genome.fa.s22.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  141  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43945116--43945158	21	2.0	21	86	0	59	39	0	2	58	1.11
43945116--43945158	10	4.1	10	79	8	50	39	0	2	58	1.11
43945937--43945980	21	2.1	21	86	0	61	40	18	6	34	1.77
43950953--43950981	15	1.9	15	100	0	58	20	0	37	41	1.53
43951726--43951769	23	1.9	23	90	0	70	13	20	20	45	1.85
43953299--43953380	23	3.4	23	83	8	85	19	24	23	32	1.97
43953540--43953578	20	2.0	20	84	0	51	30	10	23	35	1.88
43953642--43953687	9	5.3	9	74	10	51	39	8	13	39	1.75
43953633--43953683	25	2.0	26	84	3	68	41	5	11	41	1.66
43962170--43962330	44	3.6	45	81	5	177	29	19	20	30	1.97
43962218--43962366	44	3.4	43	83	7	142	30	18	20	30	1.96
43962409--43963439	50	20.9	50	65	9	280	27	19	20	32	1.97
43962379--43963439	100	10.7	100	80	4	1017	27	19	20	32	1.97
43962508--43962779	141	1.9	141	79	3	305	25	16	24	34	1.95
43965584--43965761	27	6.6	27	79	3	115	28	28	16	26	1.97
43965584--43965761	54	3.3	55	80	10	204	28	28	16	26	1.97
43965605--43965760	82	1.9	81	85	3	215	28	28	16	26	1.97
43967582--43967648	9	7.8	9	90	5	86	2	13	0	83	0.76
43967582--43967651	17	4.1	16	83	8	77	2	14	0	82	0.77
43967585--43967654	16	4.2	17	75	8	63	2	12	0	84	0.73
43975925--43976006	23	3.6	23	89	0	128	21	25	18	34	1.96
43975915--43976015	46	2.2	46	85	8	141	21	26	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43976189--43976227	20	2.0	20	84	0	51	30	10	23	35	1.88
43980812--43980869	28	2.1	28	90	0	89	46	5	1	46	1.35
43983601--43983714	42	2.7	42	82	5	113	25	19	27	28	1.99
43983642--43983756	42	2.7	43	82	1	133	24	16	28	30	1.96
43984538--43984865	22	14.9	22	80	0	359	28	11	17	42	1.84
43984535--43984865	44	7.5	44	86	0	419	29	11	17	41	1.84
43984833--43984940	47	2.3	47	85	0	153	23	12	19	45	1.83
43986693--43986962	42	6.3	43	84	1	285	31	19	22	27	1.98
43986693--43987005	43	7.3	42	80	6	170	30	20	21	27	1.98
43987442--43987469	12	2.3	12	100	0	56	0	42	17	39	1.50
43987454--43987519	21	3.1	21	81	12	82	3	43	19	33	1.66
43988858--43989044	41	4.6	41	83	4	182	21	29	19	28	1.98
43988899--43989057	41	3.9	41	81	6	187	22	30	20	27	1.98
43992034--43992062	7	4.1	7	100	0	58	68	0	31	0	0.89
44001276--44001330	20	2.8	20	82	0	74	27	5	20	47	1.72
44001397--44001443	20	2.3	20	85	7	60	31	6	19	42	1.76
44001294--44001554	114	2.3	113	81	4	292	28	13	19	39	1.89
44005955--44005996	21	2.1	21	86	8	61	19	21	4	54	1.62
44008019--44008095	40	1.9	40	83	0	100	29	22	19	28	1.98
44008044--44008160	42	2.9	42	70	11	109	36	21	15	26	1.93
44008284--44008309	13	2.0	13	100	0	52	46	7	0	46	1.31
44008284--44008336	15	3.6	14	77	20	54	49	13	0	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44008285--44008334	17	3.1	16	76	21	50	48	14	0	38	1.44
44011941--44011974	15	2.3	15	94	0	59	58	11	14	14	1.63
44013326--44013477	40	3.8	40	81	10	173	26	21	23	29	1.99
44013325--44013478	82	1.9	82	88	0	236	25	20	23	29	1.99
44013603--44013850	137	1.8	136	92	0	424	29	22	18	28	1.98
44013752--44014143	45	8.4	45	64	15	134	28	23	19	28	1.99
44013750--44013948	97	2.0	98	97	0	373	28	23	18	30	1.98
44013617--44014218	234	2.6	232	96	1	1084	28	22	20	28	1.98
44013984--44014177	95	2.0	95	98	0	379	27	21	20	30	1.98
44014628--44014823	108	1.8	108	90	0	320	47	10	16	25	1.79
44015609--44015665	11	5.0	11	80	6	60	3	3	12	80	0.96
44016900--44017083	62	3.0	62	94	0	314	32	4	20	41	1.74
44021127--44021194	3	22.0	3	82	5	64	66	7	1	25	1.26
44022406--44022552	44	3.3	44	86	1	179	27	25	19	28	1.98
44022641--44022777	44	3.4	44	61	22	109	27	21	24	27	1.99
44022640--44022797	76	2.1	76	100	0	316	25	21	24	28	1.99
44022716--44022958	132	1.8	132	95	0	441	26	23	20	29	1.99
44024688--44024724	17	2.2	17	90	0	56	0	24	0	75	0.80
44024727--44024756	9	3.3	9	100	0	60	10	10	0	80	0.92
44024717--44024756	18	2.2	18	86	8	55	10	12	0	77	0.99
44024750--44024797	12	3.8	12	74	15	51	25	0	10	64	1.25
44024745--44024798	27	2.0	27	92	3	92	22	1	9	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44029108--44029155	3	16.0	3	82	0	60	62	4	2	31	1.26
44030996--44031035	7	5.7	7	90	0	53	70	7	0	22	1.12
44031532--44031644	25	4.6	25	73	13	83	75	2	10	11	1.15
44031546--44031684	37	3.8	36	70	16	92	74	2	10	12	1.18
44031566--44031617	19	2.8	18	82	5	59	73	1	9	15	1.18
44031522--44031655	47	2.9	46	84	10	152	73	2	10	12	1.19
44031523--44031689	36	4.6	36	72	10	135	75	2	10	11	1.15
44038888--44038938	22	2.4	22	77	6	61	43	3	7	45	1.51
44042772--44042827	18	3.1	17	82	12	51	55	8	1	33	1.42
44042784--44042827	18	2.4	18	85	7	63	52	9	0	38	1.33
44044677--44044735	21	2.8	20	80	14	57	54	3	1	40	1.27
44044800--44044842	16	2.6	16	81	3	50	62	0	0	37	0.95
44045215--44045263	21	2.3	20	90	10	80	30	22	16	30	1.96
44051239--44051273	2	17.5	2	100	0	70	51	48	0	0	1.00
44051620--44051662	2	21.5	2	95	0	77	48	2	48	0	1.14
44051646--44051702	29	2.0	28	82	3	69	43	1	33	21	1.63
44057517--44057676	52	3.2	52	68	20	169	40	1	17	40	1.60
44057423--44058010	96	6.1	96	94	1	939	39	1	19	39	1.62
44058048--44058335	126	2.3	127	90	1	454	34	17	19	28	1.95
44061139--44061172	16	2.1	16	88	5	50	41	0	0	58	0.98
44061153--44061185	9	3.6	9	92	8	57	30	0	0	69	0.88
44061153--44061184	10	3.3	10	95	4	57	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44073383--44073493	41	2.7	41	90	0	168	22	28	19	28	1.98
44074043--44074199	70	2.2	70	100	0	314	38	14	5	42	1.68
44074529--44074700	87	2.0	87	97	0	326	41	16	3	38	1.65
44084746--44084784	6	6.5	6	81	0	51	17	51	0	30	1.46
44084750--44084799	24	2.1	24	88	7	75	18	52	0	30	1.46
44084750--44084821	12	6.0	12	72	6	56	19	48	2	29	1.63
44084795--44084835	21	2.0	21	90	0	64	24	39	7	29	1.82
44093909--44093951	17	2.6	17	85	10	54	37	6	2	53	1.41
44095740--44095785	24	1.9	24	86	8	67	47	4	6	41	1.49
44095751--44095802	24	2.2	24	82	0	59	50	5	3	40	1.45
44104494--44104651	10	16.7	9	72	16	97	60	3	1	34	1.20
44104473--44104651	19	9.5	19	69	10	109	61	3	1	34	1.20
44112450--44112559	56	2.0	55	94	1	193	21	20	12	43	1.85
44117289--44117333	22	2.1	21	88	8	65	66	0	0	33	0.92
44117366--44117421	27	2.1	27	83	6	69	51	1	1	44	1.22
44121846--44122092	119	2.0	120	92	3	408	29	16	15	38	1.89
44151469--44151905	43	10.2	42	87	5	558	28	26	18	26	1.98
44151469--44151865	85	4.6	85	93	2	629	28	25	19	26	1.99
44156162--44156325	43	3.9	43	80	4	154	30	16	24	28	1.96
44158123--44158193	37	1.9	37	91	0	115	38	2	22	36	1.69
44163804--44163883	41	2.0	41	89	0	124	30	23	16	30	1.96
44173804--44174428	313	2.0	312	93	1	1083	39	10	13	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44182072--44182347	136	2.0	136	99	0	543	36	14	16	31	1.90
44190665--44190716	16	3.2	16	91	0	77	28	0	34	36	1.58
44214211--44214271	29	2.1	29	81	6	70	49	13	11	26	1.75
44216882--44216926	23	1.9	24	86	4	65	28	0	6	64	1.19
44226455--44226508	20	2.7	20	75	11	56	46	1	0	51	1.11
44226471--44226515	21	2.2	20	84	4	54	48	0	0	51	1.00
44229933--44230006	20	3.8	20	73	18	75	64	2	4	28	1.25
44230915--44230950	16	2.2	16	90	9	56	33	0	38	27	1.57
44231185--44231219	18	2.0	17	88	5	52	54	0	0	45	0.99
44231198--44231372	59	2.9	61	68	13	171	48	6	2	43	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161