genome.fa.s22.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  139  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43270868--43272274	726	1.9	726	99	0	2796	47	10	22	19	1.80
43278914--43278940	6	4.5	6	100	0	54	14	0	0	85	0.61
43280186--43280210	5	5.0	5	100	0	50	0	0	60	40	0.97
43287137--43287162	13	2.0	13	100	0	52	38	7	15	38	1.76
43292498--43292746	91	2.8	91	86	2	315	28	16	24	30	1.97
43292495--43292787	91	3.2	90	83	4	290	27	16	25	30	1.97
43299722--43299766	22	2.0	22	83	8	56	44	11	8	35	1.71
43308610--43308664	27	2.0	27	100	0	110	14	29	14	41	1.85
43311169--43311297	41	3.0	44	75	11	131	31	19	20	27	1.97
43311386--43311475	45	2.0	44	80	2	99	34	16	21	27	1.95
43312271--43312305	15	2.2	16	90	5	54	14	8	0	77	0.99
43315881--43315960	33	2.5	30	75	13	72	42	2	3	51	1.33
43315940--43315975	18	2.0	18	94	0	63	52	5	0	41	1.24
43316863--43316887	13	1.9	13	100	0	50	40	0	4	56	1.18
43316913--43316942	16	1.9	16	93	6	53	36	0	0	63	0.95
43320852--43320901	24	2.2	23	89	7	75	56	6	4	34	1.43
43327791--43327842	20	2.7	19	76	5	68	11	9	17	61	1.55
43328077--43328129	27	2.0	27	100	0	106	20	11	7	60	1.55
43328234--43328258	8	3.1	8	100	0	50	60	0	0	40	0.97
43331183--43331241	24	2.5	24	94	0	100	42	0	27	30	1.56
43331291--43331351	17	3.4	17	68	12	50	32	1	11	54	1.46
43331359--43331429	9	7.4	9	84	12	97	22	8	29	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43331361--43331572	29	7.1	29	74	15	150	22	8	28	41	1.82
43331325--43331534	105	2.0	105	100	0	420	23	6	24	44	1.77
43331464--43331570	9	11.4	9	86	7	151	22	9	32	35	1.86
43331731--43331755	12	2.1	12	100	0	50	16	24	36	24	1.94
43333045--43333120	3	25.3	3	94	0	134	2	31	0	65	1.06
43338468--43338497	9	3.3	9	95	0	51	63	0	0	36	0.95
43339198--43339235	20	1.9	20	94	0	67	36	10	21	31	1.87
43345541--43345583	18	2.3	19	88	4	61	27	0	0	72	0.85
43349747--43349772	5	5.2	5	100	0	52	42	19	19	19	1.90
43350421--43350617	98	2.0	100	94	3	346	39	0	40	20	1.52
43350612--43350672	30	2.0	31	87	3	88	42	0	37	19	1.52
43350887--43350923	9	4.1	9	92	0	65	29	10	13	45	1.77
43351914--43352330	108	3.9	108	97	0	762	29	17	20	32	1.96
43352632--43352669	21	1.9	21	89	10	62	50	2	5	42	1.39
43352860--43352903	21	2.3	18	84	11	52	38	0	18	43	1.50
43352998--43353132	40	3.4	40	76	5	121	37	22	24	16	1.94
43353171--43353485	41	7.8	41	78	9	290	17	24	24	34	1.96
43353229--43353297	35	2.0	35	91	5	113	20	30	23	26	1.98
43353190--43353420	76	2.9	77	82	7	261	17	25	24	32	1.96
43353354--43353508	82	1.9	82	82	5	197	19	21	21	38	1.94
43353945--43353982	15	2.5	15	86	0	58	21	0	42	36	1.53
43358149--43358247	22	4.7	22	70	20	86	49	12	0	38	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43358127--43359253	62	18.0	62	94	4	1917	49	11	1	38	1.48
43358243--43358296	22	2.3	22	87	9	72	46	11	1	40	1.50
43359030--43359297	138	1.9	138	93	3	468	45	14	1	39	1.54
43359203--43359359	9	18.3	9	72	18	113	45	18	0	35	1.54
43359256--43359322	16	4.2	16	83	11	84	44	22	0	32	1.53
43359132--43359359	32	6.8	32	65	21	92	43	17	0	38	1.55
43359327--43359359	16	2.1	16	94	0	57	51	18	0	30	1.46
43367767--43368207	132	3.3	132	86	3	561	22	23	21	32	1.98
43367902--43368197	44	6.7	44	63	16	121	22	23	21	31	1.98
43382058--43382101	21	2.3	18	84	11	52	38	0	18	43	1.50
43383112--43383156	19	2.3	20	78	14	51	55	0	24	20	1.43
43383236--43383295	30	2.0	31	83	3	77	41	0	38	20	1.52
43385062--43385091	15	2.0	15	93	0	51	40	43	13	3	1.60
43386333--43386359	13	2.1	13	100	0	54	37	7	0	55	1.28
43389218--43389255	20	1.9	20	94	0	67	47	0	36	15	1.46
43398186--43398452	94	2.8	95	84	3	335	32	17	22	26	1.96
43398236--43398391	44	3.4	43	66	17	109	32	19	23	25	1.98
43398260--43398409	44	3.3	43	66	17	104	33	18	23	24	1.97
43402637--43402687	15	3.3	15	75	5	57	33	1	3	60	1.26
43414964--43415044	40	2.1	39	85	2	108	50	2	37	8	1.47
43423884--43424120	25	10.1	22	74	15	131	43	15	12	28	1.83
43423884--43424081	47	4.2	47	86	3	256	43	16	13	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43423904--43424103	25	8.4	25	75	15	149	45	15	13	26	1.83
43425052--43425150	28	3.6	27	81	11	112	28	28	12	31	1.92
43431224--43431277	30	1.9	28	82	14	67	48	9	0	42	1.35
43432586--43432812	43	5.3	43	80	3	235	40	22	18	18	1.92
43435642--43435692	24	2.2	23	89	6	77	54	0	5	39	1.24
43437202--43437472	50	5.4	51	73	6	214	22	17	23	36	1.95
43437202--43437494	100	2.9	100	84	3	392	23	18	23	35	1.96
43437652--43438553	132	6.8	132	97	0	1653	28	24	18	28	1.98
43438826--43439132	131	2.3	131	93	0	515	26	21	19	32	1.97
43438519--43439122	313	2.0	308	81	8	701	25	24	20	29	1.99
43439206--43439343	44	3.2	44	71	6	136	26	27	23	23	2.00
43439135--43439347	87	2.4	88	83	3	259	23	29	23	23	1.99
43440579--43440611	17	2.0	17	88	5	50	18	18	0	63	1.31
43441547--43441630	29	3.1	29	80	14	99	9	5	8	76	1.16
43446874--43446924	24	2.2	23	89	6	77	54	0	5	39	1.24
43447087--43447176	43	2.1	44	89	2	137	65	6	15	12	1.45
43461018--43461084	34	1.9	35	87	3	100	31	8	14	44	1.76
43469216--43469246	10	3.0	10	95	4	53	77	0	0	22	0.77
43470071--43470132	3	20.3	3	74	9	54	67	3	3	25	1.20
43470088--43470133	22	2.1	22	87	0	65	71	0	4	23	1.03
43470103--43470154	16	3.3	16	81	5	61	71	1	1	25	1.07
43469134--43470896	890	2.0	881	89	3	2433	42	16	13	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43475199--43475247	21	2.4	20	82	3	53	26	12	18	42	1.85
43475228--43475342	42	2.7	42	79	4	142	20	20	17	42	1.89
43488180--43488231	17	3.1	16	70	8	50	51	11	7	28	1.65
43498618--43498730	43	2.7	43	79	9	142	24	15	24	34	1.95
43498622--43498821	44	4.6	44	80	7	198	22	18	26	32	1.97
43511472--43511524	17	3.0	17	76	10	52	35	15	9	39	1.79
43512489--43512524	17	2.1	18	94	5	65	86	2	11	0	0.68
43525081--43525118	19	2.1	19	90	9	62	68	0	5	26	1.11
43533034--43533063	16	1.9	15	93	6	51	53	3	0	43	1.17
43533301--43533336	13	2.8	13	91	8	56	77	2	0	19	0.88
43533698--43533728	14	2.2	14	94	0	53	77	0	9	12	0.99
43541510--43541589	25	3.2	25	65	16	65	33	20	6	40	1.77
43541503--43541607	51	2.1	51	94	0	183	32	20	6	40	1.78
43542713--43542780	35	1.9	35	93	0	118	27	20	23	27	1.99
43545111--43545251	17	8.2	17	73	10	72	29	27	21	20	1.98
43545093--43545206	17	6.6	17	69	15	65	32	26	18	22	1.97
43545161--43545251	34	2.7	34	81	10	98	28	28	24	18	1.98
43546568--43546646	36	2.2	36	83	0	95	22	29	17	30	1.97
43552651--43552681	7	4.4	7	95	0	53	16	0	9	74	1.07
43552819--43552864	20	2.3	20	84	0	65	73	0	0	26	0.83
43552861--43552906	23	2.0	22	83	4	56	69	2	2	26	1.11
43552821--43552899	14	5.0	15	73	19	54	70	1	1	26	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43561286--43561336	17	2.9	18	73	5	59	29	27	27	15	1.96
43562323--43562400	15	5.2	15	67	11	61	44	7	21	25	1.79
43562319--43562400	30	2.7	30	94	0	137	46	7	21	24	1.77
43566982--43567089	15	7.2	15	66	15	71	45	6	22	25	1.76
43566976--43567099	30	4.1	30	91	1	194	44	5	24	25	1.75
43569347--43569379	6	5.8	6	96	3	52	0	0	9	90	0.44
43575599--43575654	23	2.4	23	85	11	78	50	8	1	39	1.44
43579970--43580018	24	2.1	23	88	3	71	53	8	2	36	1.43
43586556--43586600	17	2.6	17	82	0	54	35	0	15	48	1.45
43591601--43591685	42	2.0	42	95	0	152	43	10	2	43	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161