genome.fa.s22.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  58  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18134833--18134967	34	3.9	34	79	9	148	45	14	0	40	1.44
18135804--18135841	17	2.3	17	86	4	51	28	5	0	65	1.14
18135916--18135966	16	3.2	16	82	0	66	41	3	27	27	1.73
18140762--18140870	41	2.6	41	92	1	173	24	22	28	23	2.00
18142602--18142647	24	2.0	23	83	12	58	32	17	8	41	1.80
18149404--18149668	40	6.7	40	82	0	298	34	16	29	19	1.94
18149426--18149655	119	1.9	120	85	0	318	34	16	28	20	1.94
18149594--18149659	20	3.3	20	72	8	71	33	18	34	13	1.90
18149607--18149675	20	3.5	20	71	15	70	36	17	28	17	1.93
18153356--18153547	38	5.1	38	80	6	192	11	17	31	39	1.86
18153358--18153502	75	1.9	76	88	4	222	13	17	31	37	1.88
18159329--18159385	20	2.8	20	71	7	53	36	17	24	21	1.94
18159329--18159592	120	2.2	121	84	2	345	36	17	28	17	1.93
18159329--18159598	40	6.8	39	81	5	256	37	17	27	17	1.93
18172999--18173032	15	2.3	15	94	0	59	32	2	0	64	1.08
18173505--18173813	108	2.9	108	95	0	537	36	19	15	28	1.92
18174288--18174342	27	2.1	28	83	10	71	54	1	5	38	1.34
18175345--18176161	401	2.0	406	97	2	1545	17	15	28	38	1.91
18178816--18178858	22	1.9	22	85	4	59	53	4	0	41	1.21
18178938--18178971	5	6.8	5	90	9	52	35	0	0	64	0.94
18185429--18185528	28	3.6	28	90	0	155	30	12	27	31	1.92
18186585--18186654	35	2.0	35	97	0	131	34	4	22	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18190613--18190651	20	2.1	19	90	9	62	64	17	0	17	1.30
18207114--18207170	15	3.5	15	73	17	60	50	1	0	47	1.11
18210473--18210509	9	4.1	9	92	0	65	45	13	10	29	1.77
18211534--18211559	5	5.2	5	100	0	52	19	19	19	42	1.90
18212038--18212092	15	3.9	15	67	13	53	25	16	5	52	1.65
18216443--18216532	35	2.6	35	83	3	101	26	23	18	31	1.98
18218155--18218266	61	1.9	58	87	5	161	42	4	2	50	1.36
18218061--18218266	68	3.3	61	73	14	170	42	3	3	50	1.39
18221977--18222062	45	1.9	45	95	0	154	39	15	23	22	1.91
18221976--18222084	45	2.4	45	83	3	130	40	14	23	21	1.90
18222304--18222382	27	2.9	27	81	7	72	36	13	26	22	1.92
18222332--18222384	27	2.0	27	92	0	88	32	13	30	24	1.93
18232576--18232605	15	2.0	15	93	0	51	23	20	30	26	1.98
18233953--18234222	39	6.9	39	83	0	306	34	18	31	15	1.93
18234018--18234118	19	5.2	19	63	9	60	35	17	31	14	1.91
18233973--18234222	117	2.1	117	87	0	365	33	18	32	15	1.93
18235638--18235810	37	4.6	37	82	4	177	31	15	17	35	1.92
18238041--18238072	15	2.1	15	94	0	55	65	12	9	12	1.47
18239577--18240296	370	2.0	368	94	0	1260	30	26	15	26	1.96
18245132--18245397	43	6.2	43	82	3	250	22	15	18	43	1.88
18245182--18245564	43	9.0	43	79	4	249	22	15	20	41	1.89
18245190--18245604	85	4.9	85	77	6	297	22	14	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18245338--18245607	43	6.4	42	73	10	147	23	13	21	41	1.88
18245186--18245455	128	2.1	127	80	5	312	21	15	18	43	1.88
18245382--18245539	83	1.9	83	88	0	235	24	14	22	37	1.92
18262697--18262755	30	2.0	30	89	0	91	42	13	10	33	1.78
18275292--18275325	16	2.1	17	94	5	61	32	17	11	38	1.86
18277691--18278138	50	8.8	50	86	1	572	26	20	30	22	1.98
18302313--18302358	20	2.3	20	80	0	56	17	32	13	36	1.88
18302323--18302367	20	2.2	20	84	0	54	17	35	13	33	1.89
18307193--18307284	45	2.0	45	83	4	123	43	10	19	26	1.84
18307310--18307397	44	2.0	45	84	2	115	38	14	15	30	1.88
18316756--18316785	6	5.0	6	100	0	60	16	0	33	50	1.46
18320149--18320208	27	2.3	27	85	2	77	23	13	21	41	1.88
18320163--18320384	80	2.8	81	87	1	322	19	16	20	44	1.87
18320163--18320371	27	7.8	27	90	2	271	19	16	20	43	1.88
18325229--18325270	22	2.0	22	90	4	68	71	16	11	0	1.14
18333560--18333777	39	5.6	39	87	1	294	32	3	20	44	1.69
18333561--18333777	117	1.9	117	88	1	328	32	3	19	44	1.69
18333646--18333799	39	3.9	39	84	5	107	34	3	18	43	1.68
18333859--18333901	23	2.0	22	82	17	54	13	4	27	53	1.60
18345699--18345732	17	2.0	17	100	0	68	23	23	5	47	1.73
18347134--18347185	24	2.1	26	82	13	65	38	0	3	57	1.17
18348410--18348468	29	2.0	30	83	3	75	28	5	15	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18349125--18349443	102	3.0	102	80	14	358	31	15	16	37	1.90
18348998--18349507	112	4.6	113	80	13	592	35	15	16	33	1.90
18349016--18349443	222	2.0	210	89	5	649	32	15	16	35	1.90
18356713--18356770	29	2.0	29	96	0	107	43	6	8	41	1.62
18356815--18356863	25	1.9	26	87	4	73	36	10	10	42	1.73
18364090--18364171	28	2.9	29	74	3	85	37	24	18	19	1.94
18393300--18393561	39	6.7	40	87	7	337	25	22	27	24	2.00
18402233--18402496	40	6.7	40	89	5	360	25	21	27	25	1.99
18402233--18402529	119	2.5	118	81	9	338	26	21	27	25	1.99
18407189--18407233	9	5.2	9	77	17	51	26	2	2	68	1.12
18409307--18409350	9	4.8	9	86	11	54	22	18	13	45	1.84
18409315--18409354	5	8.4	5	79	20	50	25	20	15	40	1.90
18411930--18411983	10	4.9	11	77	18	51	79	0	18	1	0.82
18411930--18411982	17	3.1	16	84	10	70	81	0	16	1	0.79
18412844--18413647	143	5.6	143	86	1	1085	30	19	21	28	1.97
18413616--18413908	44	6.9	43	68	9	136	30	20	20	28	1.98
18415126--18415157	17	1.9	17	93	6	57	21	3	0	75	0.95
18415126--18415157	8	3.9	8	92	8	55	21	3	0	75	0.95
18419846--18419885	15	2.7	15	92	0	62	37	32	7	22	1.82
18420363--18420430	27	2.5	27	80	0	91	25	26	30	17	1.97
18420474--18420619	4	36.0	4	72	21	60	69	1	27	1	1.04
18420471--18420543	36	2.0	36	100	0	146	64	2	30	2	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18420473--18420648	36	5.3	36	76	15	141	69	1	28	1	1.03
18420541--18420647	14	7.3	13	71	24	72	73	0	26	0	0.83
18420510--18420639	43	2.8	47	79	13	126	70	0	27	0	0.97
18420545--18420648	31	3.0	35	82	10	108	72	0	27	0	0.85
18421361--18421416	27	2.1	27	100	0	112	42	14	35	7	1.73
18430509--18430592	25	3.4	24	79	11	89	25	20	23	30	1.98
18431545--18431598	12	4.7	12	73	17	51	29	5	0	64	1.16
18431543--18431606	20	3.5	20	74	24	77	29	4	0	65	1.13
18431536--18431603	34	2.0	34	97	0	127	27	4	0	67	1.09
18434814--18434866	4	13.2	4	75	0	52	22	33	1	41	1.65
18440273--18440657	42	9.2	42	89	1	529	20	18	23	37	1.94
18441423--18441724	145	2.1	143	84	8	387	39	4	10	45	1.58
18443029--18443074	23	2.0	23	91	0	74	47	2	10	39	1.51
18446269--18446308	20	2.0	20	90	9	64	35	17	10	37	1.83
18446217--18446412	99	2.0	98	96	2	367	29	17	10	42	1.82
18446368--18446407	20	2.0	20	90	9	64	35	17	10	37	1.83
18446659--18446999	171	2.0	171	97	0	637	29	24	12	32	1.93
18450084--18450161	13	6.5	13	76	16	78	48	10	0	41	1.37
18450084--18450161	36	2.2	36	95	0	138	48	10	0	41	1.37
18450119--18450168	23	2.2	23	92	3	84	50	10	0	40	1.36
18450913--18450970	25	2.4	24	82	8	73	44	1	0	53	1.10
18451316--18451375	31	1.9	31	86	0	84	35	21	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18454122--18454155	17	2.0	17	94	0	59	58	8	11	20	1.59
18454627--18454663	18	2.1	18	89	0	56	24	27	5	43	1.76
18456981--18457024	21	2.1	21	100	0	88	36	34	13	15	1.87
18461970--18462091	23	5.3	23	84	3	174	22	21	26	30	1.99
18461970--18462091	46	2.7	46	93	0	199	22	21	26	30	1.99
18462187--18462233	23	2.0	22	84	15	60	40	0	23	36	1.55
18476285--18476418	49	2.7	49	84	0	160	41	18	14	25	1.89
18476701--18476783	31	2.7	31	86	0	112	34	19	18	27	1.95
18482347--18482394	26	1.9	26	87	8	73	45	10	2	41	1.50
18488751--18488776	6	4.3	6	100	0	52	19	34	15	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161