genome.fa.s22.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  98  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30987470--30987495	3	8.7	3	100	0	52	0	69	0	30	0.89
30999201--30999249	6	8.2	6	95	0	89	63	0	20	16	1.31
31002391--31002416	13	2.0	13	100	0	52	0	0	30	69	0.89
31002650--31002695	23	2.0	23	95	0	83	26	23	4	45	1.71
31016035--31016068	7	4.9	7	88	0	50	32	0	35	32	1.58
31018295--31018425	41	3.2	41	81	4	149	21	22	4	51	1.65
31020126--31020164	19	2.1	19	90	0	60	25	30	15	28	1.96
31022957--31023087	41	3.2	41	80	6	151	19	22	6	51	1.70
31028159--31028343	101	1.8	102	88	3	284	23	17	27	30	1.97
31028159--31028343	51	3.7	50	75	9	153	23	17	27	30	1.97
31030951--31031003	21	2.5	21	93	0	88	20	5	13	60	1.53
31034246--31034275	12	2.5	12	94	0	51	6	23	40	30	1.80
31035023--31035067	17	2.7	17	89	3	65	22	33	20	24	1.97
31039890--31039994	51	2.0	53	85	3	142	30	36	18	15	1.91
31041449--31041586	45	3.1	45	80	8	181	36	21	20	21	1.95
31041439--31041652	90	2.4	90	88	1	297	37	19	20	22	1.94
31042190--31042351	28	5.9	28	84	5	143	57	8	14	19	1.63
31042211--31042351	28	5.1	28	86	4	162	60	8	13	17	1.57
31042190--31042351	54	2.9	54	82	6	157	57	8	14	19	1.63
31042211--31042351	54	2.6	55	82	7	160	60	8	13	17	1.57
31042767--31042856	45	2.0	45	100	0	180	35	13	22	28	1.92
31043176--31043252	24	3.2	24	87	8	120	55	0	19	24	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31045832--31045912	43	1.9	42	82	2	99	30	6	27	35	1.81
31046138--31046182	6	7.5	6	97	0	81	17	2	15	64	1.39
31046132--31046171	18	2.2	18	90	0	62	20	2	12	65	1.38
31047302--31047384	26	3.1	25	79	8	76	27	8	16	46	1.76
31047402--31047479	26	3.0	25	84	7	84	29	7	15	47	1.73
31047272--31047536	96	2.8	96	95	0	487	25	6	19	47	1.74
31047577--31047631	28	2.0	28	88	0	83	29	7	18	45	1.76
31048299--31048368	21	3.5	20	72	20	74	37	41	11	10	1.75
31048310--31048368	18	3.1	18	75	13	64	37	38	13	10	1.79
31061951--31062178	42	5.3	43	83	2	253	31	19	23	25	1.98
31061970--31062178	85	2.5	85	82	1	267	33	18	22	25	1.97
31062101--31062235	43	3.2	43	80	3	130	30	22	19	27	1.98
31062658--31062685	12	2.3	12	100	0	56	0	42	17	39	1.50
31062670--31062714	21	2.1	21	87	0	63	2	44	20	33	1.63
31062794--31062928	43	3.2	43	80	3	130	30	22	19	27	1.98
31062066--31063450	692	2.0	693	98	0	2709	30	20	14	34	1.93
31063350--31063377	12	2.3	12	100	0	56	0	42	17	39	1.50
31063362--31063406	21	2.1	21	87	0	63	2	44	20	33	1.63
31064208--31064347	41	3.4	41	89	3	219	37	22	25	14	1.92
31064431--31064472	20	2.1	20	86	8	59	14	30	33	21	1.93
31065022--31065091	34	2.1	34	89	5	106	51	25	0	22	1.48
31065678--31065958	149	1.9	149	87	3	409	33	8	7	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31079710--31079739	13	2.2	14	94	5	53	40	10	0	50	1.36
31084131--31084167	13	2.8	13	100	0	74	81	5	0	13	0.86
31084122--31084218	43	2.3	43	80	7	108	74	5	5	15	1.18
31084138--31084204	13	4.7	15	77	18	65	77	5	2	13	1.07
31084131--31084215	13	6.2	13	80	14	59	76	4	3	15	1.09
31084328--31084449	42	2.9	42	87	2	165	35	13	26	25	1.92
31085667--31086024	50	7.2	50	70	3	222	29	20	23	26	1.99
31085659--31086024	100	3.7	98	85	5	468	29	20	23	26	1.99
31085662--31086024	199	1.8	200	83	5	493	29	20	23	26	1.99
31086035--31086265	41	5.5	41	70	13	130	30	19	20	30	1.97
31086022--31086321	44	7.0	43	69	6	162	33	18	20	28	1.96
31086015--31086365	128	2.8	127	84	2	463	32	18	20	28	1.96
31086854--31086893	18	2.2	18	95	0	71	25	52	17	5	1.64
31087776--31087860	3	28.7	3	75	11	77	31	3	1	63	1.19
31087822--31087856	17	2.1	17	100	0	70	34	0	0	65	0.93
31087777--31087859	20	4.0	21	80	6	91	32	3	1	62	1.20
31088226--31088273	25	1.9	25	83	8	62	45	6	2	45	1.40
31096932--31097383	227	2.0	227	97	0	859	24	24	19	32	1.98
31097639--31097743	51	2.1	50	89	1	156	26	10	22	40	1.86
31099961--31100151	61	3.2	60	69	12	167	42	3	5	48	1.43
31099917--31100182	120	2.2	120	95	0	478	42	2	4	50	1.36
31100164--31100207	21	2.1	21	83	8	54	40	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31100304--31100397	44	2.1	44	92	4	152	35	29	5	29	1.80
31100379--31100416	16	2.4	16	95	0	67	26	34	2	36	1.71
31101470--31101508	21	1.9	21	89	5	62	51	7	0	41	1.31
31105476--31105514	5	7.6	5	82	5	51	41	0	17	41	1.50
31105954--31106009	26	2.2	26	87	9	80	17	23	21	37	1.94
31106087--31106147	24	2.5	24	76	10	70	16	24	21	37	1.93
31106160--31106238	27	3.0	27	81	7	92	27	22	18	30	1.98
31109181--31109238	14	4.0	14	91	8	98	43	13	13	29	1.83
31113513--31113557	21	2.1	22	84	12	58	66	8	11	13	1.44
31116358--31116595	67	3.6	67	94	0	386	40	16	23	19	1.91
31116355--31116595	35	7.2	33	81	8	272	40	16	24	19	1.90
31118401--31118448	18	2.7	18	83	0	60	41	20	22	14	1.89
31119894--31119931	3	12.7	3	88	0	58	68	5	0	26	1.11
31119894--31119931	12	3.2	12	96	0	67	68	5	0	26	1.11
31123355--31123393	15	2.6	16	84	12	55	30	10	2	56	1.46
31126252--31126458	47	4.3	47	80	6	184	29	28	16	25	1.97
31128022--31128310	50	5.7	50	84	3	339	27	22	28	22	1.99
31129772--31129840	24	2.8	24	77	12	61	39	20	21	18	1.93
31138771--31138846	11	6.8	11	68	24	52	55	2	1	40	1.22
31138751--31138846	48	1.9	51	85	6	135	54	4	2	39	1.32
31140444--31140475	15	2.1	15	94	0	55	71	6	6	15	1.26
31141963--31141987	13	1.9	13	100	0	50	32	4	24	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31142999--31143061	25	2.5	25	94	0	117	38	7	11	42	1.70
31143745--31143885	41	3.4	41	90	0	219	29	20	26	24	1.99
31158263--31158302	19	2.2	19	86	4	55	45	0	5	50	1.23
31158391--31158479	44	2.0	44	84	4	117	44	8	1	44	1.42
31159998--31160044	21	2.3	21	85	3	69	53	2	4	40	1.32
31160041--31160160	30	3.9	31	73	17	108	42	0	1	55	1.16
31160036--31160097	22	2.9	21	74	9	63	45	0	0	54	0.99
31170225--31170253	14	2.1	14	100	0	58	27	37	6	27	1.82
31171015--31171051	16	2.3	16	95	0	65	59	0	0	40	0.97
31171303--31171333	13	2.4	13	94	0	53	22	0	3	74	0.96
31183051--31183089	6	6.5	6	93	0	69	12	0	35	51	1.40
31183043--31183083	18	2.3	18	91	0	64	12	2	36	48	1.54
31192613--31192990	188	2.0	188	100	0	756	32	13	13	41	1.83
31197127--31197179	27	2.0	27	92	0	88	37	16	13	32	1.88
31201988--31202251	40	6.7	40	89	5	360	25	27	21	25	1.99
31210049--31210226	27	6.6	27	84	3	205	29	28	15	26	1.96
31210070--31210225	82	1.9	81	88	3	233	29	28	15	26	1.96
31210708--31210734	12	2.2	12	100	0	54	40	0	7	51	1.30
31215075--31215108	13	2.4	15	90	9	54	73	2	5	17	1.16
31220006--31220093	18	4.6	19	68	16	58	34	1	3	61	1.20
31219982--31220085	36	2.8	37	77	15	92	35	0	3	59	1.22
31220022--31220101	20	4.3	19	68	17	60	35	1	3	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31223769--31223793	5	5.0	5	100	0	50	0	80	0	20	0.72
31223893--31223952	30	2.0	31	86	3	86	20	40	0	40	1.52
31226778--31226842	30	2.2	30	91	0	103	60	12	1	26	1.41
31228481--31228544	17	3.6	17	74	15	67	28	12	12	46	1.78
31228473--31228541	36	1.9	36	96	0	129	27	13	13	46	1.79
31228473--31228524	19	2.9	18	72	16	54	26	13	13	46	1.80
31232010--31232632	314	2.0	314	94	0	1084	28	21	26	23	1.99
31233901--31233964	17	3.6	17	72	15	58	29	12	10	46	1.76
31233893--31233961	36	1.9	36	93	0	120	28	13	11	46	1.78
31233893--31233944	19	2.9	18	72	16	54	26	13	13	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161