	1.97
31329784--31330045	144	1.8	144	81	8	327	40	17	9	32	1.83
31333679--31333733	29	1.9	29	82	10	69	45	1	10	41	1.50
31333698--31333814	34	3.4	34	82	6	130	41	0	15	42	1.53
31333691--31333823	34	4.0	33	80	9	119	42	0	13	42	1.49
31333908--31334431	126	4.2	126	87	1	692	38	16	16	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31337928--31337963	18	2.0	18	94	0	63	38	5	25	30	1.78
31338656--31338693	11	3.6	11	82	13	53	36	0	15	47	1.46
31338663--31338692	15	2.1	14	93	6	51	33	0	16	50	1.46
31339353--31339456	53	2.0	53	94	0	181	16	23	22	38	1.93
31340439--31340487	19	2.6	19	83	0	62	36	34	14	14	1.86
31347702--31347752	20	2.5	20	83	3	66	45	3	0	50	1.20
31353579--31353700	61	2.0	61	98	0	235	48	15	1	34	1.55
31354231--31354314	21	4.0	21	81	4	89	39	23	20	16	1.92
31354271--31354314	23	1.9	23	95	0	79	40	20	20	18	1.91
31355346--31355383	20	2.0	20	89	5	60	15	5	2	76	1.08
31356154--31356188	7	4.7	7	86	13	52	31	0	0	68	0.90
31356175--31356204	12	2.6	12	94	5	53	36	6	0	56	1.26
31356881--31357083	108	1.9	107	85	4	286	28	19	18	33	1.95
31361356--31362439	50	21.7	50	71	4	754	31	22	21	23	1.98
31361348--31362455	100	11.1	100	88	1	1467	31	22	21	23	1.98
31362456--31362766	128	2.4	129	90	2	473	32	23	20	23	1.98
31364278--31364307	12	2.6	12	94	5	53	36	6	0	56	1.26
31364982--31365185	108	1.9	107	89	3	322	28	19	18	34	1.95
31365715--31365746	16	2.1	16	94	5	57	40	0	0	59	0.97
31365702--31365754	27	2.1	26	86	10	74	43	0	0	56	0.99
31366620--31366807	50	3.8	50	82	2	209	20	28	23	27	1.99
31392541--31392574	4	8.5	4	93	0	59	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31414875--31414907	16	2.0	17	94	5	59	30	15	0	54	1.41
31417941--31417966	12	2.2	12	100	0	52	34	15	15	34	1.89
31419563--31419804	50	4.7	50	78	6	186	24	26	20	28	1.99
31420143--31420199	30	1.9	29	85	3	78	33	21	1	43	1.63
31428789--31428824	18	1.9	19	88	5	56	50	19	5	25	1.69
31432172--31432209	20	1.9	20	89	10	60	21	21	10	47	1.80
31434783--31434827	23	2.0	23	81	0	54	46	15	0	37	1.46
31437835--31437879	21	2.1	21	95	0	81	44	13	2	40	1.56
31438409--31438449	3	13.7	3	100	0	82	31	34	0	34	1.58
31443589--31443624	14	2.6	14	95	0	63	22	5	11	61	1.50
31443687--31443751	27	2.4	27	92	2	105	29	12	12	46	1.78
31444726--31444835	54	2.0	54	87	0	157	26	10	8	54	1.63
31446823--31446864	21	2.0	21	86	9	59	64	2	2	30	1.19
31447368--31447405	16	2.4	16	90	0	58	52	15	0	31	1.43
31447381--31447432	16	3.2	16	73	13	52	48	25	1	25	1.62
31450016--31450113	43	2.3	43	80	7	119	28	24	17	29	1.97
31450075--31450144	32	2.2	33	84	2	88	28	22	17	31	1.96
31456084--31456135	26	2.0	26	85	7	70	53	26	5	13	1.62
31465311--31465365	27	2.0	27	96	0	101	25	27	16	30	1.96
31466254--31466292	17	2.3	17	86	0	51	25	2	5	66	1.25
31467323--31467373	2	25.0	2	82	11	59	50	3	1	43	1.31
31469739--31469784	23	2.0	23	87	8	67	39	17	4	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31478785--31478955	27	6.3	27	76	11	127	28	25	11	35	1.90
31478794--31478946	81	1.9	81	88	0	234	30	24	9	35	1.87
31478816--31478919	54	1.9	55	84	5	140	29	25	6	37	1.82
31480192--31480254	31	2.0	32	96	3	119	34	30	9	25	1.88
31482096--31482137	21	2.0	21	86	9	59	57	0	2	40	1.12
31486334--31486513	50	3.6	50	79	2	175	24	26	20	28	1.99
31507905--31507935	15	2.1	15	93	0	53	70	0	3	25	1.02
31514235--31514643	27	15.2	27	79	0	406	19	15	22	42	1.88
31518541--31518585	19	2.4	18	85	14	56	44	4	0	51	1.21
31521261--31521314	13	4.1	13	78	4	54	20	7	3	68	1.30
31521591--31521627	13	2.8	14	84	8	51	48	5	5	40	1.49
31525426--31525454	3	9.7	3	100	0	58	31	34	0	34	1.58
31530482--31530513	12	2.7	12	95	0	55	31	43	18	6	1.75
31531599--31531631	17	2.0	17	94	5	59	18	0	3	78	0.87
31562561--31562667	53	2.0	53	94	0	187	45	14	14	25	1.82
31567197--31567290	45	2.1	45	87	0	134	31	27	21	19	1.97
31571968--31572099	45	3.0	43	80	8	124	34	25	16	24	1.96
31578185--31578291	42	2.5	42	81	0	124	23	21	33	21	1.97
31583525--31583958	40	10.9	40	99	0	852	27	20	27	24	1.99
31590655--31590897	50	4.9	50	84	1	317	25	22	30	20	1.99
31593932--31593956	13	1.9	13	100	0	50	40	24	4	32	1.73
31598746--31598815	30	2.3	30	82	0	86	24	28	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31598767--31598833	30	2.2	29	80	12	73	22	31	20	25	1.98
31600219--31600396	27	6.6	27	84	3	205	29	28	15	26	1.96
31600240--31600395	82	1.9	81	88	3	233	29	28	15	26	1.96
31617729--31617807	30	2.7	29	82	3	86	25	29	10	35	1.88
31623793--31624056	40	6.7	40	89	5	360	25	27	21	25	1.99
31631860--31632044	79	2.3	82	84	7	238	25	27	22	24	2.00
31631841--31632044	40	5.1	40	82	8	238	25	27	22	25	2.00
31636069--31636205	25	5.5	25	78	0	132	25	22	19	32	1.98
31636078--31636205	50	2.6	50	84	1	168	25	22	20	31	1.98
31646655--31646742	40	2.2	40	88	8	126	10	14	27	47	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161