genome.fa.s22.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  57  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17787546--17787622	40	1.9	40	86	0	109	35	10	9	45	1.70
17793894--17794061	42	4.0	42	78	8	180	47	16	21	14	1.83
17793999--17794071	21	3.5	21	64	7	58	49	17	16	16	1.80
17794266--17794353	45	1.9	46	84	6	117	44	12	3	39	1.59
17797360--17797448	27	3.2	26	68	20	63	19	30	16	33	1.94
17797340--17797454	58	2.0	56	88	6	169	21	29	15	33	1.95
17797347--17797477	58	2.3	58	84	7	160	22	31	16	29	1.96
17797621--17797732	50	2.3	49	80	1	125	23	23	20	33	1.98
17798894--17798926	17	1.9	17	93	0	57	39	0	6	54	1.25
17814102--17814377	137	2.0	139	89	4	425	44	6	9	39	1.62
17818331--17818379	19	2.6	19	90	0	71	12	32	34	20	1.90
17820507--17820539	17	1.9	17	88	11	50	36	0	9	54	1.32
17820605--17820920	137	2.3	137	87	2	490	43	5	10	40	1.63
17823426--17824222	399	2.0	400	96	0	1479	27	19	20	32	1.97
17828296--17828327	11	2.8	11	95	4	55	65	0	18	15	1.27
17837434--17837497	20	3.1	20	73	6	65	43	17	12	26	1.84
17838305--17838377	30	2.3	32	84	9	89	27	23	36	12	1.90
17840710--17840761	18	2.7	20	74	14	56	57	0	0	42	0.98
17855906--17855950	14	2.9	16	87	9	58	42	8	0	48	1.34
17855904--17855950	16	2.9	16	81	12	53	42	8	0	48	1.33
17856076--17856105	4	7.5	4	100	0	60	46	0	0	53	1.00
17856502--17856532	14	2.2	14	94	0	53	45	22	3	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17866560--17866843	50	5.6	50	88	2	381	29	25	16	28	1.97
17874291--17874625	51	6.6	50	80	7	318	28	25	16	29	1.97
17874282--17874625	102	3.4	101	85	2	415	28	25	16	29	1.97
17875096--17875156	29	2.0	31	81	6	72	27	19	6	45	1.75
17875824--17875856	11	2.8	12	90	9	50	39	15	9	36	1.79
17881117--17881289	78	2.3	78	84	3	226	37	24	14	23	1.92
17881182--17881239	28	2.1	28	87	6	82	39	22	10	27	1.86
17881150--17881299	25	5.9	26	67	17	100	37	24	13	24	1.91
17881206--17881312	50	2.1	50	79	3	126	39	23	13	24	1.90
17886652--17886884	50	4.7	50	77	5	222	39	19	15	25	1.91
17886804--17886912	25	4.4	25	69	19	84	37	19	16	26	1.93
17888504--17888553	26	2.0	26	85	14	70	46	20	0	34	1.51
17897542--17897646	21	5.1	20	62	4	57	30	18	31	20	1.96
17897563--17897629	20	3.3	20	68	4	53	34	16	34	14	1.90
17897539--17897646	41	2.6	41	92	0	180	32	17	30	19	1.95
17899865--17899904	21	1.9	21	89	0	62	25	2	2	70	1.13
17902398--17902427	15	2.0	15	93	0	51	63	6	16	13	1.50
17902470--17902525	21	2.7	21	83	8	78	51	1	12	33	1.50
17902517--17902566	14	3.6	13	84	7	55	38	0	28	34	1.57
17905231--17905283	12	4.5	12	81	13	74	7	13	20	58	1.59
17906877--17906909	15	2.2	15	100	0	66	18	9	12	60	1.57
17906923--17906982	25	2.4	25	91	0	93	13	10	16	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17906934--17906982	10	5.4	10	72	22	54	10	12	16	61	1.57
17906938--17906991	25	2.2	25	83	6	65	12	9	20	57	1.63
17907373--17907464	48	1.9	48	88	4	141	39	4	6	50	1.48
17907542--17907788	19	12.1	19	70	19	160	54	12	2	31	1.48
17907518--17907728	83	2.5	83	90	6	363	54	12	1	31	1.49
17907665--17907757	45	2.1	45	91	4	152	52	12	3	31	1.55
17907747--17907790	21	2.1	21	86	0	61	59	9	0	31	1.29
17909765--17909868	49	2.1	49	94	0	181	31	7	10	50	1.65
17913890--17913923	17	1.9	18	88	5	52	32	17	5	44	1.73
17918503--17918540	19	2.0	19	94	0	67	50	15	7	26	1.72
17919134--17919182	15	3.3	15	75	16	57	26	8	2	63	1.34
17920003--17920102	50	2.0	50	100	0	200	30	14	20	36	1.91
17922412--17922451	16	2.5	16	83	0	53	35	5	27	32	1.79
17922438--17922525	44	2.0	45	86	6	126	32	4	25	37	1.76
17926908--17926959	26	2.0	27	85	11	72	34	19	7	38	1.80
17928970--17929035	22	3.1	22	93	6	111	39	9	18	33	1.82
17929746--17929789	23	2.0	22	90	4	70	34	6	2	56	1.38
17932646--17932689	19	2.2	20	88	4	63	63	4	25	6	1.38
17935446--17935492	16	2.9	16	90	0	76	42	4	31	21	1.72
17935705--17935746	15	2.7	16	82	14	52	52	2	0	45	1.13
17935714--17935755	15	2.9	15	82	10	52	52	0	0	47	1.00
17935820--17935866	16	3.0	16	78	12	53	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17935963--17935997	18	2.0	17	88	5	52	54	0	0	45	0.99
17936083--17936117	18	2.0	17	88	5	52	48	0	2	48	1.16
17935703--17936118	119	3.5	120	94	2	712	49	5	2	43	1.37
17936247--17936277	16	1.9	16	100	0	62	25	6	9	58	1.54
17936294--17936412	60	2.0	61	83	9	156	31	5	8	54	1.52
17947191--17947216	12	2.2	12	100	0	52	23	38	30	7	1.83
17947821--17948146	163	2.0	164	88	1	485	26	12	16	44	1.84
17948882--17948922	21	2.0	21	85	0	55	48	9	9	31	1.69
17956680--17956724	20	2.1	22	84	8	58	15	6	13	64	1.47
17959171--17959218	24	2.0	24	84	4	62	22	4	8	64	1.38
17964807--17964843	5	7.6	5	87	6	58	21	0	2	75	0.92
17964807--17964843	15	2.6	14	91	8	65	21	0	2	75	0.92
17972631--17972796	81	2.0	80	82	8	194	28	16	23	30	1.96
17972595--17972789	54	3.6	53	79	13	211	29	14	23	32	1.94
17972595--17972796	27	7.5	27	73	13	157	29	15	23	31	1.95
17977164--17977217	26	2.1	26	100	0	108	29	20	14	35	1.93
17978492--17978682	50	3.7	50	80	6	150	27	20	28	23	1.99
17983950--17984120	85	2.0	85	95	0	306	26	15	23	34	1.94
17986002--17986130	50	2.6	48	76	12	111	31	25	20	23	1.98
17993212--17993254	22	2.0	22	100	0	86	27	27	13	30	1.95
18004683--18004777	43	2.2	43	92	0	154	15	27	31	25	1.96
18014033--18014232	45	4.5	45	79	4	172	36	26	13	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18014073--18014236	90	1.8	90	86	0	238	37	23	12	26	1.91
18018020--18018051	13	2.5	13	94	0	55	12	43	21	21	1.86
18020193--18020310	33	3.6	33	88	0	155	18	5	33	42	1.75
18020193--18020342	66	2.3	66	81	3	158	17	6	35	41	1.74
18029999--18030053	26	2.1	26	86	0	74	49	9	5	36	1.58
18032722--18032759	16	2.6	14	81	18	51	23	0	2	73	0.95
18035695--18035804	28	4.0	28	73	3	89	25	28	13	32	1.94
18037150--18037206	28	2.0	28	86	0	78	26	19	15	38	1.92
18039861--18039963	50	2.1	50	90	0	161	32	29	8	30	1.87
18042708--18042776	28	2.5	28	87	0	93	30	24	10	34	1.89
18046642--18046819	27	6.7	27	77	6	177	28	24	20	25	1.99
18046647--18046789	54	2.7	54	86	4	204	28	23	21	25	1.99
18055257--18055314	5	11.6	5	100	0	116	0	39	0	60	0.97
18056335--18056383	16	3.1	16	90	0	80	34	10	18	36	1.85
18062343--18062616	42	6.5	42	83	0	343	29	19	20	31	1.97
18062342--18062616	84	3.3	83	89	2	399	29	19	20	31	1.97
18070375--18070607	42	5.6	42	84	0	306	29	20	20	30	1.97
18070375--18070607	84	2.8	84	90	0	351	29	20	20	30	1.97
18073258--18073290	17	1.9	17	88	11	50	42	0	15	42	1.46
18073281--18073315	9	3.9	9	88	0	52	45	0	2	51	1.16
18073280--18073328	13	3.7	13	83	2	53	46	2	4	46	1.33
18075510--18075534	12	2.1	12	100	0	50	32	44	8	16	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18075607--18075644	20	1.9	19	85	15	51	52	13	15	18	1.74
18079939--18079981	18	2.4	18	80	3	52	48	0	0	51	1.00
18081289--18081410	56	2.1	58	87	3	176	30	18	5	45	1.72
18095404--18095435	11	2.9	11	100	0	64	53	9	18	18	1.71
18102412--18102449	20	1.9	20	88	0	58	65	5	10	18	1.41
18109289--18109385	51	1.9	50	95	2	176	43	19	11	25	1.84
18118552--18118824	136	2.0	136	100	0	546	33	14	20	31	1.93
18128565--18128625	30	2.0	31	90	3	97	39	0	40	19	1.52
18128674--18128710	9	4.1	9	92	0	65	29	10	13	45	1.77
18134478--18134728	125	2.0	126	85	2	335	28	15	16	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161